Wall clock time and date at job start Mon Mar 30 2020 01:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 N 1.46500 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.46761 * 124.34871 * 269.95578 * 4 3 2 6 6 C 1.54487 * 105.47096 * 197.03821 * 5 4 3 7 7 H 1.08996 * 111.00135 * 92.71655 * 6 5 4 8 8 C 1.50694 * 110.96856 * 216.46478 * 6 5 4 9 9 O 1.21283 * 120.00363 * 353.83107 * 8 6 5 10 10 N 1.34784 * 119.99988 * 173.83225 * 8 6 5 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 6 12 12 H 1.08999 * 109.47597 * 34.99540 * 11 10 8 13 13 C 1.53000 * 109.47099 * 274.99655 * 11 10 8 14 14 C 1.50703 * 109.47052 * 154.99907 * 11 10 8 15 15 H 1.07995 * 120.00009 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99689 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00541 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99577 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47145 * 59.99911 * 18 16 14 20 20 H 1.48499 * 109.46916 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47228 * 300.00064 * 18 16 14 22 22 C 1.54627 * 101.76330 * 334.58509 * 6 5 4 23 23 C 1.34416 * 124.34517 * 89.97758 * 4 3 2 24 24 O 1.21280 * 124.94668 * 359.60771 * 23 4 3 25 25 H 1.09005 * 109.47609 * 299.99926 * 1 2 3 26 26 H 1.08999 * 109.47229 * 59.99906 * 1 2 3 27 27 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46967 * 240.00445 * 2 1 3 29 29 H 1.08999 * 109.47229 * 120.00094 * 2 1 3 30 30 H 1.09007 * 109.46475 * 60.00003 * 3 2 1 31 31 H 1.08999 * 109.47115 * 300.00164 * 3 2 1 32 32 H 1.08995 * 110.24747 * 78.04207 * 5 4 3 33 33 H 1.09000 * 110.24895 * 316.03442 * 5 4 3 34 34 H 0.97000 * 119.99339 * 0.02562 * 10 8 6 35 35 H 1.09003 * 109.47308 * 180.02562 * 13 11 10 36 36 H 1.09005 * 109.47224 * 300.00512 * 13 11 10 37 37 H 1.09008 * 109.47230 * 60.00254 * 13 11 10 38 38 H 0.96996 * 120.00555 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.49059 * 143.48003 * 22 6 5 40 40 H 1.09001 * 110.48461 * 265.98895 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3325 1.4436 1.2127 6 6 5.7406 1.8794 0.7499 7 1 5.8667 2.9579 0.8452 8 6 6.8111 1.1444 1.5144 9 8 6.5073 0.4195 2.4381 10 7 8.1062 1.2925 1.1718 11 6 9.1473 0.5826 1.9189 12 1 8.7712 -0.3923 2.2291 13 6 9.5333 1.3972 3.1551 14 6 10.3581 0.3978 1.0409 15 1 10.3525 0.7714 0.0276 16 6 11.4731 -0.2483 1.5313 17 7 11.4798 -0.7037 2.7650 18 14 12.9742 -0.4767 0.4432 19 1 13.4861 0.8517 0.0207 20 1 14.0295 -1.1965 1.2005 21 1 12.6001 -1.2675 -0.7568 22 6 5.7300 1.4528 -0.7363 23 6 4.2638 1.4419 -1.1089 24 8 3.8354 1.4345 -2.2435 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8900 32 1 4.3702 0.4436 1.6446 33 1 3.9374 2.1542 1.9386 34 1 8.3491 1.8726 0.4333 35 1 10.3083 0.8692 3.7108 36 1 9.9094 2.3722 2.8449 37 1 8.6575 1.5309 3.7902 38 1 12.2643 -1.1579 3.1101 39 1 6.2729 2.1761 -1.3448 40 1 6.1621 0.4587 -0.8509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411747441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:12 Heat of formation + Delta-G solvation = -108.352162 kcal Electronic energy + Delta-G solvation = -20638.306142 eV Core-core repulsion = 17451.478049 eV Total energy + Delta-G solvation = -3186.828093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83414 -40.22183 -37.55408 -36.67784 -35.74514 -34.31396 -32.59547 -30.64220 -28.71390 -27.34656 -27.20556 -24.62384 -22.74207 -22.46663 -21.00476 -20.43261 -19.08475 -17.91049 -17.80427 -17.11827 -16.87535 -16.41888 -15.95299 -15.67590 -15.51701 -14.84187 -14.79578 -14.56274 -14.41306 -14.04402 -13.74922 -13.65049 -13.07687 -12.99421 -12.86524 -12.74498 -12.73888 -12.47937 -12.36182 -12.23246 -12.20011 -12.13008 -11.67067 -11.10803 -11.07297 -10.66163 -10.53661 -9.79315 -9.70562 -8.15946 -6.32855 1.45579 1.46810 1.48062 1.55592 1.76010 1.92054 2.36167 2.58741 3.14794 3.24006 3.39735 3.86785 3.88343 4.00107 4.03935 4.27760 4.33309 4.50623 4.54461 4.62884 4.65890 4.79295 4.81779 4.87127 4.95759 4.98409 5.13537 5.14103 5.16312 5.31996 5.46944 5.55857 5.63170 5.72634 5.92883 6.01702 6.13383 6.75422 6.95999 7.06070 7.34477 7.55363 8.89857 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031967 B = 0.003828 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.696569 B = 7313.037732 C = 7680.051208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.613 5.613 5 C 0.120 3.880 6 C -0.107 4.107 7 H 0.151 0.849 8 C 0.512 3.488 9 O -0.592 6.592 10 N -0.700 5.700 11 C 0.271 3.729 12 H 0.000 1.000 13 C -0.135 4.135 14 C -0.547 4.547 15 H 0.074 0.926 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.288 1.288 21 H -0.272 1.272 22 C -0.141 4.141 23 C 0.516 3.484 24 O -0.573 6.573 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.407 0.593 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.016 0.984 38 H 0.265 0.735 39 H 0.134 0.866 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.978 7.632 -4.251 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.346 5.346 5 C -0.002 4.002 6 C -0.129 4.129 7 H 0.169 0.831 8 C 0.299 3.701 9 O -0.474 6.474 10 N -0.348 5.348 11 C 0.167 3.833 12 H 0.018 0.982 13 C -0.194 4.194 14 C -0.585 4.585 15 H 0.092 0.908 16 C -0.185 4.185 17 N -0.556 5.556 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.197 1.197 22 C -0.181 4.181 23 C 0.305 3.695 24 O -0.454 6.454 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.242 0.758 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.152 0.848 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.363 7.023 -4.036 18.258 hybrid contribution 1.153 -0.425 -0.480 1.319 sum -15.210 6.598 -4.516 17.183 Atomic orbital electron populations 1.21657 0.93199 1.02510 1.02761 1.21893 0.97790 0.96867 1.01465 1.21658 0.76587 0.97385 1.04300 1.48468 1.07133 1.72023 1.06930 1.22002 0.87910 1.03590 0.86746 1.22205 0.93086 1.03495 0.94091 0.83099 1.20667 0.84096 0.81554 0.83830 1.90663 1.82757 1.41360 1.32575 1.46241 1.05769 1.47549 1.35249 1.18333 0.84916 0.90137 0.89916 0.98200 1.21907 0.99400 0.99371 0.98705 1.21551 0.99003 1.38479 0.99510 0.90757 1.25750 1.01662 0.94709 0.96330 1.70033 1.30752 1.38359 1.16411 0.85459 0.78187 0.78672 0.78393 1.18839 1.21391 1.19743 1.22349 0.94294 1.05837 0.95614 1.21072 0.89874 0.74399 0.84155 1.90687 1.79382 1.52737 1.22554 0.90950 0.92296 0.92218 0.94092 0.91870 0.87335 0.90439 0.91145 0.86964 0.75774 0.91730 0.93967 0.96474 0.92607 0.84819 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.14 -2.62 6.26 30.59 0.19 -2.43 16 3 C 0.12 2.17 5.93 86.38 0.51 2.68 16 4 N -0.61 -13.59 2.93 -817.97 -2.40 -15.99 16 5 C 0.12 2.59 6.66 86.84 0.58 3.17 16 6 C -0.11 -2.42 3.54 -10.48 -0.04 -2.45 16 7 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 8 C 0.51 17.67 7.04 87.65 0.62 18.29 16 9 O -0.59 -25.85 15.23 -3.04 -0.05 -25.89 16 10 N -0.70 -26.05 5.02 -446.10 -2.24 -28.29 16 11 C 0.27 13.27 2.56 44.25 0.11 13.38 16 12 H 0.00 0.01 7.57 -2.39 -0.02 -0.01 16 13 C -0.13 -6.49 9.26 71.98 0.67 -5.82 16 14 C -0.55 -27.86 8.73 25.60 0.22 -27.64 16 15 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 16 C 0.02 0.82 5.30 84.66 0.45 1.27 16 17 N -0.92 -51.55 11.32 21.45 0.24 -51.31 16 18 Si 0.97 41.16 29.54 68.60 2.03 43.19 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 C -0.14 -3.23 6.37 30.59 0.19 -3.03 16 23 C 0.52 13.88 8.02 87.90 0.71 14.59 16 24 O -0.57 -19.56 17.60 -3.03 -0.05 -19.61 16 25 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.08 1.48 7.93 -2.39 -0.02 1.46 16 32 H 0.07 1.88 7.06 -2.39 -0.02 1.86 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.41 12.42 8.54 -92.71 -0.79 11.62 16 35 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 36 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.02 0.76 8.14 -2.38 -0.02 0.75 16 38 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.10 2.58 7.89 -2.39 -0.02 2.56 16 Total: -1.00 -69.34 333.22 2.70 -66.64 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.23 Total: 20.47 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 4.93 Total: 10.78 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -4.39 Total: -95.58 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.10 Total: -45.51 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -69.34 2.70 -66.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411747441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.708 kcal (2) G-P(sol) polarization free energy of solvation -69.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds