Wall clock time and date at job start Mon Mar 30 2020 01:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 H 1.09003 * 109.47211 * 54.99891 * 3 2 1 5 5 C 1.50691 * 109.47379 * 175.00278 * 3 2 1 6 6 H 1.08002 * 120.00610 * 119.99783 * 5 3 2 7 7 C 1.37883 * 120.00223 * 299.99621 * 5 3 2 8 8 N 1.31505 * 120.00570 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99620 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46904 * 89.99789 * 9 7 5 11 11 H 1.48493 * 109.46869 * 209.99809 * 9 7 5 12 12 H 1.48494 * 109.47135 * 330.00126 * 9 7 5 13 13 N 1.46507 * 109.46790 * 295.00304 * 3 2 1 14 14 C 1.34778 * 120.00131 * 84.99863 * 13 3 2 15 15 O 1.21278 * 119.99828 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99741 * 179.97438 * 14 13 3 17 17 C 1.50697 * 109.46617 * 179.97438 * 16 14 13 18 18 O 1.21283 * 120.00521 * 359.73030 * 17 16 14 19 19 N 1.34784 * 119.99774 * 180.02562 * 17 16 14 20 20 C 1.46499 * 119.99893 * 179.72962 * 19 17 16 21 21 C 1.53003 * 109.46708 * 180.02562 * 20 19 17 22 22 C 1.53007 * 117.49539 * 243.61881 * 21 20 19 23 23 C 1.52998 * 117.49619 * 174.99955 * 21 20 19 24 24 H 1.09003 * 109.46976 * 299.99879 * 1 2 3 25 25 H 1.08995 * 109.47324 * 59.99870 * 1 2 3 26 26 H 1.09004 * 109.47101 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47290 * 240.00443 * 2 1 3 28 28 H 1.09005 * 109.47578 * 119.99637 * 2 1 3 29 29 H 0.97003 * 120.00663 * 180.02562 * 8 7 5 30 30 H 0.97004 * 119.99551 * 264.99685 * 13 3 2 31 31 H 1.09001 * 109.46798 * 60.00692 * 16 14 13 32 32 H 1.08993 * 109.47546 * 300.00244 * 16 14 13 33 33 H 0.97005 * 119.99846 * 359.72750 * 19 17 16 34 34 H 1.08998 * 109.47134 * 299.99552 * 20 19 17 35 35 H 1.08994 * 109.47397 * 59.99843 * 20 19 17 36 36 H 1.08994 * 115.55639 * 29.32447 * 21 20 19 37 37 H 1.09001 * 117.49468 * 359.97438 * 22 21 20 38 38 H 1.08996 * 117.49804 * 145.01935 * 22 21 20 39 39 H 1.08999 * 117.50081 * 214.97438 * 23 21 20 40 40 H 1.08998 * 117.49963 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4539 0.8797 1.3357 9 14 3.0964 0.1090 2.5701 10 1 2.8757 -1.3271 2.2634 11 1 3.7937 0.2350 3.8751 12 1 1.7877 0.8073 2.6386 13 7 1.6523 2.0975 -1.2519 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6319 -0.4344 16 6 0.0365 3.3386 -2.6545 17 6 -1.3615 3.8858 -2.5231 18 8 -1.9758 3.7382 -1.4879 19 7 -1.9314 4.5341 -3.5583 20 6 -3.2926 5.0608 -3.4327 21 6 -3.6972 5.7454 -4.7399 22 6 -3.9762 7.2490 -4.6929 23 6 -5.1333 6.2608 -4.8523 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8771 0.4813 2.1124 30 1 2.2718 2.1231 -1.9979 31 1 0.0678 2.6144 -3.4686 32 1 0.7278 4.1540 -2.8668 33 1 -1.4402 4.6518 -4.3865 34 1 -3.9812 4.2422 -3.2235 35 1 -3.3288 5.7833 -2.6174 36 1 -3.2332 5.3473 -5.6422 37 1 -3.8720 7.7504 -3.7307 38 1 -3.6957 7.8404 -5.5645 39 1 -5.6141 6.2021 -5.8288 40 1 -5.7900 6.1118 -3.9952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427689005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:32 Heat of formation + Delta-G solvation = -75.231329 kcal Electronic energy + Delta-G solvation = -20423.954490 eV Core-core repulsion = 17238.562624 eV Total energy + Delta-G solvation = -3185.391866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28690 -39.95139 -38.35391 -36.94238 -35.08809 -34.34833 -33.42402 -31.45278 -29.33714 -27.61875 -24.61735 -23.24940 -22.91492 -21.96504 -21.42561 -20.92059 -19.08831 -18.13003 -17.79436 -17.39200 -16.87119 -16.71643 -16.21745 -15.83348 -15.47653 -15.13978 -14.89116 -14.63156 -14.33708 -14.21653 -13.95841 -13.68952 -13.58335 -13.00215 -12.76524 -12.69919 -12.38816 -12.37900 -12.33799 -11.85263 -11.44147 -11.36296 -11.21263 -11.12877 -10.96240 -10.84606 -10.27487 -9.99396 -9.66176 -8.37675 -6.41671 1.25612 1.34479 1.44960 1.71517 1.94233 1.99129 2.26258 2.72043 2.92081 2.98638 3.67720 3.73060 3.99713 4.07294 4.17735 4.25346 4.29227 4.32920 4.43690 4.48276 4.55243 4.70729 4.75390 4.82142 4.87795 5.00848 5.04666 5.14280 5.22176 5.25096 5.27182 5.44694 5.53256 5.53865 5.74612 6.18799 6.60877 6.63951 6.99886 7.22591 7.38561 7.65843 8.77334 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045980 B = 0.003474 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.811651 B = 8058.513514 C = 8322.378990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.250 3.750 4 H 0.013 0.987 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.032 3.968 8 N -0.933 5.933 9 Si 0.932 3.068 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.267 1.267 13 N -0.702 5.702 14 C 0.493 3.507 15 O -0.556 6.556 16 C -0.151 4.151 17 C 0.507 3.493 18 O -0.556 6.556 19 N -0.714 5.714 20 C 0.151 3.849 21 C -0.167 4.167 22 C -0.177 4.177 23 C -0.173 4.173 24 H 0.028 0.972 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.269 0.731 30 H 0.409 0.591 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.419 0.581 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 8.382 -18.182 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.145 3.855 4 H 0.031 0.969 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.760 3.240 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.192 1.192 13 N -0.353 5.353 14 C 0.279 3.721 15 O -0.434 6.434 16 C -0.193 4.193 17 C 0.292 3.708 18 O -0.432 6.432 19 N -0.369 5.369 20 C 0.027 3.973 21 C -0.185 4.185 22 C -0.214 4.214 23 C -0.210 4.210 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.245 0.755 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.257 0.743 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.149 0.851 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.672 8.206 -16.652 24.952 hybrid contribution 0.488 -0.320 0.522 0.783 sum -16.184 7.886 -16.130 24.172 Atomic orbital electron populations 1.21732 0.95574 1.00222 1.01337 1.22199 0.95391 0.98726 1.01065 1.18706 0.93116 0.89498 0.84196 0.96865 1.21306 0.90273 1.38177 1.06875 0.91963 1.25481 0.95617 0.96016 0.99708 1.69956 1.10063 1.46325 1.30853 0.86107 0.79184 0.80040 0.78685 1.18480 1.22133 1.19239 1.45933 1.15770 1.56718 1.16890 1.20775 0.81743 0.79237 0.90389 1.90815 1.51692 1.59038 1.41819 1.21617 0.95302 1.04749 0.97650 1.20542 0.88632 0.78253 0.83327 1.90858 1.64851 1.57352 1.30118 1.45776 1.16497 1.57857 1.16819 1.20791 0.82914 0.97076 0.96495 1.22397 1.00983 0.97040 0.98061 1.23156 1.02823 0.91624 1.03797 1.23051 0.90599 1.03248 1.04101 0.95318 0.92703 0.92436 0.90775 0.94145 0.92123 0.75547 0.82114 0.82659 0.74301 0.92729 0.93275 0.85123 0.89369 0.87109 0.86934 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 8.51 71.98 0.61 -4.80 16 2 C -0.14 -5.98 5.11 30.59 0.16 -5.82 16 3 C 0.25 11.96 1.83 44.24 0.08 12.04 16 4 H 0.01 0.74 6.64 -2.39 -0.02 0.73 16 5 C -0.53 -28.71 9.31 25.60 0.24 -28.47 16 6 H 0.06 3.53 7.98 -2.91 -0.02 3.51 16 7 C 0.03 1.80 5.45 84.66 0.46 2.26 16 8 N -0.93 -56.12 13.96 21.45 0.30 -55.82 16 9 Si 0.93 46.06 24.41 68.60 1.67 47.74 16 10 H -0.26 -12.02 6.83 99.48 0.68 -11.34 16 11 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 12 H -0.27 -13.48 6.53 99.48 0.65 -12.83 16 13 N -0.70 -26.34 5.02 -446.09 -2.24 -28.58 16 14 C 0.49 17.89 6.39 87.66 0.56 18.45 16 15 O -0.56 -26.40 11.32 20.42 0.23 -26.17 16 16 C -0.15 -3.26 6.19 29.10 0.18 -3.08 16 17 C 0.51 13.71 7.82 87.65 0.69 14.40 16 18 O -0.56 -22.55 14.18 20.40 0.29 -22.26 16 19 N -0.71 -12.34 5.56 -463.06 -2.57 -14.92 16 20 C 0.15 2.76 5.96 86.38 0.51 3.27 16 21 C -0.17 -1.85 5.85 -10.79 -0.06 -1.91 16 22 C -0.18 -1.85 10.18 30.60 0.31 -1.54 16 23 C -0.17 -1.78 10.25 30.59 0.31 -1.47 16 24 H 0.03 1.29 7.85 -2.39 -0.02 1.28 16 25 H 0.05 2.22 5.64 -2.39 -0.01 2.20 16 26 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.04 1.88 3.21 -2.38 -0.01 1.88 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.41 12.58 8.54 -92.71 -0.79 11.79 16 31 H 0.16 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.42 3.66 8.40 -92.70 -0.78 2.88 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.09 7.88 -2.39 -0.02 1.07 16 36 H 0.13 0.94 8.04 -2.39 -0.02 0.93 16 37 H 0.09 1.09 8.03 -2.39 -0.02 1.07 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -80.76 323.40 1.14 -79.62 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.60 Total: 17.06 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 4.05 Total: 3.33 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -4.51 Total: -99.32 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: 0.52 Total: -48.43 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.74 kcal Total: -80.76 1.14 -79.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427689005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.393 kcal (2) G-P(sol) polarization free energy of solvation -80.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds