Wall clock time and date at job start Mon Mar 30 2020 01:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47130 * 2 1 4 4 H 1.08999 * 110.05399 * 53.25976 * 3 2 1 5 5 C 1.54268 * 110.03181 * 291.83746 * 3 2 1 6 6 C 1.54882 * 104.19824 * 217.10558 * 5 3 2 7 7 C 1.54887 * 102.74749 * 37.94308 * 6 5 3 8 8 C 1.53874 * 110.03005 * 174.67311 * 3 2 1 9 9 H 1.09003 * 110.03090 * 238.56639 * 8 3 2 10 10 C 1.50697 * 110.03720 * 359.97438 * 8 3 2 11 11 O 1.21283 * 119.99804 * 84.95468 * 10 8 3 12 12 N 1.34769 * 120.00101 * 264.95940 * 10 8 3 13 13 C 1.46502 * 120.00124 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47230 * 179.97438 * 13 12 10 15 15 O 1.21289 * 119.99884 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00322 * 179.97438 * 14 13 12 17 17 C 1.37090 * 120.00526 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99701 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00590 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99366 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00317 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47098 * 90.00265 * 21 19 17 23 23 H 1.48494 * 109.47019 * 209.99880 * 21 19 17 24 24 H 1.48496 * 109.47181 * 330.00428 * 21 19 17 25 25 H 1.08994 * 109.47455 * 300.00297 * 1 2 3 26 26 H 1.08998 * 109.46760 * 60.00102 * 1 2 3 27 27 H 1.09001 * 109.47400 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47422 * 240.00196 * 2 1 3 29 29 H 1.09004 * 109.47432 * 119.99842 * 2 1 3 30 30 H 1.09003 * 110.48349 * 98.42412 * 5 3 2 31 31 H 1.08997 * 110.48534 * 335.79014 * 5 3 2 32 32 H 1.09003 * 110.75418 * 279.63121 * 6 5 3 33 33 H 1.08992 * 110.75834 * 156.25990 * 6 5 3 34 34 H 1.09004 * 110.48688 * 203.37819 * 7 6 5 35 35 H 1.08996 * 110.48642 * 80.73930 * 7 6 5 36 36 H 0.97000 * 120.00286 * 359.97438 * 12 10 8 37 37 H 1.08996 * 109.46955 * 299.99960 * 13 12 10 38 38 H 1.08998 * 109.47018 * 60.00143 * 13 12 10 39 39 H 0.97000 * 119.99669 * 0.02562 * 16 14 13 40 40 H 0.97004 * 120.00043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5871 1.9991 0.8205 5 6 1.7078 2.1205 -1.3454 6 6 2.9377 3.0170 -1.6328 7 6 4.1185 2.1474 -1.1343 8 6 3.5728 1.4596 0.1342 9 1 3.8637 2.0246 1.0198 10 6 4.0989 0.0504 0.2249 11 8 4.3160 -0.5821 -0.7869 12 7 4.3280 -0.5071 1.4303 13 6 4.8390 -1.8773 1.5185 14 6 5.0077 -2.2583 2.9667 15 8 4.7290 -1.4633 3.8394 16 7 5.4682 -3.4824 3.2923 17 6 5.6221 -3.8289 4.6097 18 1 5.3740 -3.1210 5.3868 19 6 6.0964 -5.0910 4.9455 20 7 6.3978 -5.9525 3.9999 21 14 6.3068 -5.5628 6.7406 22 1 5.0499 -6.1742 7.2423 23 1 7.4178 -6.5397 6.8686 24 1 6.6198 -4.3497 7.5378 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.8066 2.7268 -1.2547 31 1 1.5886 1.3732 -2.1299 32 1 2.8778 3.9475 -1.0683 33 1 3.0289 3.2168 -2.7004 34 1 4.9766 2.7735 -0.8896 35 1 4.3887 1.4046 -1.8847 36 1 4.1547 -0.0011 2.2395 37 1 4.1342 -2.5591 1.0427 38 1 5.8024 -1.9391 1.0124 39 1 5.6914 -4.1180 2.5944 40 1 6.7285 -6.8338 4.2342 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451751920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:07 Heat of formation + Delta-G solvation = -104.227067 kcal Electronic energy + Delta-G solvation = -20683.954490 eV Core-core repulsion = 17497.305274 eV Total energy + Delta-G solvation = -3186.649215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38732 -38.43099 -37.23735 -34.44052 -33.67665 -33.14819 -31.39395 -29.82703 -27.70454 -27.25154 -24.53166 -22.89954 -21.47023 -20.63176 -19.66956 -19.01586 -18.04251 -16.90871 -16.22247 -15.64311 -15.29349 -15.07442 -14.77583 -14.48072 -14.31900 -13.84700 -13.76311 -13.33293 -13.27301 -12.59125 -12.21607 -12.14056 -11.85692 -11.64758 -11.57875 -11.32036 -11.14123 -11.12136 -10.90334 -10.71745 -10.57777 -10.46610 -10.46178 -10.32226 -9.64181 -9.52305 -8.73923 -8.63362 -8.10676 -6.52063 -3.94086 2.86980 3.11269 3.21393 3.26157 3.43247 3.73804 4.11065 4.39094 4.48730 4.61551 4.88312 5.06192 5.13495 5.16454 5.19427 5.27381 5.39161 5.45901 5.50018 5.55184 5.62805 5.75242 5.78658 5.89942 5.94709 5.97347 5.99752 6.06580 6.07700 6.11885 6.24547 6.29080 6.39101 6.72663 7.45391 7.86214 7.91654 8.44033 8.51324 9.04070 9.38865 9.86824 10.64859 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035974 B = 0.003620 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.142381 B = 7733.828740 C = 7952.021246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.075 4.075 4 H 0.079 0.921 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.111 4.111 9 H 0.090 0.910 10 C 0.523 3.477 11 O -0.550 6.550 12 N -0.709 5.709 13 C 0.108 3.892 14 C 0.428 3.572 15 O -0.597 6.597 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.269 1.269 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.410 0.590 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.396 0.604 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 13.415 -9.569 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.094 4.094 4 H 0.097 0.903 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.150 4.150 8 C -0.132 4.132 9 H 0.108 0.892 10 C 0.310 3.690 11 O -0.428 6.428 12 N -0.363 5.363 13 C -0.019 4.019 14 C 0.214 3.786 15 O -0.484 6.484 16 N -0.184 5.184 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.248 0.752 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.229 0.771 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.575 13.246 -9.660 18.060 hybrid contribution 0.258 -0.610 0.963 1.169 sum -7.316 12.636 -8.698 16.996 Atomic orbital electron populations 1.21745 0.95712 1.01611 1.01462 1.21870 0.96161 0.95790 1.03246 1.21709 0.92275 0.96907 0.98530 0.90279 1.22445 0.97704 0.98501 0.96767 1.22478 0.94756 0.97983 1.00864 1.22361 0.97627 0.98777 0.96274 1.22024 0.96759 0.93524 1.00916 0.89192 1.20365 0.76919 0.88647 0.83085 1.90654 1.52806 1.64042 1.35304 1.45840 1.66012 1.15419 1.08991 1.20934 1.00415 0.84020 0.96576 1.19767 0.85334 0.84142 0.89389 1.90493 1.56966 1.51091 1.49857 1.41799 1.55613 1.12028 1.08964 1.19730 1.41377 0.98994 0.83373 0.87692 1.25326 0.96646 0.95563 1.00180 1.69617 1.43732 1.07182 1.32969 0.85811 0.77998 0.78537 0.81682 1.20262 1.20792 1.19306 0.92872 0.92821 0.92810 0.90834 0.91409 0.91662 0.91183 0.91554 0.91430 0.91503 0.89589 0.75206 0.90012 0.89982 0.77056 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.77 37.16 0.36 -1.17 16 2 C -0.13 -1.64 4.12 -26.73 -0.11 -1.75 16 3 C -0.08 -0.80 2.93 -89.50 -0.26 -1.07 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.12 -1.08 5.55 -25.07 -0.14 -1.22 16 6 C -0.12 -1.08 6.91 -24.74 -0.17 -1.25 16 7 C -0.11 -1.22 6.32 -25.07 -0.16 -1.38 16 8 C -0.11 -1.32 3.29 -90.65 -0.30 -1.61 16 9 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 10 C 0.52 8.12 4.67 -10.99 -0.05 8.07 16 11 O -0.55 -10.06 14.98 5.56 0.08 -9.98 16 12 N -0.71 -11.77 5.05 -61.47 -0.31 -12.08 16 13 C 0.11 2.01 6.15 -5.19 -0.03 1.98 16 14 C 0.43 9.84 7.85 -10.99 -0.09 9.75 16 15 O -0.60 -15.29 15.24 5.55 0.08 -15.20 16 16 N -0.55 -13.67 5.29 -10.97 -0.06 -13.72 16 17 C -0.31 -8.31 9.68 -14.94 -0.14 -8.46 16 18 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 20 N -0.89 -23.94 13.05 55.50 0.72 -23.21 16 21 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.49 7.52 -51.93 -0.39 0.10 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.04 7.06 -51.93 -0.37 0.67 16 29 H 0.07 0.96 6.85 -51.93 -0.36 0.60 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.70 7.75 -51.93 -0.40 0.30 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.11 6.91 -51.93 -0.36 0.75 16 36 H 0.41 6.74 7.43 -40.82 -0.30 6.44 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.40 9.49 7.90 -40.82 -0.32 9.16 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -30.19 325.53 -7.02 -37.20 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -6.24 Total: 14.10 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.19 Total: 2.47 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.36 Total: -49.02 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.17 Total: -25.18 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.19 -7.02 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451751920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.023 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds