Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46951 * 2 1 4 4 N 1.46496 * 109.46803 * 119.99966 * 2 1 3 5 5 C 1.47316 * 126.68902 * 120.00115 * 4 2 1 6 6 C 1.51582 * 103.59163 * 179.73523 * 5 4 2 7 7 O 1.21237 * 127.15047 * 179.97438 * 6 5 4 8 8 N 1.34760 * 105.68688 * 359.97438 * 6 5 4 9 9 C 1.46506 * 124.17763 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47248 * 89.97772 * 9 8 6 11 11 C 1.53005 * 109.47052 * 299.99987 * 10 9 8 12 12 C 1.53002 * 109.47112 * 59.99686 * 10 9 8 13 13 C 1.50696 * 109.47289 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99689 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99892 * 179.97438 * 13 10 9 16 16 N 1.31507 * 120.00078 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99725 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47147 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46979 * 119.99996 * 17 15 13 20 20 H 1.48498 * 109.47034 * 240.00280 * 17 15 13 21 21 C 1.33794 * 111.64866 * 0.02562 * 8 6 5 22 22 O 1.21539 * 123.77555 * 180.02562 * 21 8 6 23 23 H 1.08996 * 109.47065 * 300.00108 * 1 2 3 24 24 H 1.09000 * 109.46796 * 59.99908 * 1 2 3 25 25 H 1.09002 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47065 * 239.99892 * 2 1 3 27 27 H 1.09000 * 109.47445 * 299.99694 * 3 2 1 28 28 H 1.09004 * 109.47172 * 60.00324 * 3 2 1 29 29 H 1.09003 * 109.47185 * 179.97438 * 3 2 1 30 30 H 1.09003 * 110.59821 * 298.26429 * 5 4 2 31 31 H 1.09001 * 110.59449 * 61.20625 * 5 4 2 32 32 H 1.09000 * 109.46815 * 209.98039 * 9 8 6 33 33 H 1.09005 * 109.46879 * 329.97341 * 9 8 6 34 34 H 1.09000 * 109.46958 * 59.99462 * 11 10 9 35 35 H 1.08992 * 109.47323 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.46937 * 300.00346 * 11 10 9 37 37 H 1.08997 * 109.46872 * 60.00598 * 12 10 9 38 38 H 1.09005 * 109.46764 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47276 * 300.00125 * 12 10 9 40 40 H 0.97004 * 119.99604 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8685 -1.8931 1.2328 6 6 3.0585 -2.1500 2.7146 7 8 3.6944 -3.0462 3.2267 8 7 2.3735 -1.1751 3.3442 9 6 2.2864 -1.0390 4.8003 10 6 3.4344 -0.1597 5.3000 11 6 4.7706 -0.8050 4.9271 12 6 3.3373 1.2228 4.6518 13 6 3.3452 -0.0202 6.7978 14 1 2.5489 -0.5095 7.3392 15 6 4.2800 0.7320 7.4770 16 7 5.2492 1.3281 6.8177 17 14 4.1689 0.9054 9.3337 18 1 2.9957 0.1440 9.8327 19 1 5.4066 0.3703 9.9557 20 1 4.0164 2.3393 9.6886 21 6 1.7828 -0.3467 2.4753 22 8 1.1094 0.6100 2.8047 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 2.3630 -2.7347 0.7593 31 1 3.8270 -1.6997 0.7511 32 1 1.3344 -0.5793 5.0659 33 1 2.3555 -2.0240 5.2620 34 1 4.8354 -0.9063 3.8437 35 1 5.5885 -0.1789 5.2834 36 1 4.8398 -1.7900 5.3888 37 1 2.3854 1.6826 4.9174 38 1 4.1550 1.8494 5.0081 39 1 3.4022 1.1216 3.5684 40 1 5.9066 1.8576 7.2956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420072367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -43.846965 kcal Electronic energy + Delta-G solvation = -22223.745374 eV Core-core repulsion = 19039.714436 eV Total energy + Delta-G solvation = -3184.030938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97790 -38.30137 -36.78102 -35.64327 -34.93842 -32.39353 -30.64476 -27.29784 -27.23495 -26.02101 -25.60164 -25.03332 -22.76733 -21.63850 -19.51423 -18.57604 -16.98578 -16.67818 -16.08029 -15.84707 -15.46539 -14.81694 -14.59494 -13.99188 -13.96780 -13.74152 -13.58085 -12.99294 -12.64260 -12.58257 -12.28293 -12.13715 -12.04195 -11.38789 -11.37098 -11.19508 -11.12266 -10.68900 -10.64097 -10.32290 -10.23421 -10.13357 -9.97322 -9.61627 -9.40896 -8.87649 -8.72281 -8.56568 -8.30369 -5.94214 -4.05309 2.06800 2.46011 3.30895 3.31601 3.39731 3.43851 3.53642 4.33451 4.45055 4.66652 4.93020 5.05658 5.11975 5.19113 5.32012 5.49169 5.56685 5.59383 5.81042 5.84948 6.09429 6.18029 6.24112 6.33222 6.44952 6.50278 6.72988 6.89748 7.02769 7.14217 7.18861 7.52128 7.63583 7.72408 7.76655 7.84324 8.14668 8.21111 8.45593 8.58526 8.94575 9.59658 11.06891 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.005926 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.263913 B = 4723.646987 C = 5134.914353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.181 3.819 3 C -0.171 4.171 4 N -0.633 5.633 5 C 0.062 3.938 6 C 0.519 3.481 7 O -0.473 6.473 8 N -0.563 5.563 9 C 0.129 3.871 10 C 0.054 3.946 11 C -0.122 4.122 12 C -0.118 4.118 13 C -0.505 4.505 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.884 5.884 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.702 3.298 22 O -0.534 6.534 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.079 0.921 34 H -0.001 1.001 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.001 0.999 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 -3.871 -15.302 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.079 3.921 3 C -0.229 4.229 4 N -0.375 5.375 5 C -0.065 4.065 6 C 0.305 3.695 7 O -0.343 6.343 8 N -0.307 5.307 9 C 0.009 3.991 10 C 0.053 3.947 11 C -0.180 4.180 12 C -0.176 4.176 13 C -0.544 4.544 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.522 5.522 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C 0.405 3.595 22 O -0.407 6.407 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.018 0.982 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.020 0.980 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.808 -3.646 -14.813 16.323 hybrid contribution 0.118 0.091 0.943 0.955 sum -5.690 -3.555 -13.870 15.408 Atomic orbital electron populations 1.22222 0.94611 1.02375 1.03488 1.20791 0.94259 0.92827 0.84216 1.22233 1.01607 0.95588 1.03488 1.47856 1.54229 1.29903 1.05464 1.22466 0.97860 0.89944 0.96234 1.20675 0.78162 0.81414 0.89217 1.90790 1.38073 1.31862 1.73595 1.46603 1.46793 1.26926 1.10392 1.22208 1.02574 1.01998 0.72298 1.18477 0.89729 0.91305 0.95209 1.21772 1.01543 0.99595 0.95103 1.21719 1.01523 0.99562 0.94809 1.20967 1.11888 1.30995 0.90520 0.92454 1.24877 0.95152 0.95238 0.98196 1.69845 1.14800 1.32705 1.34879 0.86517 0.77923 0.77755 0.85665 1.19784 1.21091 1.21077 1.15865 0.80166 0.82542 0.80930 1.90927 1.41921 1.27729 1.80106 0.90666 0.91358 0.92536 0.89084 0.91412 0.90507 0.92298 0.86954 0.86864 0.90061 0.90269 0.98234 0.89956 0.95203 0.95115 0.90254 0.98005 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.23 37.16 0.34 -1.33 16 2 C 0.18 1.87 3.58 -67.93 -0.24 1.62 16 3 C -0.17 -1.90 9.23 37.16 0.34 -1.56 16 4 N -0.63 -8.51 2.88 -172.39 -0.50 -9.01 16 5 C 0.06 0.72 7.65 -4.31 -0.03 0.69 16 6 C 0.52 8.84 6.66 -10.56 -0.07 8.77 16 7 O -0.47 -9.29 16.87 5.59 0.09 -9.20 16 8 N -0.56 -10.71 2.13 -120.72 -0.26 -10.97 16 9 C 0.13 2.80 4.67 -4.04 -0.02 2.78 16 10 C 0.05 1.34 0.57 -155.66 -0.09 1.25 16 11 C -0.12 -3.08 7.26 37.16 0.27 -2.81 16 12 C -0.12 -3.01 7.13 37.16 0.26 -2.74 16 13 C -0.51 -13.71 8.01 -34.44 -0.28 -13.98 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 15 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 16 N -0.88 -24.80 9.35 55.43 0.52 -24.28 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.70 12.63 6.22 -88.01 -0.55 12.08 16 22 O -0.53 -11.04 13.73 5.33 0.07 -10.96 16 23 H 0.07 0.98 6.98 -51.93 -0.36 0.61 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.11 6.95 -51.93 -0.36 0.75 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.78 7.86 -51.93 -0.41 1.37 16 33 H 0.08 1.70 8.00 -51.93 -0.42 1.28 16 34 H 0.00 -0.03 6.19 -51.93 -0.32 -0.35 16 35 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 39 H 0.00 0.02 6.18 -51.93 -0.32 -0.30 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -31.36 314.73 -6.66 -38.02 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.16 Total: -1.12 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.15 Total: 6.51 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.24 Total: -44.26 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.17 Total: -20.16 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.36 -6.66 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420072367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.830 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds