Wall clock time and date at job start Mon Mar 30 2020 00:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 C 1.50702 * 109.46743 * 240.00604 * 2 1 3 5 5 H 1.08002 * 119.99441 * 239.99284 * 4 2 1 6 6 C 1.37875 * 120.00641 * 60.00188 * 4 2 1 7 7 N 1.31514 * 119.99481 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00577 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47293 * 59.99047 * 8 6 4 10 10 H 1.48497 * 109.47533 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46772 * 299.99795 * 8 6 4 12 12 C 1.52999 * 109.47258 * 120.00260 * 2 1 3 13 13 N 1.46497 * 109.46992 * 300.00045 * 12 2 1 14 14 C 1.34777 * 119.99525 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 12 17 17 H 1.08996 * 112.85311 * 51.96883 * 16 14 13 18 18 C 1.53782 * 113.61471 * 280.77276 * 16 14 13 19 19 C 1.53783 * 87.08312 * 220.02004 * 18 16 14 20 20 C 1.53783 * 113.61207 * 183.27514 * 16 14 13 21 21 H 1.08998 * 113.61682 * 25.43571 * 20 16 14 22 22 C 1.50703 * 113.61540 * 254.52522 * 20 16 14 23 23 N 1.34771 * 119.99926 * 179.97438 * 22 20 16 24 24 O 1.21281 * 119.99820 * 0.02562 * 22 20 16 25 25 H 1.08998 * 109.46912 * 299.99187 * 1 2 3 26 26 H 1.08994 * 109.47328 * 60.00002 * 1 2 3 27 27 H 1.09007 * 109.46697 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47465 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47749 * 300.00235 * 3 2 1 30 30 H 1.09003 * 109.46864 * 60.00231 * 3 2 1 31 31 H 0.97000 * 120.00289 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.46838 * 179.97438 * 12 2 1 33 33 H 1.09001 * 109.46617 * 60.00267 * 12 2 1 34 34 H 0.97000 * 120.00580 * 0.02562 * 13 12 2 35 35 H 1.09003 * 113.61625 * 334.56921 * 18 16 14 36 36 H 1.09001 * 113.61604 * 105.38516 * 18 16 14 37 37 H 1.08999 * 113.61639 * 139.97700 * 19 18 16 38 38 H 1.09000 * 113.61505 * 270.88298 * 19 18 16 39 39 H 0.97000 * 120.00194 * 0.02562 * 23 22 20 40 40 H 0.96995 * 120.00113 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8259 -0.4202 -5.2206 11 1 3.8063 -1.1207 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4916 3.6694 15 8 2.5743 -1.4777 3.7806 16 6 1.3798 0.2223 4.8999 17 1 0.3017 0.3827 4.8897 18 6 2.1869 1.4840 5.2485 19 6 2.0588 1.0635 6.7221 20 6 1.9024 -0.3799 6.2149 21 1 2.8489 -0.9096 6.1068 22 6 0.8675 -1.1755 6.9679 23 7 1.1883 -1.7611 8.1386 24 8 -0.2537 -1.2896 6.5199 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 0.7082 1.1612 -3.4843 32 1 3.1300 -0.7217 1.2489 33 1 1.6768 -1.7490 1.2490 34 1 0.9938 0.7577 2.3565 35 1 3.2112 1.4639 4.8761 36 1 1.6687 2.4132 5.0115 37 1 2.9666 1.2261 7.3031 38 1 1.1663 1.4535 7.2115 39 1 2.0851 -1.6702 8.4967 40 1 0.5223 -2.2735 8.6230 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566464189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:26 Heat of formation + Delta-G solvation = -72.698345 kcal Electronic energy + Delta-G solvation = -20908.672991 eV Core-core repulsion = 17723.390964 eV Total energy + Delta-G solvation = -3185.282027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73629 -38.89670 -37.17222 -36.08467 -33.75629 -33.21040 -30.85047 -27.32547 -26.88826 -25.68965 -25.40541 -24.37385 -21.64172 -20.46943 -19.32277 -18.73131 -17.87804 -17.33606 -16.52455 -15.80182 -15.20711 -14.96101 -14.79593 -14.53409 -14.35992 -13.75396 -13.09036 -12.93397 -12.87746 -12.56883 -12.17399 -12.02920 -11.61353 -11.36183 -11.16839 -11.04891 -10.80999 -10.72479 -10.68733 -10.34857 -10.17865 -9.89965 -9.84053 -9.59795 -9.46682 -9.13845 -8.75919 -8.41441 -8.26365 -5.99405 -4.09514 2.52741 3.07334 3.31816 3.35583 3.36013 3.39908 3.84900 4.24078 4.38511 4.42431 4.57015 4.71919 5.06230 5.27120 5.34002 5.49586 5.54673 5.57045 5.72236 5.83214 6.19182 6.28678 6.36817 6.54897 6.61833 6.81900 6.86877 6.97801 7.05687 7.09116 7.16911 7.39186 7.59146 7.71903 8.04261 8.10775 8.15030 8.19885 8.41597 8.75937 8.91110 9.56055 11.01940 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038297 B = 0.003900 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.948107 B = 7178.122472 C = 7349.518829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.712 5.712 14 C 0.516 3.484 15 O -0.556 6.556 16 C -0.116 4.116 17 H 0.124 0.876 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.117 4.117 21 H 0.127 0.873 22 C 0.530 3.470 23 N -0.856 5.856 24 O -0.541 6.541 25 H 0.007 0.993 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.401 0.599 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 2.690 19.057 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.301 3.699 15 O -0.435 6.435 16 C -0.138 4.138 17 H 0.142 0.858 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.139 4.139 21 H 0.145 0.855 22 C 0.315 3.685 23 N -0.419 5.419 24 O -0.417 6.417 25 H 0.026 0.974 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.234 0.766 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.229 0.771 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.692 2.137 18.493 18.692 hybrid contribution 0.202 -0.426 -0.533 0.712 sum 1.894 1.711 17.959 18.140 Atomic orbital electron populations 1.21829 0.97725 0.99219 1.00090 1.18354 0.92830 0.92766 0.90558 1.21819 0.98487 0.98344 1.00088 1.20954 1.31506 1.12085 0.89943 0.92541 1.24875 0.94871 0.94929 0.98814 1.69796 1.36609 1.22764 1.23293 0.86634 0.79199 0.79817 0.82205 1.20298 1.21335 1.20300 1.21711 0.98025 0.95842 0.83562 1.46271 1.52336 1.31660 1.05935 1.20251 0.80483 0.84455 0.84703 1.90636 1.39181 1.26744 1.86986 1.22676 1.02605 0.96659 0.91838 0.85841 1.22812 1.01087 0.96825 0.95399 1.22814 1.02858 0.93076 0.97228 1.22683 0.99755 0.96029 0.95432 0.85512 1.20501 0.88890 0.78440 0.80692 1.43847 1.17256 1.56362 1.24460 1.90743 1.22586 1.60831 1.67521 0.97423 0.89619 0.95464 0.95510 0.89625 0.97454 0.92974 0.92793 0.92820 0.76644 0.89116 0.89892 0.90122 0.89446 0.77088 0.77093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 4 C -0.51 -13.46 8.01 -34.44 -0.28 -13.73 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.83 9.35 55.43 0.52 -23.31 16 8 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.13 2.86 4.50 -4.04 -0.02 2.85 16 13 N -0.71 -13.11 4.96 -60.30 -0.30 -13.40 16 14 C 0.52 9.19 7.35 -10.98 -0.08 9.11 16 15 O -0.56 -11.75 15.92 5.55 0.09 -11.66 16 16 C -0.12 -1.55 3.47 -90.96 -0.32 -1.87 16 17 H 0.12 1.69 7.44 -51.93 -0.39 1.31 16 18 C -0.12 -1.22 7.63 -25.92 -0.20 -1.42 16 19 C -0.12 -0.99 7.63 -25.91 -0.20 -1.19 16 20 C -0.12 -1.33 3.45 -90.95 -0.31 -1.64 16 21 H 0.13 1.47 7.47 -51.93 -0.39 1.08 16 22 C 0.53 6.57 7.63 -10.99 -0.08 6.48 16 23 N -0.86 -6.69 8.87 31.22 0.28 -6.41 16 24 O -0.54 -9.14 16.74 5.56 0.09 -9.05 16 25 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 26 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.40 6.67 6.16 -40.82 -0.25 6.41 16 35 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.40 1.88 8.83 -40.82 -0.36 1.52 16 40 H 0.40 2.71 8.93 -40.82 -0.36 2.34 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -32.30 323.98 -6.53 -38.83 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.01 Total: 8.10 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.05 Total: -3.88 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.50 Total: -43.12 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.18 Total: -20.71 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.30 -6.53 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566464189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.867 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds