Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46951 * 2 1 4 4 N 1.46496 * 109.46803 * 119.99966 * 2 1 3 5 5 C 1.47316 * 126.68902 * 120.00115 * 4 2 1 6 6 C 1.51582 * 103.59163 * 179.73523 * 5 4 2 7 7 O 1.21237 * 127.15047 * 179.97438 * 6 5 4 8 8 N 1.34760 * 105.68688 * 359.97438 * 6 5 4 9 9 C 1.46506 * 124.17763 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47248 * 89.97772 * 9 8 6 11 11 C 1.53005 * 109.47052 * 299.99987 * 10 9 8 12 12 C 1.53002 * 109.47112 * 59.99686 * 10 9 8 13 13 C 1.50696 * 109.47289 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99689 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99892 * 179.97438 * 13 10 9 16 16 N 1.31507 * 120.00078 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99725 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47147 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46979 * 119.99996 * 17 15 13 20 20 H 1.48498 * 109.47034 * 240.00280 * 17 15 13 21 21 C 1.33794 * 111.64866 * 0.02562 * 8 6 5 22 22 O 1.21539 * 123.77555 * 180.02562 * 21 8 6 23 23 H 1.08996 * 109.47065 * 300.00108 * 1 2 3 24 24 H 1.09000 * 109.46796 * 59.99908 * 1 2 3 25 25 H 1.09002 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47065 * 239.99892 * 2 1 3 27 27 H 1.09000 * 109.47445 * 299.99694 * 3 2 1 28 28 H 1.09004 * 109.47172 * 60.00324 * 3 2 1 29 29 H 1.09003 * 109.47185 * 179.97438 * 3 2 1 30 30 H 1.09003 * 110.59821 * 298.26429 * 5 4 2 31 31 H 1.09001 * 110.59449 * 61.20625 * 5 4 2 32 32 H 1.09000 * 109.46815 * 209.98039 * 9 8 6 33 33 H 1.09005 * 109.46879 * 329.97341 * 9 8 6 34 34 H 1.09000 * 109.46958 * 59.99462 * 11 10 9 35 35 H 1.08992 * 109.47323 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.46937 * 300.00346 * 11 10 9 37 37 H 1.08997 * 109.46872 * 60.00598 * 12 10 9 38 38 H 1.09005 * 109.46764 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47276 * 300.00125 * 12 10 9 40 40 H 0.97004 * 119.99604 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8685 -1.8931 1.2328 6 6 3.0585 -2.1500 2.7146 7 8 3.6944 -3.0462 3.2267 8 7 2.3735 -1.1751 3.3442 9 6 2.2864 -1.0390 4.8003 10 6 3.4344 -0.1597 5.3000 11 6 4.7706 -0.8050 4.9271 12 6 3.3373 1.2228 4.6518 13 6 3.3452 -0.0202 6.7978 14 1 2.5489 -0.5095 7.3392 15 6 4.2800 0.7320 7.4770 16 7 5.2492 1.3281 6.8177 17 14 4.1689 0.9054 9.3337 18 1 2.9957 0.1440 9.8327 19 1 5.4066 0.3703 9.9557 20 1 4.0164 2.3393 9.6886 21 6 1.7828 -0.3467 2.4753 22 8 1.1094 0.6100 2.8047 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 2.3630 -2.7347 0.7593 31 1 3.8270 -1.6997 0.7511 32 1 1.3344 -0.5793 5.0659 33 1 2.3555 -2.0240 5.2620 34 1 4.8354 -0.9063 3.8437 35 1 5.5885 -0.1789 5.2834 36 1 4.8398 -1.7900 5.3888 37 1 2.3854 1.6826 4.9174 38 1 4.1550 1.8494 5.0081 39 1 3.4022 1.1216 3.5684 40 1 5.9066 1.8576 7.2956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420072367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -63.362812 kcal Electronic energy + Delta-G solvation = -22224.591644 eV Core-core repulsion = 19039.714436 eV Total energy + Delta-G solvation = -3184.877208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.30504 -39.65535 -38.33141 -37.11650 -36.35580 -33.94554 -32.34829 -28.45855 -28.05245 -27.73956 -27.67007 -27.05726 -23.98692 -22.92398 -21.02857 -20.11522 -18.46584 -17.97733 -17.77328 -17.36895 -16.65789 -16.60916 -16.03978 -15.29721 -15.22696 -15.11681 -14.65650 -14.52212 -14.46398 -14.12315 -13.63704 -13.21018 -13.11343 -13.07510 -12.95512 -12.67027 -12.60920 -12.38297 -12.29111 -12.16974 -12.15454 -11.92268 -11.48086 -11.42341 -10.98363 -10.76771 -10.42443 -10.39303 -9.85152 -8.03779 -6.21745 0.76831 1.24484 1.41337 1.43906 1.54440 2.11511 2.19885 2.44861 3.17825 3.19419 3.75560 4.11917 4.12329 4.33168 4.37692 4.38974 4.42315 4.57164 4.61060 4.63378 4.77967 4.80459 4.92550 4.94832 4.97966 5.05983 5.10984 5.17600 5.39595 5.43240 5.48727 5.57836 5.62259 5.67778 6.02839 6.10852 6.34919 6.36207 6.53854 6.83328 7.22934 7.45956 8.96008 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.005926 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.263913 B = 4723.646987 C = 5134.914353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.174 3.826 3 C -0.169 4.169 4 N -0.620 5.620 5 C 0.075 3.925 6 C 0.507 3.493 7 O -0.505 6.505 8 N -0.576 5.576 9 C 0.140 3.860 10 C 0.047 3.953 11 C -0.103 4.103 12 C -0.095 4.095 13 C -0.526 4.526 14 H 0.054 0.946 15 C 0.022 3.978 16 N -0.906 5.906 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.283 1.283 21 C 0.692 3.308 22 O -0.572 6.572 23 H 0.035 0.965 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.142 0.858 27 H 0.097 0.903 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.161 0.839 31 H 0.147 0.853 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.011 0.989 35 H 0.057 0.943 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.054 0.946 39 H 0.009 0.991 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 -4.893 -17.668 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 C -0.227 4.227 4 N -0.360 5.360 5 C -0.049 4.049 6 C 0.297 3.703 7 O -0.378 6.378 8 N -0.320 5.320 9 C 0.019 3.981 10 C 0.046 3.954 11 C -0.161 4.161 12 C -0.153 4.153 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.177 4.177 16 N -0.544 5.544 17 Si 0.780 3.220 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.208 1.208 21 C 0.395 3.605 22 O -0.448 6.448 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.160 0.840 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.178 0.822 31 H 0.164 0.836 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.001 -4.683 -17.240 18.846 hybrid contribution 0.165 0.421 1.611 1.673 sum -5.837 -4.262 -15.629 17.219 Atomic orbital electron populations 1.22186 0.94385 1.02785 1.02890 1.21241 0.94526 0.92536 0.84267 1.22220 1.01332 0.96313 1.02850 1.48101 1.53410 1.30147 1.04369 1.22724 0.99681 0.90534 0.91982 1.21631 0.76898 0.80196 0.91603 1.90773 1.39277 1.32873 1.74897 1.46642 1.47760 1.28182 1.09419 1.21724 1.00652 1.00941 0.74793 1.18485 0.90880 0.91528 0.94499 1.21530 1.00694 0.98270 0.95586 1.21449 0.99366 0.99415 0.95083 1.21284 1.11979 1.31257 0.91929 0.92729 1.25594 0.94874 0.94968 1.02269 1.69968 1.15203 1.32974 1.36299 0.85570 0.78014 0.77646 0.80774 1.19250 1.20665 1.20850 1.16106 0.80003 0.82052 0.82335 1.90904 1.43585 1.29299 1.80997 0.94557 0.88645 0.91598 0.84014 0.88447 0.94743 0.92608 0.82173 0.83550 0.90996 0.90422 0.96976 0.92452 0.96151 0.96721 0.92727 0.97230 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.23 71.98 0.66 -2.15 16 2 C 0.17 2.93 3.58 44.99 0.16 3.09 16 3 C -0.17 -3.39 9.23 71.98 0.66 -2.73 16 4 N -0.62 -14.82 2.88 -817.73 -2.36 -17.18 16 5 C 0.08 1.43 7.65 85.76 0.66 2.09 16 6 C 0.51 16.41 6.66 87.94 0.59 16.99 16 7 O -0.51 -19.33 16.87 -2.90 -0.05 -19.38 16 8 N -0.58 -21.72 2.13 -773.11 -1.65 -23.37 16 9 C 0.14 6.24 4.67 86.38 0.40 6.64 16 10 C 0.05 2.41 0.57 -52.93 -0.03 2.38 16 11 C -0.10 -5.26 7.26 71.98 0.52 -4.74 16 12 C -0.10 -4.99 7.13 71.98 0.51 -4.48 16 13 C -0.53 -29.19 8.01 25.60 0.21 -28.98 16 14 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 15 C 0.02 1.23 5.15 84.66 0.44 1.67 16 16 N -0.91 -51.82 9.35 21.45 0.20 -51.62 16 17 Si 0.95 44.16 29.54 68.60 2.03 46.19 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 C 0.69 24.51 6.22 179.44 1.12 25.62 16 22 O -0.57 -24.27 13.73 -3.84 -0.05 -24.32 16 23 H 0.04 0.92 6.98 -2.39 -0.02 0.90 16 24 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.14 1.10 8.12 -2.39 -0.02 1.08 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.03 0.99 6.95 -2.38 -0.02 0.97 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 3.28 7.86 -2.39 -0.02 3.26 16 33 H 0.08 3.42 8.00 -2.38 -0.02 3.40 16 34 H 0.01 0.54 6.19 -2.39 -0.01 0.53 16 35 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 36 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.01 0.75 8.10 -2.39 -0.02 0.73 16 38 H 0.05 3.11 6.07 -2.38 -0.01 3.10 16 39 H 0.01 0.44 6.18 -2.39 -0.01 0.42 16 40 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -71.85 314.73 5.04 -66.81 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.02 Total: 7.47 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.90 Total: 15.41 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -3.80 Total: -92.18 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.10 Total: -43.70 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.85 5.04 -66.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420072367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.445 kcal (2) G-P(sol) polarization free energy of solvation -71.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds