Wall clock time and date at job start Mon Mar 30 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46765 * 124.34655 * 2 1 4 4 C 1.54478 * 105.47457 * 197.04062 * 3 2 1 5 5 H 1.08998 * 111.00056 * 216.45196 * 4 3 2 6 6 C 1.50700 * 110.97000 * 92.70374 * 4 3 2 7 7 O 1.21283 * 119.99858 * 6.16749 * 6 4 3 8 8 N 1.34776 * 120.00069 * 186.16772 * 6 4 3 9 9 C 1.46501 * 120.00112 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47141 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46854 * 60.00332 * 10 9 8 12 12 C 1.52998 * 109.47545 * 300.00137 * 10 9 8 13 13 C 1.50700 * 109.47098 * 179.97438 * 10 9 8 14 14 H 1.07997 * 120.00169 * 4.92262 * 13 10 9 15 15 C 1.37878 * 120.00052 * 184.92283 * 13 10 9 16 16 N 1.31513 * 119.99795 * 351.63847 * 15 13 10 17 17 Si 1.86797 * 119.99811 * 171.63243 * 15 13 10 18 18 H 1.48501 * 109.47038 * 90.00536 * 17 15 13 19 19 H 1.48500 * 109.47462 * 330.00199 * 17 15 13 20 20 H 1.48507 * 109.47159 * 209.99916 * 17 15 13 21 21 C 1.54631 * 101.76504 * 334.58827 * 4 3 2 22 22 C 1.34416 * 124.35229 * 180.02562 * 2 1 3 23 23 O 1.21284 * 124.94160 * 359.53148 * 22 2 1 24 24 H 1.09004 * 109.46744 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47109 * 299.94268 * 1 2 3 26 26 H 1.09000 * 109.47299 * 59.95161 * 1 2 3 27 27 H 1.09002 * 110.24168 * 78.03847 * 3 2 1 28 28 H 1.09000 * 110.24631 * 316.04262 * 3 2 1 29 29 H 0.96998 * 119.99818 * 359.97438 * 8 6 4 30 30 H 1.09003 * 109.46980 * 60.00092 * 9 8 6 31 31 H 1.08996 * 109.47069 * 299.99977 * 9 8 6 32 32 H 1.09004 * 109.47336 * 172.91539 * 11 10 9 33 33 H 1.09006 * 109.46960 * 292.91579 * 11 10 9 34 34 H 1.08993 * 109.47276 * 52.91349 * 11 10 9 35 35 H 1.08997 * 109.46856 * 307.36146 * 12 10 9 36 36 H 1.09001 * 109.47080 * 67.35581 * 12 10 9 37 37 H 1.08998 * 109.47209 * 187.35359 * 12 10 9 38 38 H 0.96993 * 120.00488 * 5.71100 * 16 15 13 39 39 H 1.08995 * 110.48742 * 143.47873 * 21 4 3 40 40 H 1.09007 * 110.48415 * 265.98823 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7008 0.7490 -0.4363 5 1 4.4758 1.3011 0.0954 6 6 3.8743 0.8822 -1.9273 7 8 3.0099 1.4112 -2.5935 8 7 4.9901 0.4134 -2.5205 9 6 5.1590 0.5434 -3.9699 10 6 6.5010 -0.0640 -4.3834 11 6 6.5314 -1.5442 -3.9972 12 6 7.6360 0.6728 -3.6696 13 6 6.6745 0.0691 -5.8745 14 1 5.9431 0.6096 -6.4571 15 6 7.7669 -0.4990 -6.4949 16 7 8.7391 -1.0130 -5.7737 17 14 7.8658 -0.5388 -8.3598 18 1 8.5417 0.6909 -8.8460 19 1 6.4951 -0.6074 -8.9270 20 1 8.6395 -1.7315 -8.7892 21 6 3.6898 -0.7377 -0.0112 22 6 2.2235 -1.1097 -0.0005 23 8 1.7947 -2.2442 0.0071 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5129 0.8904 26 1 -0.3634 0.5146 -0.8895 27 1 2.3308 1.6427 1.0005 28 1 1.8981 1.9385 -0.7098 29 1 5.6816 -0.0094 -1.9876 30 1 5.1377 1.5979 -4.2450 31 1 4.3502 0.0188 -4.4784 32 1 7.4316 -2.0069 -4.4018 33 1 6.5324 -1.6363 -2.9110 34 1 5.6521 -2.0439 -4.4034 35 1 7.5367 1.7448 -3.8396 36 1 7.5859 0.4684 -2.6001 37 1 8.5941 0.3301 -4.0605 38 1 8.6509 -1.0675 -4.8093 39 1 4.2325 -1.3455 -0.7351 40 1 4.1220 -0.8534 0.9829 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:15 Heat of formation + Delta-G solvation = -93.153578 kcal Electronic energy + Delta-G solvation = -21210.908803 eV Core-core repulsion = 18024.739770 eV Total energy + Delta-G solvation = -3186.169033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94515 -40.33948 -38.62958 -37.29661 -35.33658 -33.97638 -32.29968 -28.80840 -28.23161 -27.85460 -27.54314 -26.31231 -23.94576 -21.34567 -20.81094 -20.58327 -19.26190 -18.26794 -17.80960 -16.98153 -16.74021 -16.46895 -16.17247 -15.63529 -15.30822 -14.93350 -14.71041 -14.60453 -14.48117 -14.28702 -13.55452 -13.39727 -13.29475 -13.18819 -13.13653 -12.90886 -12.70684 -12.52718 -12.46923 -12.42472 -11.94197 -11.70992 -11.39967 -11.03819 -10.92102 -10.51966 -10.23138 -10.04437 -9.77025 -8.38205 -6.23866 1.44775 1.55437 1.57301 1.62341 1.79871 2.04371 2.22277 2.60436 3.23329 3.24912 3.31729 3.66907 3.87729 4.18264 4.31718 4.32454 4.37535 4.45252 4.48885 4.63465 4.67828 4.77805 4.80619 4.82613 4.83383 4.85690 4.91436 4.98673 5.17127 5.22359 5.43085 5.47181 5.65194 5.84571 6.02816 6.16676 6.33130 6.56506 6.77389 7.04312 7.23367 7.51391 8.89935 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033563 B = 0.004195 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.047286 B = 6673.609149 C = 6725.889218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.622 5.622 3 C 0.115 3.885 4 C -0.112 4.112 5 H 0.176 0.824 6 C 0.506 3.494 7 O -0.585 6.585 8 N -0.709 5.709 9 C 0.158 3.842 10 C 0.034 3.966 11 C -0.137 4.137 12 C -0.133 4.133 13 C -0.606 4.606 14 H 0.035 0.965 15 C -0.013 4.013 16 N -0.937 5.937 17 Si 1.103 2.897 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.284 1.284 21 C -0.139 4.139 22 C 0.499 3.501 23 O -0.586 6.586 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.411 0.589 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.024 0.976 35 H 0.031 0.969 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.281 0.719 39 H 0.098 0.902 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 5.277 16.351 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.355 5.355 3 C -0.007 4.007 4 C -0.133 4.133 5 H 0.193 0.807 6 C 0.293 3.707 7 O -0.466 6.466 8 N -0.360 5.360 9 C 0.033 3.967 10 C 0.033 3.967 11 C -0.195 4.195 12 C -0.191 4.191 13 C -0.644 4.644 14 H 0.053 0.947 15 C -0.213 4.213 16 N -0.578 5.578 17 Si 0.927 3.073 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.210 1.210 21 C -0.179 4.179 22 C 0.289 3.711 23 O -0.467 6.467 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.102 0.898 29 H 0.249 0.751 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.484 4.670 14.619 17.536 hybrid contribution -0.830 0.109 0.781 1.145 sum -9.313 4.779 15.400 18.621 Atomic orbital electron populations 1.21679 0.77320 1.03104 1.03152 1.48335 1.07537 1.07656 1.71948 1.22251 0.87650 0.86659 1.04173 1.22440 1.01620 0.98301 0.90987 0.80657 1.21113 0.80997 0.77240 0.91324 1.90672 1.43073 1.45782 1.67072 1.46070 1.21037 1.60020 1.08863 1.21084 0.97421 0.98793 0.79360 1.18542 0.90768 0.92396 0.94995 1.21908 1.00633 0.98073 0.98869 1.21906 1.00165 0.98849 0.98155 1.22095 1.11408 1.37803 0.93107 0.94688 1.26677 0.91754 0.93199 1.09714 1.70896 1.32059 1.45267 1.09607 0.83089 0.75979 0.77102 0.71098 1.20354 1.20748 1.20986 1.22445 0.93081 0.94922 1.07472 1.21514 0.91006 0.84126 0.74498 1.90691 1.79726 1.23051 1.53267 0.91660 0.88878 0.91840 0.85666 0.89757 0.75146 0.94010 0.95086 0.93248 0.92721 0.95644 0.94949 0.92628 0.93612 0.90344 0.88331 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.64 11.14 127.77 1.42 3.07 16 2 N -0.62 -13.45 3.33 -842.90 -2.81 -16.26 16 3 C 0.11 1.80 6.73 86.83 0.58 2.38 16 4 C -0.11 -1.82 3.54 -10.48 -0.04 -1.85 16 5 H 0.18 1.21 8.14 -2.39 -0.02 1.19 16 6 C 0.51 14.46 7.16 87.66 0.63 15.09 16 7 O -0.59 -22.01 15.51 -3.04 -0.05 -22.06 16 8 N -0.71 -21.52 4.76 -463.06 -2.21 -23.73 16 9 C 0.16 6.44 4.50 86.38 0.39 6.83 16 10 C 0.03 1.51 0.50 -52.93 -0.03 1.48 16 11 C -0.14 -5.86 7.85 71.98 0.57 -5.29 16 12 C -0.13 -5.45 7.91 71.98 0.57 -4.88 16 13 C -0.61 -32.34 8.00 25.60 0.20 -32.13 16 14 H 0.03 1.93 7.76 -2.91 -0.02 1.91 16 15 C -0.01 -0.72 5.07 84.66 0.43 -0.29 16 16 N -0.94 -52.39 12.17 21.45 0.26 -52.13 16 17 Si 1.10 49.37 29.91 68.60 2.05 51.43 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 C -0.14 -2.42 6.39 30.59 0.20 -2.22 16 22 C 0.50 13.22 8.02 87.90 0.71 13.92 16 23 O -0.59 -20.96 17.35 -3.04 -0.05 -21.02 16 24 H 0.06 1.42 7.53 -2.38 -0.02 1.40 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 27 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.65 6.94 -2.39 -0.02 1.64 16 29 H 0.41 10.19 6.11 -92.71 -0.57 9.63 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 2.37 5.16 -2.38 -0.01 2.36 16 33 H 0.05 1.87 7.05 -2.38 -0.02 1.85 16 34 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.79 7.05 -2.39 -0.02 1.78 16 37 H 0.05 2.14 5.30 -2.39 -0.01 2.12 16 38 H 0.28 15.08 3.59 -92.71 -0.33 14.75 16 39 H 0.10 1.98 7.51 -2.39 -0.02 1.96 16 40 H 0.16 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -75.23 318.45 3.74 -71.49 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.91 Total: 16.18 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.63 Total: -3.90 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -4.75 Total: -92.11 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.10 Total: -43.08 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.43 kcal Total: -75.23 3.74 -71.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.668 kcal (2) G-P(sol) polarization free energy of solvation -75.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds