Wall clock time and date at job start Mon Mar 30 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47558 * 2 1 4 4 N 1.46498 * 109.47416 * 120.00521 * 2 1 3 5 5 C 1.46501 * 119.99660 * 294.08775 * 4 2 1 6 6 C 1.50699 * 109.46950 * 269.99567 * 5 4 2 7 7 H 1.07998 * 120.00380 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00183 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00192 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99711 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47106 * 89.99926 * 10 8 6 12 12 H 1.48495 * 109.46948 * 209.99489 * 10 8 6 13 13 H 1.48496 * 109.47311 * 329.99968 * 10 8 6 14 14 C 1.34777 * 120.00608 * 114.08510 * 4 2 1 15 15 O 1.21279 * 120.00552 * 174.33119 * 14 4 2 16 16 C 1.50699 * 119.99452 * 354.60741 * 14 4 2 17 17 H 1.09003 * 109.67580 * 324.32690 * 16 14 4 18 18 C 1.53344 * 109.67380 * 203.82978 * 16 14 4 19 19 C 1.52918 * 108.67910 * 172.73560 * 18 16 14 20 20 N 1.45749 * 110.48781 * 50.75210 * 19 18 16 21 21 C 1.33358 * 124.10453 * 340.90777 * 20 19 18 22 22 O 1.21285 * 118.24410 * 182.21744 * 21 20 19 23 23 C 1.50169 * 123.50779 * 2.26287 * 21 20 19 24 24 H 1.08998 * 109.46867 * 299.99777 * 1 2 3 25 25 H 1.09003 * 109.47019 * 59.99559 * 1 2 3 26 26 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46956 * 239.99820 * 2 1 3 28 28 H 1.09002 * 109.47435 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47316 * 300.00259 * 3 2 1 30 30 H 1.08998 * 109.46849 * 60.00212 * 3 2 1 31 31 H 1.09001 * 109.47410 * 29.99635 * 5 4 2 32 32 H 1.09001 * 109.47231 * 149.99796 * 5 4 2 33 33 H 0.97000 * 119.99905 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.60623 * 292.49455 * 18 16 14 35 35 H 1.09004 * 109.60092 * 52.97637 * 18 16 14 36 36 H 1.08995 * 109.30194 * 171.06650 * 19 18 16 37 37 H 1.08999 * 109.30058 * 290.44196 * 19 18 16 38 38 H 0.96998 * 117.95198 * 160.92682 * 20 19 18 39 39 H 1.09004 * 109.39398 * 222.26042 * 23 21 20 40 40 H 1.09000 * 109.41964 * 102.51628 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7743 -0.1193 2.5228 6 6 2.9136 0.7950 2.8932 7 1 3.7369 0.9366 2.2087 8 6 2.9045 1.4515 4.1057 9 7 3.8990 2.2490 4.4291 10 14 1.4802 1.2072 5.2894 11 1 1.7765 0.0653 6.1914 12 1 1.2904 2.4391 6.0964 13 1 0.2415 0.9227 4.5214 14 6 2.6921 -1.8518 1.0760 15 8 3.1852 -2.3709 2.0549 16 6 2.8380 -2.5018 -0.2757 17 1 1.9314 -2.3423 -0.8595 18 6 3.0820 -4.0057 -0.1017 19 6 3.0453 -4.6703 -1.4785 20 7 3.9214 -3.9679 -2.4075 21 6 4.3580 -2.7209 -2.2261 22 8 5.0513 -2.2244 -3.0885 23 6 4.0378 -1.8991 -1.0107 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 0.8434 0.4476 2.5087 32 1 1.6997 -0.9223 3.2561 33 1 3.8927 2.7106 5.2823 34 1 4.0577 -4.1674 0.3565 35 1 2.3032 -4.4317 0.5309 36 1 3.3727 -5.7059 -1.3874 37 1 2.0248 -4.6507 -1.8609 38 1 4.2046 -4.4367 -3.2081 39 1 3.8009 -0.8796 -1.3153 40 1 4.9007 -1.8854 -0.3449 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532109904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:09 Heat of formation + Delta-G solvation = -105.562362 kcal Electronic energy + Delta-G solvation = -21744.693808 eV Core-core repulsion = 18557.986690 eV Total energy + Delta-G solvation = -3186.707118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80801 -40.48506 -37.81258 -37.20425 -34.95362 -34.08716 -32.58807 -30.74728 -30.03274 -27.94627 -26.40287 -24.74344 -23.56840 -22.58621 -20.29099 -19.58271 -19.04763 -18.39009 -18.24627 -17.27408 -16.87694 -16.37002 -16.19732 -15.67230 -15.13141 -15.01164 -14.92690 -14.65095 -14.51627 -14.39746 -13.84336 -13.57087 -13.32792 -12.95700 -12.86789 -12.78894 -12.59826 -12.42212 -12.26829 -12.08490 -12.07194 -11.91180 -11.67549 -11.53098 -11.26810 -10.78451 -10.43637 -10.06363 -9.40397 -8.28828 -6.31376 1.32717 1.36348 1.44211 1.50899 1.71332 2.25430 2.31206 2.33033 3.05186 3.36369 3.63468 3.66544 3.72889 3.90272 4.13941 4.20458 4.26827 4.38459 4.41103 4.56166 4.72016 4.76439 4.83628 4.87813 4.92469 4.97225 4.99913 5.05056 5.09657 5.24363 5.42076 5.49506 5.57953 5.70460 5.84797 6.25553 6.29274 6.69501 6.73832 7.15963 7.26203 7.42502 8.88073 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.005644 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.468655 B = 4959.685892 C = 5077.675666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 C -0.151 4.151 4 N -0.592 5.592 5 C 0.226 3.774 6 C -0.517 4.517 7 H 0.030 0.970 8 C 0.008 3.992 9 N -0.949 5.949 10 Si 0.941 3.059 11 H -0.278 1.278 12 H -0.280 1.280 13 H -0.237 1.237 14 C 0.504 3.496 15 O -0.586 6.586 16 C -0.098 4.098 17 H 0.131 0.869 18 C -0.118 4.118 19 C 0.115 3.885 20 N -0.705 5.705 21 C 0.531 3.469 22 O -0.601 6.601 23 C -0.124 4.124 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.029 0.971 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.016 0.984 33 H 0.265 0.735 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.410 0.590 39 H 0.105 0.895 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.388 -13.075 -14.521 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 C -0.209 4.209 4 N -0.322 5.322 5 C 0.104 3.896 6 C -0.556 4.556 7 H 0.049 0.951 8 C -0.189 4.189 9 N -0.590 5.590 10 Si 0.765 3.235 11 H -0.203 1.203 12 H -0.205 1.205 13 H -0.160 1.160 14 C 0.292 3.708 15 O -0.466 6.466 16 C -0.119 4.119 17 H 0.149 0.851 18 C -0.156 4.156 19 C -0.007 4.007 20 N -0.356 5.356 21 C 0.318 3.682 22 O -0.484 6.484 23 C -0.164 4.164 24 H 0.065 0.935 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.049 0.951 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.247 0.753 39 H 0.123 0.877 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.838 -12.859 -14.107 21.475 hybrid contribution 0.427 0.452 1.064 1.233 sum -9.411 -12.407 -13.043 20.313 Atomic orbital electron populations 1.22162 0.93082 1.03104 1.03188 1.21460 0.95929 0.93456 0.87044 1.22057 1.00139 0.96289 1.02453 1.48170 1.54298 1.21694 1.08024 1.19248 0.95871 0.92852 0.81634 1.21514 1.06157 1.25293 1.02605 0.95138 1.25812 0.98856 0.94589 0.99670 1.70060 1.33889 1.31308 1.23696 0.85806 0.80670 0.77728 0.79309 1.20341 1.20502 1.15994 1.21087 0.77406 0.80928 0.91358 1.90658 1.48410 1.65516 1.42063 1.21471 1.00554 0.97239 0.92665 0.85122 1.21755 1.04138 0.91677 0.98075 1.21654 0.95458 0.96701 0.86924 1.45416 1.50093 1.13615 1.26473 1.19861 0.78636 0.82595 0.87065 1.90748 1.41214 1.71345 1.45061 1.21561 0.99300 1.00614 0.94954 0.93484 0.88785 0.91153 0.87354 0.95148 0.89317 0.93423 0.93388 0.96555 0.92584 0.92015 0.88296 0.87095 0.88192 0.75320 0.87666 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.27 71.98 0.67 -2.77 16 2 C 0.12 3.49 2.85 44.99 0.13 3.61 16 3 C -0.15 -4.94 8.34 71.98 0.60 -4.34 16 4 N -0.59 -22.49 2.38 -802.15 -1.91 -24.40 16 5 C 0.23 10.61 3.47 85.63 0.30 10.90 16 6 C -0.52 -29.72 8.40 25.60 0.22 -29.51 16 7 H 0.03 1.98 7.76 -2.91 -0.02 1.96 16 8 C 0.01 0.47 5.47 84.66 0.46 0.93 16 9 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 10 Si 0.94 44.16 27.47 68.60 1.88 46.04 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 14 C 0.50 18.76 6.76 87.66 0.59 19.35 16 15 O -0.59 -27.71 15.89 -3.03 -0.05 -27.76 16 16 C -0.10 -2.39 1.70 -11.40 -0.02 -2.41 16 17 H 0.13 2.28 6.76 -2.39 -0.02 2.27 16 18 C -0.12 -2.29 4.72 30.68 0.14 -2.14 16 19 C 0.12 1.24 7.17 86.49 0.62 1.86 16 20 N -0.70 -11.47 5.45 -467.33 -2.55 -14.02 16 21 C 0.53 13.54 7.71 87.71 0.68 14.22 16 22 O -0.60 -20.43 17.78 -3.05 -0.05 -20.49 16 23 C -0.12 -3.37 5.15 29.70 0.15 -3.21 16 24 H 0.05 1.21 6.91 -2.39 -0.02 1.19 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 2.42 4.53 -2.38 -0.01 2.40 16 28 H 0.03 1.14 7.95 -2.39 -0.02 1.12 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 1.84 6.93 -2.39 -0.02 1.82 16 31 H 0.05 2.09 5.77 -2.39 -0.01 2.08 16 32 H 0.02 0.83 6.94 -2.39 -0.02 0.81 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 35 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 38 H 0.41 5.34 8.80 -92.71 -0.82 4.52 16 39 H 0.11 2.87 6.96 -2.38 -0.02 2.85 16 40 H 0.08 2.74 8.09 -2.39 -0.02 2.72 16 Total: -1.00 -81.95 317.35 2.34 -79.61 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.17 Total: 14.44 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.54 Total: 6.50 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -4.16 Total: -98.35 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -0.10 Total: -48.24 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Total: -81.95 2.34 -79.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532109904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.952 kcal (2) G-P(sol) polarization free energy of solvation -81.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds