Wall clock time and date at job start Mon Mar 30 2020 00:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47228 * 2 1 4 4 C 1.50702 * 109.47013 * 239.99848 * 2 1 3 5 5 H 1.07994 * 120.00109 * 241.34864 * 4 2 1 6 6 C 1.37882 * 119.99646 * 61.34570 * 4 2 1 7 7 N 1.31516 * 119.99529 * 193.97343 * 6 4 2 8 8 Si 1.86796 * 120.00112 * 13.97841 * 6 4 2 9 9 H 1.48501 * 109.47231 * 84.54710 * 8 6 4 10 10 H 1.48500 * 109.46897 * 204.54384 * 8 6 4 11 11 H 1.48493 * 109.47445 * 324.54822 * 8 6 4 12 12 C 1.52997 * 109.47177 * 120.00174 * 2 1 3 13 13 N 1.46498 * 109.47125 * 299.99770 * 12 2 1 14 14 C 1.34782 * 120.00491 * 180.02562 * 13 12 2 15 15 O 1.21347 * 119.99406 * 359.97438 * 14 13 12 16 16 C 1.49444 * 120.00415 * 180.02562 * 14 13 12 17 17 O 1.21355 * 119.99903 * 359.97438 * 16 14 13 18 18 N 1.34781 * 120.00285 * 180.02562 * 16 14 13 19 19 C 1.47024 * 125.64339 * 359.68096 * 18 16 14 20 20 C 1.54322 * 107.26696 * 181.33037 * 19 18 16 21 21 C 1.55159 * 102.94254 * 22.19447 * 20 19 18 22 22 C 1.47420 * 125.64845 * 180.02562 * 18 16 14 23 23 H 1.09007 * 109.46723 * 309.36814 * 1 2 3 24 24 H 1.08994 * 109.47226 * 69.36696 * 1 2 3 25 25 H 1.08994 * 109.47218 * 189.36929 * 1 2 3 26 26 H 1.09003 * 109.47148 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47456 * 299.99968 * 3 2 1 28 28 H 1.08995 * 109.47471 * 60.00081 * 3 2 1 29 29 H 0.97005 * 119.99836 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47582 * 179.97438 * 12 2 1 31 31 H 1.09001 * 109.47252 * 59.99318 * 12 2 1 32 32 H 0.97001 * 120.00051 * 0.02562 * 13 12 2 33 33 H 1.09004 * 109.88236 * 300.74683 * 19 18 16 34 34 H 1.08997 * 109.88154 * 61.91649 * 19 18 16 35 35 H 1.08997 * 110.72120 * 263.83276 * 20 19 18 36 36 H 1.09004 * 110.71960 * 140.55856 * 20 19 18 37 37 H 1.09005 * 111.00375 * 206.42151 * 21 20 19 38 38 H 1.09000 * 111.00217 * 82.57530 * 21 20 19 39 39 H 1.09008 * 110.36308 * 274.43701 * 22 18 16 40 40 H 1.08995 * 110.37160 * 36.64819 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6351 -1.6010 -1.1315 6 6 1.7223 -0.2234 -2.4826 7 7 1.9157 -0.9726 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4816 -2.7084 10 1 0.2470 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8778 -0.4908 3.6696 15 8 2.5754 -1.4774 3.7808 16 6 1.3792 0.2134 4.8898 17 8 0.6811 1.1998 4.7784 18 7 1.7056 -0.2465 6.1139 19 6 2.5351 -1.4281 6.3922 20 6 2.6086 -1.5853 7.9256 21 6 1.3525 -0.8167 8.4144 22 6 1.2843 0.3479 7.3955 23 1 -0.3633 0.6519 0.7945 24 1 -0.3633 0.3621 -0.9617 25 1 -0.3633 -1.0139 0.1673 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6972 -0.6301 -4.4268 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 0.9938 0.7578 2.3564 33 1 2.0787 -2.3138 5.9501 34 1 3.5360 -1.2823 5.9861 35 1 3.5171 -1.1279 8.3171 36 1 2.5519 -2.6365 8.2087 37 1 1.4939 -0.4415 9.4280 38 1 0.4624 -1.4428 8.3519 39 1 1.9671 1.1464 7.6860 40 1 0.2660 0.7292 7.3203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422486463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:37 Heat of formation + Delta-G solvation = -53.514775 kcal Electronic energy + Delta-G solvation = -21010.530200 eV Core-core repulsion = 17826.080035 eV Total energy + Delta-G solvation = -3184.450165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64783 -38.81093 -37.49624 -36.77845 -33.43911 -31.84155 -31.48780 -29.32563 -26.88452 -26.37242 -25.21257 -24.47846 -22.15188 -21.40099 -19.80912 -19.15659 -17.67664 -16.98409 -16.62632 -16.10051 -15.52784 -15.25329 -14.95384 -14.33724 -14.03585 -13.73740 -13.57586 -13.22333 -13.02456 -12.88084 -12.64304 -12.53842 -12.23473 -12.03449 -11.77433 -11.54596 -11.36554 -11.19924 -11.04050 -10.48357 -10.33021 -10.18062 -10.07711 -9.39748 -9.12385 -8.93605 -8.69709 -8.68513 -8.47389 -6.16489 -4.14246 1.58941 2.39640 3.25185 3.33158 3.38649 3.39440 3.64807 4.26707 4.33094 4.35189 4.60892 4.69219 5.02604 5.07155 5.14485 5.37678 5.43052 5.54060 5.67366 5.69639 5.70747 5.86094 5.98852 6.03213 6.04405 6.35083 6.40895 6.48823 6.57805 6.61812 6.68141 6.90395 7.09109 7.17538 7.39378 7.48416 7.69527 7.87554 8.25998 8.42747 8.87799 9.47377 10.96353 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.044926 B = 0.004096 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.104375 B = 6834.533380 C = 7217.302721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.028 3.972 3 C -0.150 4.150 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.077 3.923 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.139 3.861 13 N -0.688 5.688 14 C 0.500 3.500 15 O -0.526 6.526 16 C 0.520 3.480 17 O -0.525 6.525 18 N -0.596 5.596 19 C 0.107 3.893 20 C -0.136 4.136 21 C -0.134 4.134 22 C 0.103 3.897 23 H 0.024 0.976 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.409 0.591 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 1.573 21.990 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 C -0.207 4.207 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.174 1.174 12 C 0.018 3.982 13 N -0.340 5.340 14 C 0.280 3.720 15 O -0.403 6.403 16 C 0.304 3.696 17 O -0.401 6.401 18 N -0.331 5.331 19 C -0.016 4.016 20 C -0.174 4.174 21 C -0.172 4.172 22 C -0.019 4.019 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.246 0.754 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.734 1.390 21.680 21.737 hybrid contribution -0.517 1.323 -0.362 1.466 sum -1.250 2.714 21.319 21.527 Atomic orbital electron populations 1.22318 0.97670 0.99974 1.00245 1.18742 0.92706 0.92369 0.93493 1.22380 1.01229 0.98230 0.98875 1.20678 1.34269 1.12362 0.87896 0.90457 1.24958 0.94590 0.97316 0.95756 1.69948 1.48049 1.35920 0.98747 0.87306 0.79445 0.85484 0.76101 1.21278 1.23335 1.17410 1.21716 0.98973 0.96017 0.81526 1.46187 1.50964 1.31595 1.05213 1.19843 0.82319 0.85192 0.84694 1.90725 1.37401 1.25633 1.86528 1.20177 0.81096 0.84588 0.83742 1.90750 1.37310 1.25813 1.86209 1.48282 1.50536 1.29518 1.04805 1.22196 0.96025 0.88073 0.95283 1.22742 0.98481 1.01640 0.94533 1.22797 0.98847 0.96908 0.98644 1.22332 1.01317 0.96221 0.82063 0.95697 0.92357 0.93328 0.92693 0.93885 0.94952 0.92509 0.91295 0.91200 0.75439 0.90156 0.90254 0.90487 0.89744 0.89600 0.90407 0.90982 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 7.53 37.16 0.28 -2.74 16 2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -3.12 7.52 37.16 0.28 -2.84 16 4 C -0.51 -13.72 8.62 -34.44 -0.30 -14.01 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.13 5.32 -17.82 -0.09 2.03 16 7 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 8 Si 0.88 21.22 22.79 -169.99 -3.87 17.35 16 9 H -0.29 -6.82 7.10 56.52 0.40 -6.42 16 10 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.25 -5.48 4.65 56.52 0.26 -5.22 16 12 C 0.14 2.77 4.49 -4.04 -0.02 2.75 16 13 N -0.69 -12.07 5.00 -60.73 -0.30 -12.38 16 14 C 0.50 8.53 7.86 -11.59 -0.09 8.44 16 15 O -0.53 -9.61 14.12 5.50 0.08 -9.53 16 16 C 0.52 8.12 7.91 -11.59 -0.09 8.03 16 17 O -0.52 -9.13 16.73 5.49 0.09 -9.03 16 18 N -0.60 -7.45 3.33 -171.04 -0.57 -8.02 16 19 C 0.11 1.13 5.49 -3.06 -0.02 1.11 16 20 C -0.14 -0.93 6.95 -24.90 -0.17 -1.10 16 21 C -0.13 -0.86 7.08 -24.59 -0.17 -1.04 16 22 C 0.10 0.96 6.91 -2.55 -0.02 0.94 16 23 H 0.02 0.45 7.13 -51.93 -0.37 0.08 16 24 H 0.06 1.29 4.30 -51.93 -0.22 1.06 16 25 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.94 2.25 -51.93 -0.12 0.82 16 28 H 0.03 0.58 6.86 -51.93 -0.36 0.22 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.41 6.93 5.73 -40.82 -0.23 6.69 16 33 H 0.08 0.93 7.58 -51.93 -0.39 0.53 16 34 H 0.08 0.91 7.70 -51.93 -0.40 0.51 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -30.83 310.10 -5.63 -36.46 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.01 Total: 4.09 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.49 Total: 2.11 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.10 Total: -46.13 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -3.87 Total: 17.35 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.83 -5.63 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422486463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.054 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds