Wall clock time and date at job start Mon Mar 30 2020 01:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47216 * 2 1 4 4 N 1.46505 * 109.47165 * 119.99459 * 2 1 3 5 5 C 1.46501 * 119.99678 * 118.76266 * 4 2 1 6 6 C 1.50698 * 109.46837 * 84.22707 * 5 4 2 7 7 H 1.08001 * 120.00131 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99631 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00123 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99706 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47327 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46774 * 120.00406 * 10 8 6 13 13 H 1.48499 * 109.47453 * 240.00174 * 10 8 6 14 14 C 1.34772 * 119.99978 * 298.76799 * 4 2 1 15 15 O 1.21280 * 120.00380 * 4.65305 * 14 4 2 16 16 C 1.50701 * 119.99667 * 184.64903 * 14 4 2 17 17 H 1.08999 * 109.67153 * 45.10378 * 16 14 4 18 18 C 1.53353 * 109.67147 * 165.60137 * 16 14 4 19 19 C 1.52892 * 108.68873 * 187.21826 * 18 16 14 20 20 N 1.45758 * 110.52245 * 309.32970 * 19 18 16 21 21 C 1.33352 * 124.10609 * 19.01724 * 20 19 18 22 22 O 1.21274 * 118.24657 * 177.82537 * 21 20 19 23 23 C 1.50175 * 123.50923 * 357.79433 * 21 20 19 24 24 H 1.09003 * 109.47578 * 296.64126 * 1 2 3 25 25 H 1.09005 * 109.47026 * 56.63876 * 1 2 3 26 26 H 1.08996 * 109.47263 * 176.63643 * 1 2 3 27 27 H 1.08998 * 109.47827 * 239.99903 * 2 1 3 28 28 H 1.09000 * 109.47246 * 184.63612 * 3 2 1 29 29 H 1.09000 * 109.47249 * 304.63574 * 3 2 1 30 30 H 1.09003 * 109.47072 * 64.63584 * 3 2 1 31 31 H 1.08998 * 109.47128 * 324.22671 * 5 4 2 32 32 H 1.08996 * 109.46769 * 204.22644 * 5 4 2 33 33 H 0.97006 * 120.00232 * 359.97438 * 9 8 6 34 34 H 1.09002 * 109.60157 * 307.02003 * 18 16 14 35 35 H 1.09001 * 109.60373 * 67.50849 * 18 16 14 36 36 H 1.08999 * 109.31319 * 188.99195 * 19 18 16 37 37 H 1.08994 * 109.08670 * 69.52964 * 19 18 16 38 38 H 0.97005 * 117.94588 * 199.03961 * 20 19 18 39 39 H 1.08994 * 109.40709 * 257.45836 * 23 21 20 40 40 H 1.09001 * 109.39948 * 137.71070 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8380 -1.8973 1.0620 6 6 4.2786 -1.5056 0.8560 7 1 4.5558 -0.4621 0.8283 8 6 5.2428 -2.4794 0.7040 9 7 4.9053 -3.7500 0.7383 10 14 7.0283 -1.9939 0.4479 11 1 7.1437 -0.5133 0.4481 12 1 7.8561 -2.5546 1.5459 13 1 7.5048 -2.5277 -0.8533 14 6 1.7133 -0.2156 2.4201 15 8 0.9660 0.7328 2.5338 16 6 2.3009 -0.8632 3.6475 17 1 3.3649 -1.0434 3.4936 18 6 2.1027 0.0542 4.8603 19 6 2.8606 -0.5358 6.0499 20 7 2.5180 -1.9413 6.2278 21 6 1.9680 -2.7026 5.2811 22 8 1.7633 -3.8714 5.5314 23 6 1.5879 -2.1897 3.9218 24 1 -0.3634 0.4608 0.9186 25 1 -0.3633 0.5652 -0.8584 26 1 -0.3633 -1.0258 -0.0603 27 1 1.8934 -0.5138 -0.8899 28 1 3.1268 1.4437 -0.0831 29 1 1.6104 1.9798 -0.8455 30 1 1.7460 1.9319 0.9286 31 1 2.4932 -2.4774 0.2061 32 1 2.7508 -2.4982 1.9672 33 1 3.9780 -4.0021 0.8709 34 1 2.4910 1.0474 4.6348 35 1 1.0414 0.1195 5.0998 36 1 2.5995 0.0157 6.9531 37 1 3.9318 -0.4461 5.8700 38 1 2.7012 -2.3484 7.0891 39 1 0.5096 -2.0364 3.8810 40 1 1.8774 -2.9194 3.1655 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532109901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:06 Heat of formation + Delta-G solvation = -106.801851 kcal Electronic energy + Delta-G solvation = -22002.386527 eV Core-core repulsion = 18815.625661 eV Total energy + Delta-G solvation = -3186.760866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.87676 -40.62432 -37.66923 -36.99683 -35.44684 -34.36244 -32.63719 -30.68158 -28.51639 -28.07147 -26.41184 -24.82459 -24.50243 -22.62460 -20.26008 -19.88474 -19.10783 -18.35873 -17.83788 -17.29476 -16.91411 -16.35073 -16.01216 -15.65112 -15.29570 -15.18463 -15.08706 -14.60107 -14.47109 -14.27424 -14.02146 -13.52972 -13.44000 -12.95272 -12.87125 -12.69813 -12.59999 -12.52259 -12.19284 -12.04658 -12.03340 -11.95239 -11.85616 -11.22640 -11.13517 -10.58624 -10.28238 -10.11066 -9.43859 -8.61674 -6.40806 1.47308 1.54277 1.60873 1.66766 1.77098 2.21054 2.28354 2.55096 3.14277 3.35750 3.63150 3.65068 3.76494 3.95897 4.18918 4.22691 4.24677 4.35248 4.40385 4.46325 4.63191 4.69679 4.76448 4.76910 4.88699 4.91835 4.95493 4.97542 5.03852 5.18674 5.27863 5.36683 5.79497 5.81445 5.83828 6.13701 6.21633 6.49345 6.68006 7.11903 7.26736 7.39876 8.72302 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.009033 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.437798 B = 3098.860950 C = 4414.012661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 C -0.153 4.153 4 N -0.590 5.590 5 C 0.227 3.773 6 C -0.613 4.613 7 H 0.049 0.951 8 C -0.021 4.021 9 N -0.931 5.931 10 Si 1.113 2.887 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.522 3.478 15 O -0.568 6.568 16 C -0.106 4.106 17 H 0.094 0.906 18 C -0.108 4.108 19 C 0.111 3.889 20 N -0.705 5.705 21 C 0.527 3.473 22 O -0.603 6.603 23 C -0.122 4.122 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.006 0.994 32 H 0.038 0.962 33 H 0.259 0.741 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.409 0.591 39 H 0.107 0.893 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 9.773 6.628 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 C -0.211 4.211 4 N -0.319 5.319 5 C 0.106 3.894 6 C -0.652 4.652 7 H 0.068 0.932 8 C -0.221 4.221 9 N -0.568 5.568 10 Si 0.936 3.064 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.208 1.208 14 C 0.311 3.689 15 O -0.450 6.450 16 C -0.128 4.128 17 H 0.112 0.888 18 C -0.146 4.146 19 C -0.012 4.012 20 N -0.356 5.356 21 C 0.314 3.686 22 O -0.486 6.486 23 C -0.162 4.162 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.245 0.755 39 H 0.126 0.874 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.396 9.193 6.332 11.668 hybrid contribution -1.321 -0.080 0.074 1.326 sum -4.717 9.113 6.406 12.097 Atomic orbital electron populations 1.22119 0.94092 1.01635 1.03558 1.21066 0.94767 0.93613 0.87217 1.22036 1.00281 0.95589 1.03158 1.48144 1.50213 1.27990 1.05595 1.19463 0.90027 0.83158 0.96748 1.22529 0.93429 0.94937 1.54267 0.93221 1.27028 1.09079 0.92904 0.93110 1.70879 1.20562 1.17930 1.47398 0.82959 0.70631 0.75554 0.77276 1.19738 1.20671 1.20798 1.20480 0.80385 0.83297 0.84748 1.90530 1.37859 1.29620 1.86991 1.21388 1.01602 0.95401 0.94396 0.88829 1.21687 1.02341 0.98906 0.91643 1.21669 1.00119 0.79412 1.00016 1.45383 1.61672 1.12852 1.15698 1.20018 0.76370 0.85299 0.86905 1.90720 1.57225 1.18871 1.81785 1.21639 1.02805 0.97252 0.94529 0.91670 0.89884 0.93532 0.90742 0.94070 0.89919 0.92035 0.97558 0.94488 0.93129 0.88590 0.90163 0.86049 0.90375 0.75460 0.87441 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 9.18 71.98 0.66 -4.12 16 2 C 0.14 4.85 3.27 44.99 0.15 5.00 16 3 C -0.15 -5.00 9.17 71.98 0.66 -4.34 16 4 N -0.59 -23.53 2.41 -802.15 -1.93 -25.46 16 5 C 0.23 10.53 4.05 85.63 0.35 10.88 16 6 C -0.61 -31.24 9.16 25.60 0.23 -31.00 16 7 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 8 C -0.02 -1.13 5.46 84.66 0.46 -0.67 16 9 N -0.93 -53.31 13.65 21.45 0.29 -53.02 16 10 Si 1.11 47.43 29.90 68.60 2.05 49.48 16 11 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 14 C 0.52 19.46 6.28 87.66 0.55 20.01 16 15 O -0.57 -21.62 12.30 -3.03 -0.04 -21.66 16 16 C -0.11 -3.49 1.74 -11.40 -0.02 -3.51 16 17 H 0.09 3.49 7.41 -2.39 -0.02 3.48 16 18 C -0.11 -2.59 4.63 30.68 0.14 -2.45 16 19 C 0.11 2.03 7.17 86.48 0.62 2.65 16 20 N -0.71 -17.03 5.45 -467.37 -2.55 -19.58 16 21 C 0.53 17.64 7.71 87.71 0.68 18.32 16 22 O -0.60 -25.12 17.78 -3.01 -0.05 -25.17 16 23 C -0.12 -4.13 5.06 29.71 0.15 -3.98 16 24 H 0.06 2.18 6.02 -2.39 -0.01 2.16 16 25 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 2.74 7.88 -2.39 -0.02 2.72 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 2.15 6.12 -2.39 -0.01 2.13 16 31 H 0.01 0.32 7.92 -2.39 -0.02 0.30 16 32 H 0.04 1.76 3.91 -2.39 -0.01 1.75 16 33 H 0.26 14.93 7.22 -92.70 -0.67 14.26 16 34 H 0.10 2.22 8.12 -2.39 -0.02 2.20 16 35 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 36 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.41 8.34 8.80 -92.70 -0.82 7.52 16 39 H 0.11 3.37 8.09 -2.39 -0.02 3.35 16 40 H 0.09 3.52 5.62 -2.39 -0.01 3.50 16 Total: -1.00 -66.04 317.61 2.74 -63.31 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.33 Total: 25.32 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 4.63 Total: 6.79 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -4.19 Total: -98.06 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.09 Total: -46.83 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.05 Total: 49.48 kcal Total: -66.04 2.74 -63.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532109901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.495 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds