Wall clock time and date at job start Mon Mar 30 2020 00:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46765 * 124.34655 * 2 1 4 4 C 1.54478 * 105.47457 * 197.04062 * 3 2 1 5 5 H 1.08998 * 111.00056 * 216.45196 * 4 3 2 6 6 C 1.50700 * 110.97000 * 92.70374 * 4 3 2 7 7 O 1.21283 * 119.99858 * 6.16749 * 6 4 3 8 8 N 1.34776 * 120.00069 * 186.16772 * 6 4 3 9 9 C 1.46501 * 120.00112 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47141 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46854 * 60.00332 * 10 9 8 12 12 C 1.52998 * 109.47545 * 300.00137 * 10 9 8 13 13 C 1.50700 * 109.47098 * 179.97438 * 10 9 8 14 14 H 1.07997 * 120.00169 * 4.92262 * 13 10 9 15 15 C 1.37878 * 120.00052 * 184.92283 * 13 10 9 16 16 N 1.31513 * 119.99795 * 351.63847 * 15 13 10 17 17 Si 1.86797 * 119.99811 * 171.63243 * 15 13 10 18 18 H 1.48501 * 109.47038 * 90.00536 * 17 15 13 19 19 H 1.48500 * 109.47462 * 330.00199 * 17 15 13 20 20 H 1.48507 * 109.47159 * 209.99916 * 17 15 13 21 21 C 1.54631 * 101.76504 * 334.58827 * 4 3 2 22 22 C 1.34416 * 124.35229 * 180.02562 * 2 1 3 23 23 O 1.21284 * 124.94160 * 359.53148 * 22 2 1 24 24 H 1.09004 * 109.46744 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47109 * 299.94268 * 1 2 3 26 26 H 1.09000 * 109.47299 * 59.95161 * 1 2 3 27 27 H 1.09002 * 110.24168 * 78.03847 * 3 2 1 28 28 H 1.09000 * 110.24631 * 316.04262 * 3 2 1 29 29 H 0.96998 * 119.99818 * 359.97438 * 8 6 4 30 30 H 1.09003 * 109.46980 * 60.00092 * 9 8 6 31 31 H 1.08996 * 109.47069 * 299.99977 * 9 8 6 32 32 H 1.09004 * 109.47336 * 172.91539 * 11 10 9 33 33 H 1.09006 * 109.46960 * 292.91579 * 11 10 9 34 34 H 1.08993 * 109.47276 * 52.91349 * 11 10 9 35 35 H 1.08997 * 109.46856 * 307.36146 * 12 10 9 36 36 H 1.09001 * 109.47080 * 67.35581 * 12 10 9 37 37 H 1.08998 * 109.47209 * 187.35359 * 12 10 9 38 38 H 0.96993 * 120.00488 * 5.71100 * 16 15 13 39 39 H 1.08995 * 110.48742 * 143.47873 * 21 4 3 40 40 H 1.09007 * 110.48415 * 265.98823 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7008 0.7490 -0.4363 5 1 4.4758 1.3011 0.0954 6 6 3.8743 0.8822 -1.9273 7 8 3.0099 1.4112 -2.5935 8 7 4.9901 0.4134 -2.5205 9 6 5.1590 0.5434 -3.9699 10 6 6.5010 -0.0640 -4.3834 11 6 6.5314 -1.5442 -3.9972 12 6 7.6360 0.6728 -3.6696 13 6 6.6745 0.0691 -5.8745 14 1 5.9431 0.6096 -6.4571 15 6 7.7669 -0.4990 -6.4949 16 7 8.7391 -1.0130 -5.7737 17 14 7.8658 -0.5388 -8.3598 18 1 8.5417 0.6909 -8.8460 19 1 6.4951 -0.6074 -8.9270 20 1 8.6395 -1.7315 -8.7892 21 6 3.6898 -0.7377 -0.0112 22 6 2.2235 -1.1097 -0.0005 23 8 1.7947 -2.2442 0.0071 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5129 0.8904 26 1 -0.3634 0.5146 -0.8895 27 1 2.3308 1.6427 1.0005 28 1 1.8981 1.9385 -0.7098 29 1 5.6816 -0.0094 -1.9876 30 1 5.1377 1.5979 -4.2450 31 1 4.3502 0.0188 -4.4784 32 1 7.4316 -2.0069 -4.4018 33 1 6.5324 -1.6363 -2.9110 34 1 5.6521 -2.0439 -4.4034 35 1 7.5367 1.7448 -3.8396 36 1 7.5859 0.4684 -2.6001 37 1 8.5941 0.3301 -4.0605 38 1 8.6509 -1.0675 -4.8093 39 1 4.2325 -1.3455 -0.7351 40 1 4.1220 -0.8534 0.9829 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:16 Heat of formation + Delta-G solvation = -70.220434 kcal Electronic energy + Delta-G solvation = -21209.914347 eV Core-core repulsion = 18024.739770 eV Total energy + Delta-G solvation = -3185.174577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92217 -39.05764 -36.99306 -36.16072 -33.80782 -32.95657 -30.54893 -27.88459 -27.17862 -26.10416 -25.96247 -24.65087 -22.79874 -20.09840 -19.69991 -18.96638 -17.91687 -16.89561 -16.63922 -15.71462 -15.62875 -15.28897 -14.88805 -13.91447 -13.83135 -13.76190 -13.67409 -13.30652 -12.86333 -12.67656 -12.55065 -12.45884 -12.24717 -12.00404 -11.66046 -11.56542 -11.32354 -10.97825 -10.67206 -10.63129 -10.13373 -9.96598 -9.94508 -9.70145 -9.55132 -8.87928 -8.61933 -8.56162 -8.23616 -6.30060 -4.14535 2.45408 2.76336 2.88373 3.39719 3.43786 3.45983 3.60546 4.08447 4.16886 4.48067 4.58984 4.80216 5.10201 5.12707 5.14694 5.28637 5.33759 5.40084 5.54801 5.57208 5.59813 5.93900 6.10260 6.19915 6.31359 6.50282 6.54632 6.63997 6.73494 6.77291 6.93151 7.02551 7.03595 7.44961 7.60887 7.83938 8.02907 8.13991 8.36201 8.46759 8.80263 9.55821 10.96167 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033563 B = 0.004195 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.047286 B = 6673.609149 C = 6725.889218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.619 5.619 3 C 0.117 3.883 4 C -0.128 4.128 5 H 0.125 0.875 6 C 0.511 3.489 7 O -0.543 6.543 8 N -0.714 5.714 9 C 0.140 3.860 10 C 0.041 3.959 11 C -0.146 4.146 12 C -0.144 4.144 13 C -0.587 4.587 14 H 0.052 0.948 15 C 0.027 3.973 16 N -0.916 5.916 17 Si 1.067 2.933 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.284 1.284 21 C -0.148 4.148 22 C 0.518 3.482 23 O -0.533 6.533 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.398 0.602 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.016 0.984 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.015 0.985 37 H 0.071 0.929 38 H 0.281 0.719 39 H 0.108 0.892 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 4.267 13.965 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.353 5.353 3 C -0.006 4.006 4 C -0.150 4.150 5 H 0.143 0.857 6 C 0.296 3.704 7 O -0.421 6.421 8 N -0.365 5.365 9 C 0.017 3.983 10 C 0.040 3.960 11 C -0.204 4.204 12 C -0.202 4.202 13 C -0.626 4.626 14 H 0.070 0.930 15 C -0.177 4.177 16 N -0.556 5.556 17 Si 0.895 3.105 18 H -0.215 1.215 19 H -0.214 1.214 20 H -0.210 1.210 21 C -0.188 4.188 22 C 0.305 3.695 23 O -0.410 6.410 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.233 0.767 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.828 3.620 12.199 15.487 hybrid contribution -0.638 0.375 1.514 1.685 sum -9.465 3.995 13.713 17.135 Atomic orbital electron populations 1.21550 0.77902 1.03657 1.01597 1.48069 1.06691 1.07256 1.73327 1.22001 0.88668 0.87957 1.02023 1.22352 0.99660 0.97705 0.95233 0.85680 1.20126 0.82412 0.78885 0.89012 1.90680 1.41875 1.44159 1.65427 1.46275 1.19902 1.59510 1.10767 1.21637 0.99499 1.00513 0.76619 1.18537 0.89264 0.91497 0.96722 1.22050 1.02584 0.99181 0.96610 1.22083 1.02471 0.99610 0.96015 1.21752 1.11960 1.38175 0.90689 0.92965 1.25663 0.91829 0.93507 1.06703 1.70848 1.31417 1.44151 1.09228 0.83579 0.75635 0.76788 0.74474 1.21521 1.21444 1.21015 1.22389 0.95611 0.95440 1.05379 1.20805 0.89153 0.84439 0.75059 1.90724 1.78579 1.21059 1.50649 0.90023 0.92088 0.91779 0.90314 0.88295 0.76711 0.92425 0.92436 0.90817 0.96489 0.94376 0.94484 0.96612 0.91029 0.90290 0.87326 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 11.14 59.85 0.67 1.60 16 2 N -0.62 -7.36 3.33 -180.29 -0.60 -7.96 16 3 C 0.12 1.14 6.73 -3.12 -0.02 1.12 16 4 C -0.13 -1.31 3.54 -90.14 -0.32 -1.63 16 5 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 6 C 0.51 7.86 7.16 -10.99 -0.08 7.78 16 7 O -0.54 -10.38 15.51 5.55 0.09 -10.29 16 8 N -0.71 -11.58 4.76 -60.29 -0.29 -11.86 16 9 C 0.14 2.85 4.50 -4.04 -0.02 2.84 16 10 C 0.04 0.91 0.50 -155.66 -0.08 0.83 16 11 C -0.15 -3.18 7.85 37.16 0.29 -2.89 16 12 C -0.14 -3.05 7.91 37.16 0.29 -2.76 16 13 C -0.59 -15.42 8.00 -34.44 -0.28 -15.69 16 14 H 0.05 1.40 7.76 -52.49 -0.41 0.99 16 15 C 0.03 0.73 5.07 -17.82 -0.09 0.64 16 16 N -0.92 -25.46 12.17 55.43 0.67 -24.79 16 17 Si 1.07 24.31 29.91 -169.99 -5.08 19.22 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.15 -1.56 6.39 -26.74 -0.17 -1.73 16 22 C 0.52 7.27 8.02 -10.86 -0.09 7.18 16 23 O -0.53 -9.51 17.35 5.55 0.10 -9.42 16 24 H 0.08 0.88 7.53 -51.93 -0.39 0.49 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 1.10 6.94 -51.93 -0.36 0.74 16 29 H 0.40 5.64 6.11 -40.82 -0.25 5.39 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.78 5.16 -51.93 -0.27 1.51 16 33 H 0.02 0.30 7.05 -51.93 -0.37 -0.06 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.01 0.27 7.05 -51.93 -0.37 -0.10 16 37 H 0.07 1.70 5.30 -51.93 -0.28 1.43 16 38 H 0.28 7.51 3.59 -40.82 -0.15 7.36 16 39 H 0.11 1.26 7.51 -51.93 -0.39 0.87 16 40 H 0.12 0.86 8.14 -51.92 -0.42 0.44 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -32.82 318.45 -6.02 -38.84 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.82 Total: 4.17 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 0.11 Total: -2.72 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.21 Total: -44.61 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.18 Total: -19.71 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.82 -6.02 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.377 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds