Wall clock time and date at job start Mon Mar 30 2020 00:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 C 1.50702 * 109.46743 * 240.00604 * 2 1 3 5 5 H 1.08002 * 119.99441 * 239.99284 * 4 2 1 6 6 C 1.37875 * 120.00641 * 60.00188 * 4 2 1 7 7 N 1.31514 * 119.99481 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00577 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47293 * 59.99047 * 8 6 4 10 10 H 1.48497 * 109.47533 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46772 * 299.99795 * 8 6 4 12 12 C 1.52999 * 109.47258 * 120.00260 * 2 1 3 13 13 N 1.46497 * 109.46992 * 300.00045 * 12 2 1 14 14 C 1.34777 * 119.99525 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 12 17 17 H 1.08996 * 112.85311 * 51.96883 * 16 14 13 18 18 C 1.53782 * 113.61471 * 280.77276 * 16 14 13 19 19 C 1.53783 * 87.08312 * 220.02004 * 18 16 14 20 20 C 1.53783 * 113.61207 * 183.27514 * 16 14 13 21 21 H 1.08998 * 113.61682 * 25.43571 * 20 16 14 22 22 C 1.50703 * 113.61540 * 254.52522 * 20 16 14 23 23 N 1.34771 * 119.99926 * 179.97438 * 22 20 16 24 24 O 1.21281 * 119.99820 * 0.02562 * 22 20 16 25 25 H 1.08998 * 109.46912 * 299.99187 * 1 2 3 26 26 H 1.08994 * 109.47328 * 60.00002 * 1 2 3 27 27 H 1.09007 * 109.46697 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47465 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47749 * 300.00235 * 3 2 1 30 30 H 1.09003 * 109.46864 * 60.00231 * 3 2 1 31 31 H 0.97000 * 120.00289 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.46838 * 179.97438 * 12 2 1 33 33 H 1.09001 * 109.46617 * 60.00267 * 12 2 1 34 34 H 0.97000 * 120.00580 * 0.02562 * 13 12 2 35 35 H 1.09003 * 113.61625 * 334.56921 * 18 16 14 36 36 H 1.09001 * 113.61604 * 105.38516 * 18 16 14 37 37 H 1.08999 * 113.61639 * 139.97700 * 19 18 16 38 38 H 1.09000 * 113.61505 * 270.88298 * 19 18 16 39 39 H 0.97000 * 120.00194 * 0.02562 * 23 22 20 40 40 H 0.96995 * 120.00113 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8259 -0.4202 -5.2206 11 1 3.8063 -1.1207 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4916 3.6694 15 8 2.5743 -1.4777 3.7806 16 6 1.3798 0.2223 4.8999 17 1 0.3017 0.3827 4.8897 18 6 2.1869 1.4840 5.2485 19 6 2.0588 1.0635 6.7221 20 6 1.9024 -0.3799 6.2149 21 1 2.8489 -0.9096 6.1068 22 6 0.8675 -1.1755 6.9679 23 7 1.1883 -1.7611 8.1386 24 8 -0.2537 -1.2896 6.5199 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 0.7082 1.1612 -3.4843 32 1 3.1300 -0.7217 1.2489 33 1 1.6768 -1.7490 1.2490 34 1 0.9938 0.7577 2.3565 35 1 3.2112 1.4639 4.8761 36 1 1.6687 2.4132 5.0115 37 1 2.9666 1.2261 7.3031 38 1 1.1663 1.4535 7.2115 39 1 2.0851 -1.6702 8.4967 40 1 0.5223 -2.2735 8.6230 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566464189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:26 Heat of formation + Delta-G solvation = -96.847415 kcal Electronic energy + Delta-G solvation = -20909.720174 eV Core-core repulsion = 17723.390964 eV Total energy + Delta-G solvation = -3186.329210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79380 -40.19845 -38.45832 -37.62490 -34.98319 -34.60398 -32.72981 -28.58140 -27.74130 -27.56820 -27.33395 -25.95530 -22.53924 -21.75036 -20.64032 -20.24568 -18.92740 -18.38345 -17.80405 -17.43752 -16.69420 -16.57408 -16.24975 -15.68498 -15.50489 -15.12381 -14.80542 -14.52444 -14.04316 -13.89235 -13.71818 -13.22677 -13.08565 -12.94697 -12.67382 -12.63295 -12.49718 -12.26013 -12.13711 -12.02860 -11.48988 -11.47258 -11.27391 -10.86277 -10.76184 -10.66219 -10.58504 -10.39833 -9.93318 -8.02238 -6.18374 1.43899 1.44893 1.51716 1.60065 1.68299 2.30066 2.48491 2.71344 3.21030 3.31671 3.55697 3.74848 3.83839 4.12335 4.33069 4.46018 4.49962 4.68763 4.70520 4.72124 4.89505 4.98294 5.03251 5.05486 5.06097 5.11788 5.19009 5.36198 5.41082 5.60238 5.66111 5.66965 5.90663 6.13973 6.21229 6.43052 6.46155 6.68395 6.85337 7.32139 7.35693 7.49192 8.96542 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038297 B = 0.003900 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.948107 B = 7178.122472 C = 7349.518829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.118 4.118 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.275 1.275 12 C 0.147 3.853 13 N -0.708 5.708 14 C 0.512 3.488 15 O -0.593 6.593 16 C -0.124 4.124 17 H 0.121 0.879 18 C -0.116 4.116 19 C -0.099 4.099 20 C -0.120 4.120 21 H 0.124 0.876 22 C 0.524 3.476 23 N -0.833 5.833 24 O -0.595 6.595 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.013 0.987 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.261 0.739 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.408 0.592 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.419 0.581 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 3.840 20.887 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.359 5.359 14 C 0.300 3.700 15 O -0.475 6.475 16 C -0.146 4.146 17 H 0.139 0.861 18 C -0.154 4.154 19 C -0.137 4.137 20 C -0.142 4.142 21 H 0.142 0.858 22 C 0.310 3.690 23 N -0.396 5.396 24 O -0.475 6.475 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.250 0.750 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.225 3.299 20.377 20.762 hybrid contribution 0.060 -0.836 -1.053 1.346 sum 2.285 2.463 19.324 19.614 Atomic orbital electron populations 1.21680 0.97406 0.98427 1.00359 1.18360 0.93028 0.93319 0.90283 1.21643 0.97983 0.97522 1.00452 1.21247 1.31881 1.12218 0.91644 0.93832 1.25457 0.95108 0.95597 1.00964 1.69900 1.36843 1.23279 1.23699 0.85809 0.78705 0.78719 0.79527 1.20453 1.20700 1.20072 1.21262 0.97079 0.94826 0.84515 1.46136 1.52557 1.31834 1.05343 1.21109 0.79443 0.83928 0.85491 1.90611 1.40893 1.28441 1.87551 1.22808 1.02836 0.98737 0.90172 0.86108 1.22858 1.00380 0.95681 0.96442 1.22788 1.04786 0.89660 0.96433 1.22756 0.98923 0.97960 0.94526 0.85776 1.20748 0.88287 0.78474 0.81525 1.43659 1.18390 1.54641 1.22949 1.90722 1.24664 1.63013 1.69130 0.94626 0.91731 0.96731 0.96107 0.91896 0.94317 0.92982 0.94045 0.95064 0.75477 0.89325 0.88042 0.87030 0.88430 0.74986 0.76245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.08 71.98 0.58 -5.03 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -28.71 8.01 25.60 0.21 -28.51 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.53 5.15 84.65 0.44 1.96 16 7 N -0.90 -48.49 9.35 21.45 0.20 -48.29 16 8 Si 0.95 43.13 29.54 68.60 2.03 45.15 16 9 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 C 0.15 6.52 4.50 86.38 0.39 6.91 16 13 N -0.71 -25.71 4.96 -463.07 -2.30 -28.00 16 14 C 0.51 18.06 7.35 87.66 0.64 18.71 16 15 O -0.59 -25.30 15.92 -3.04 -0.05 -25.35 16 16 C -0.12 -3.13 3.47 -11.01 -0.04 -3.17 16 17 H 0.12 3.18 7.44 -2.39 -0.02 3.16 16 18 C -0.12 -1.94 7.63 31.12 0.24 -1.70 16 19 C -0.10 -1.23 7.63 31.12 0.24 -1.00 16 20 C -0.12 -2.48 3.45 -11.01 -0.04 -2.52 16 21 H 0.12 2.67 7.47 -2.39 -0.02 2.65 16 22 C 0.52 12.26 7.63 87.66 0.67 12.92 16 23 N -0.83 -11.23 8.87 -173.54 -1.54 -12.77 16 24 O -0.59 -19.93 16.74 -3.03 -0.05 -19.98 16 25 H 0.03 1.40 6.86 -2.39 -0.02 1.38 16 26 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 27 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 30 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 31 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.41 13.05 6.16 -92.71 -0.57 12.48 16 35 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 1.09 8.09 -2.39 -0.02 1.07 16 39 H 0.42 2.72 8.83 -92.71 -0.82 1.90 16 40 H 0.41 4.73 8.93 -92.71 -0.83 3.91 16 Total: -1.00 -71.40 323.98 1.03 -70.37 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -1.14 Total: 22.60 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 3.88 Total: -3.73 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -3.64 Total: -89.07 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.10 Total: -45.33 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -71.40 1.03 -70.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566464189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.476 kcal (2) G-P(sol) polarization free energy of solvation -71.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds