Wall clock time and date at job start Mon Mar 30 2020 01:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46764 * 2 1 4 4 H 1.09001 * 110.53929 * 303.83954 * 3 2 1 5 5 C 1.54268 * 110.49168 * 66.45382 * 3 2 1 6 6 C 1.53869 * 106.60115 * 142.28754 * 5 3 2 7 7 C 1.54270 * 106.63967 * 359.97438 * 6 5 3 8 8 C 1.54895 * 110.48589 * 181.23033 * 3 2 1 9 9 H 1.09003 * 110.74950 * 321.87353 * 8 3 2 10 10 C 1.50691 * 110.75703 * 85.05971 * 8 3 2 11 11 O 1.21286 * 120.00068 * 0.02562 * 10 8 3 12 12 N 1.34781 * 120.00205 * 180.02562 * 10 8 3 13 13 C 1.46494 * 120.00321 * 180.02562 * 12 10 8 14 14 C 1.50695 * 109.47412 * 179.97438 * 13 12 10 15 15 O 1.21296 * 120.00052 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00613 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00386 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00005 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99798 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00437 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46914 * 60.00247 * 21 19 17 23 23 H 1.48498 * 109.47158 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47137 * 300.00446 * 21 19 17 25 25 H 1.09004 * 109.46876 * 300.00048 * 1 2 3 26 26 H 1.08992 * 109.47163 * 60.00311 * 1 2 3 27 27 H 1.09005 * 109.46544 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47178 * 239.99720 * 2 1 3 29 29 H 1.09000 * 109.47177 * 119.99391 * 2 1 3 30 30 H 1.08999 * 110.03048 * 23.00037 * 5 3 2 31 31 H 1.09001 * 110.06994 * 261.59987 * 5 3 2 32 32 H 1.09002 * 110.03268 * 119.28653 * 6 5 3 33 33 H 1.08995 * 110.03391 * 240.66959 * 6 5 3 34 34 H 1.08997 * 110.48585 * 95.09409 * 7 6 5 35 35 H 1.09002 * 110.48442 * 217.73292 * 7 6 5 36 36 H 0.97000 * 119.99592 * 0.02562 * 12 10 8 37 37 H 1.09002 * 109.47251 * 299.99990 * 13 12 10 38 38 H 1.09005 * 109.47146 * 59.99691 * 13 12 10 39 39 H 0.97006 * 119.99733 * 359.97438 * 16 14 13 40 40 H 0.96998 * 120.00104 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6315 1.9925 -0.8478 5 6 1.6757 2.1441 1.3247 6 6 2.8695 3.0443 1.6882 7 6 3.9186 2.8586 0.5725 8 6 3.5884 1.4702 -0.0312 9 1 4.0013 0.6709 0.5842 10 6 4.0960 1.3684 -1.4464 11 8 3.3115 1.2810 -2.3672 12 7 5.4218 1.3745 -1.6889 13 6 5.9152 1.2762 -3.0647 14 6 7.4219 1.3056 -3.0613 15 8 8.0243 1.4000 -2.0128 16 7 8.1001 1.2281 -4.2234 17 6 9.4708 1.2554 -4.2203 18 1 10.0071 1.3395 -3.2867 19 6 10.1699 1.1750 -5.4184 20 7 9.5174 1.0723 -6.5544 21 14 12.0376 1.2129 -5.4143 22 1 12.5541 0.0694 -4.6200 23 1 12.5378 1.1124 -6.8089 24 1 12.5055 2.4864 -4.8106 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.5148 1.4031 2.1077 31 1 0.7783 2.7488 1.1933 32 1 2.5517 4.0861 1.7324 33 1 3.2874 2.7407 2.6480 34 1 3.8140 3.6374 -0.1828 35 1 4.9252 2.8642 0.9907 36 1 6.0492 1.4441 -0.9524 37 1 5.5707 0.3421 -3.5084 38 1 5.5371 2.1163 -3.6473 39 1 7.6184 1.1530 -5.0620 40 1 10.0055 1.0165 -7.3908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451751918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:01 Heat of formation + Delta-G solvation = -108.482711 kcal Electronic energy + Delta-G solvation = -20340.452241 eV Core-core repulsion = 17153.618487 eV Total energy + Delta-G solvation = -3186.833754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12683 -38.44324 -37.39876 -34.45514 -33.73461 -33.16671 -31.39209 -29.82042 -27.68801 -27.27398 -24.55748 -22.97680 -21.59277 -19.90022 -19.73347 -19.37738 -18.12221 -17.34511 -15.80594 -15.71443 -15.24095 -15.10244 -14.79406 -14.37980 -14.24808 -13.97183 -13.61181 -13.36557 -13.14588 -13.00121 -12.24456 -12.12249 -11.99433 -11.82141 -11.63701 -11.38725 -11.26133 -11.10663 -10.77844 -10.62764 -10.51303 -10.51042 -10.49234 -10.31857 -9.63188 -9.54853 -8.75763 -8.63368 -8.10685 -6.51903 -3.94082 2.86858 3.13363 3.20949 3.23953 3.43007 3.73850 4.11023 4.34604 4.47274 4.62102 4.88472 5.01314 5.10793 5.16297 5.17737 5.26112 5.30553 5.41243 5.48442 5.53198 5.60165 5.73971 5.79281 5.86576 5.90272 5.96421 5.97438 6.03789 6.07690 6.08387 6.15607 6.28879 6.40069 6.72426 7.45248 7.85832 7.91500 8.44038 8.50815 9.03965 9.38825 9.86820 10.64940 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.003319 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.557547 B = 8433.277495 C = 8875.864828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.071 4.071 4 H 0.088 0.912 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.114 4.114 8 C -0.111 4.111 9 H 0.101 0.899 10 C 0.518 3.482 11 O -0.548 6.548 12 N -0.707 5.707 13 C 0.108 3.892 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.549 5.549 17 C -0.306 4.306 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.410 0.590 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.396 0.604 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.269 0.959 12.571 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.090 4.090 4 H 0.106 0.894 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.152 4.152 8 C -0.132 4.132 9 H 0.119 0.881 10 C 0.304 3.696 11 O -0.426 6.426 12 N -0.361 5.361 13 C -0.020 4.020 14 C 0.214 3.786 15 O -0.484 6.484 16 N -0.184 5.184 17 C -0.436 4.436 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.248 0.752 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.230 0.770 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.322 0.944 12.373 18.950 hybrid contribution 1.045 -0.033 -0.372 1.110 sum -13.277 0.911 12.000 17.919 Atomic orbital electron populations 1.21751 0.95919 1.01292 1.01704 1.21543 0.95879 0.95943 1.02006 1.21867 0.92314 0.96640 0.98195 0.89399 1.22236 0.98003 0.98470 0.97051 1.22113 0.95592 0.99936 0.98398 1.22344 0.99585 0.95285 0.98008 1.22368 0.97521 0.99830 0.93512 0.88112 1.20467 0.81978 0.76055 0.91135 1.90668 1.55723 1.50144 1.46113 1.45757 1.07074 1.73717 1.09543 1.20940 0.93915 1.03010 0.84087 1.19763 0.88128 0.85573 0.85184 1.90492 1.69548 1.57127 1.31273 1.41795 1.07351 1.62270 1.06955 1.19684 0.80917 1.48042 0.94909 0.87730 1.25325 1.00999 0.96748 0.94606 1.69606 1.36970 1.48921 0.98020 0.85873 0.81717 0.79153 0.77224 1.19767 1.20842 1.19765 0.92894 0.92660 0.93063 0.91484 0.92293 0.91650 0.91779 0.91702 0.91640 0.91054 0.90673 0.75187 0.89962 0.89977 0.77041 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.76 37.16 0.36 -0.98 16 2 C -0.12 -1.21 5.31 -26.73 -0.14 -1.35 16 3 C -0.07 -0.78 1.98 -88.96 -0.18 -0.95 16 4 H 0.09 1.13 7.44 -51.93 -0.39 0.74 16 5 C -0.12 -1.03 5.51 -25.62 -0.14 -1.18 16 6 C -0.12 -1.04 6.80 -25.61 -0.17 -1.22 16 7 C -0.11 -1.18 6.27 -25.03 -0.16 -1.34 16 8 C -0.11 -1.30 2.71 -89.74 -0.24 -1.55 16 9 H 0.10 1.06 8.06 -51.93 -0.42 0.65 16 10 C 0.52 8.09 7.13 -10.99 -0.08 8.01 16 11 O -0.55 -10.16 15.72 5.55 0.09 -10.08 16 12 N -0.71 -11.80 5.53 -61.48 -0.34 -12.14 16 13 C 0.11 2.02 6.15 -5.20 -0.03 1.99 16 14 C 0.43 9.85 7.85 -10.99 -0.09 9.77 16 15 O -0.60 -15.30 15.24 5.54 0.08 -15.21 16 16 N -0.55 -13.67 5.29 -10.97 -0.06 -13.73 16 17 C -0.31 -8.34 9.68 -14.93 -0.14 -8.48 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 20 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 21 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 25 H 0.05 0.42 7.49 -51.93 -0.39 0.03 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 30 H 0.06 0.51 7.77 -51.93 -0.40 0.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.41 6.73 7.44 -40.82 -0.30 6.42 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 331.28 15.07 4.99 4.99 Total: -1.00 -30.30 331.28 -7.01 -37.32 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -6.37 Total: 13.26 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.11 Total: 3.30 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.33 Total: -49.11 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.17 Total: -25.29 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.30 -7.01 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451751918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.164 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds