Wall clock time and date at job start Mon Mar 30 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 N 1.46502 * 109.47566 * 119.99944 * 2 1 3 5 5 C 1.46501 * 119.99765 * 115.42202 * 4 2 1 6 6 C 1.50692 * 109.46911 * 90.00509 * 5 4 2 7 7 H 1.08009 * 120.00191 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99959 * 179.97438 * 6 5 4 9 9 N 1.31522 * 120.00193 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00163 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47394 * 270.00154 * 10 8 6 12 12 H 1.48504 * 109.46827 * 30.00181 * 10 8 6 13 13 H 1.48496 * 109.47254 * 149.99668 * 10 8 6 14 14 C 1.34774 * 119.99866 * 295.43161 * 4 2 1 15 15 O 1.21283 * 119.99895 * 5.51423 * 14 4 2 16 16 C 1.50696 * 120.00067 * 185.51904 * 14 4 2 17 17 H 1.09001 * 109.29733 * 325.96209 * 16 14 4 18 18 C 1.52923 * 109.30040 * 85.53925 * 16 14 4 19 19 C 1.53348 * 108.67438 * 171.06781 * 18 16 14 20 20 C 1.53066 * 108.42431 * 292.46764 * 19 18 16 21 21 C 1.50175 * 109.88960 * 48.90099 * 20 19 18 22 22 O 1.21284 * 118.24687 * 162.39647 * 21 20 19 23 23 N 1.33354 * 123.51234 * 342.41801 * 21 20 19 24 24 H 1.08993 * 109.47380 * 305.09313 * 1 2 3 25 25 H 1.08998 * 109.47146 * 65.09368 * 1 2 3 26 26 H 1.09004 * 109.46901 * 185.09541 * 1 2 3 27 27 H 1.09001 * 109.47346 * 240.00100 * 2 1 3 28 28 H 1.09007 * 109.47320 * 174.77450 * 3 2 1 29 29 H 1.08996 * 109.47291 * 294.77355 * 3 2 1 30 30 H 1.09005 * 109.47368 * 54.77577 * 3 2 1 31 31 H 1.09000 * 109.47316 * 330.00127 * 5 4 2 32 32 H 1.09006 * 109.46754 * 210.00150 * 5 4 2 33 33 H 0.97000 * 120.00146 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.60317 * 290.82500 * 18 16 14 35 35 H 1.08999 * 109.60721 * 51.30755 * 18 16 14 36 36 H 1.09003 * 109.67156 * 52.20525 * 19 18 16 37 37 H 1.09001 * 109.67466 * 172.69840 * 19 18 16 38 38 H 1.09000 * 109.40378 * 169.02741 * 20 19 18 39 39 H 1.09001 * 109.40487 * 288.77251 * 20 19 18 40 40 H 0.96999 * 117.94931 * 182.22825 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.7761 -1.9375 1.0640 6 6 4.2456 -1.6228 0.9532 7 1 4.5816 -0.5966 0.9783 8 6 5.1613 -2.6449 0.8199 9 7 6.4440 -2.3704 0.7237 10 14 4.5804 -4.4198 0.7772 11 1 4.5476 -4.9633 2.1587 12 1 3.2183 -4.4807 0.1888 13 1 5.5134 -5.2262 -0.0501 14 6 1.7705 -0.1789 2.4181 15 8 1.0595 0.7968 2.5341 16 6 2.3768 -0.8190 3.6402 17 1 2.4400 -1.8966 3.4886 18 6 3.7816 -0.2565 3.8612 19 6 4.2968 -0.7426 5.2213 20 6 3.4572 -0.0854 6.3196 21 6 1.9964 -0.2393 6.0070 22 8 1.1970 -0.0745 6.9040 23 7 1.5311 -0.5479 4.7959 24 1 -0.3634 0.5908 0.8408 25 1 -0.3633 0.4328 -0.9321 26 1 -0.3633 -1.0236 0.0913 27 1 1.8933 -0.5138 -0.8900 28 1 3.1260 1.4440 0.0936 29 1 1.7550 1.9286 -0.9330 30 1 1.6022 1.9827 0.8395 31 1 2.4496 -2.4680 0.1695 32 1 2.6033 -2.5622 1.9404 33 1 7.0882 -3.0895 0.6295 34 1 4.4451 -0.6092 3.0715 35 1 3.7450 0.8328 3.8520 36 1 4.2001 -1.8265 5.2843 37 1 5.3428 -0.4600 5.3398 38 1 3.6749 -0.5616 7.2756 39 1 3.7049 0.9743 6.3796 40 1 0.5696 -0.5947 4.6766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574221059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:35 Heat of formation + Delta-G solvation = -80.918705 kcal Electronic energy + Delta-G solvation = -22065.517679 eV Core-core repulsion = 18879.879190 eV Total energy + Delta-G solvation = -3185.638489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49575 -39.10979 -36.18063 -35.50666 -33.27060 -32.72200 -31.86432 -29.30593 -27.74414 -26.76659 -25.00441 -22.68645 -22.50991 -21.65229 -18.86751 -18.60469 -17.15981 -16.97129 -16.39544 -16.05891 -15.20022 -14.95309 -14.65001 -14.06595 -13.84082 -13.66791 -13.37924 -13.22597 -13.13911 -12.72759 -12.62500 -12.24982 -11.82852 -11.66840 -11.60293 -11.21932 -11.07654 -10.95299 -10.80794 -10.74483 -10.60156 -10.47484 -10.35654 -9.70783 -9.68452 -9.20522 -8.86190 -8.56073 -7.91001 -6.34945 -4.37143 2.85497 3.01832 3.07929 3.16239 3.19350 3.38899 3.84095 4.14933 4.80450 4.85568 4.95326 5.05055 5.09938 5.24196 5.45209 5.52176 5.55156 5.66177 5.69519 5.93474 5.97005 5.97305 6.04433 6.16483 6.20863 6.34322 6.36084 6.43598 6.52155 6.59621 6.72930 6.74942 6.97915 7.23174 7.30582 7.58346 7.96330 8.25676 8.43642 8.66796 8.74596 9.23839 10.76436 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.008880 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.422437 B = 3152.431259 C = 4423.038323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 C -0.165 4.165 4 N -0.581 5.581 5 C 0.202 3.798 6 C -0.543 4.543 7 H 0.084 0.916 8 C 0.080 3.920 9 N -0.885 5.885 10 Si 0.866 3.134 11 H -0.272 1.272 12 H -0.265 1.265 13 H -0.283 1.283 14 C 0.510 3.490 15 O -0.553 6.553 16 C 0.127 3.873 17 H 0.100 0.900 18 C -0.133 4.133 19 C -0.119 4.119 20 C -0.136 4.136 21 C 0.525 3.475 22 O -0.571 6.571 23 N -0.698 5.698 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.268 0.732 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 0.926 2.070 5.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 C -0.223 4.223 4 N -0.312 5.312 5 C 0.081 3.919 6 C -0.581 4.581 7 H 0.102 0.898 8 C -0.124 4.124 9 N -0.521 5.521 10 Si 0.693 3.307 11 H -0.197 1.197 12 H -0.189 1.189 13 H -0.208 1.208 14 C 0.297 3.703 15 O -0.433 6.433 16 C 0.019 3.981 17 H 0.118 0.882 18 C -0.171 4.171 19 C -0.156 4.156 20 C -0.176 4.176 21 C 0.313 3.687 22 O -0.451 6.451 23 N -0.349 5.349 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.094 1.426 2.564 5.878 hybrid contribution -0.336 -1.161 -0.392 1.271 sum -5.430 0.264 2.172 5.854 Atomic orbital electron populations 1.22210 0.95884 1.01811 1.02438 1.20893 0.93270 0.93511 0.87812 1.22153 1.01894 0.96123 1.02122 1.48040 1.53054 1.25552 1.04509 1.19968 0.92714 0.81684 0.97531 1.21325 0.88474 0.95944 1.52369 0.89835 1.24854 0.94712 0.98756 0.94094 1.69875 1.00974 1.33048 1.48242 0.86999 0.79352 0.85432 0.78935 1.19743 1.18924 1.20846 1.20467 0.80795 0.84173 0.84872 1.90593 1.38941 1.27329 1.86449 1.21019 0.92055 1.01147 0.83928 0.88238 1.22050 0.93909 1.01011 1.00115 1.21631 0.99837 1.00926 0.93235 1.21692 0.91097 1.03763 1.01043 1.20157 0.91784 0.75073 0.81689 1.90715 1.57793 1.52115 1.44504 1.45339 1.10683 1.70051 1.08810 0.90909 0.92493 0.93144 0.89551 0.92127 0.92764 0.90865 0.94562 0.95225 0.92207 0.85162 0.91444 0.90959 0.90097 0.88510 0.88422 0.76631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.11 37.16 0.34 -2.11 16 2 C 0.15 2.47 3.27 -67.93 -0.22 2.25 16 3 C -0.17 -2.70 8.95 37.16 0.33 -2.37 16 4 N -0.58 -10.60 2.41 -167.47 -0.40 -11.01 16 5 C 0.20 3.96 3.94 -5.20 -0.02 3.94 16 6 C -0.54 -12.47 7.89 -34.44 -0.27 -12.74 16 7 H 0.08 2.14 7.65 -52.48 -0.40 1.74 16 8 C 0.08 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.88 -23.35 13.96 55.43 0.77 -22.57 16 10 Si 0.87 18.17 27.47 -169.99 -4.67 13.50 16 11 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 12 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 C 0.51 9.34 6.17 -10.99 -0.07 9.27 16 15 O -0.55 -11.02 12.91 5.55 0.07 -10.94 16 16 C 0.13 2.10 2.87 -69.53 -0.20 1.90 16 17 H 0.10 1.63 5.94 -51.93 -0.31 1.32 16 18 C -0.13 -2.15 5.26 -26.59 -0.14 -2.29 16 19 C -0.12 -1.60 6.03 -26.52 -0.16 -1.76 16 20 C -0.14 -1.82 6.03 -28.10 -0.17 -1.99 16 21 C 0.53 8.79 7.71 -11.87 -0.09 8.70 16 22 O -0.57 -11.37 17.78 5.55 0.10 -11.28 16 23 N -0.70 -11.40 4.80 -55.99 -0.27 -11.67 16 24 H 0.07 1.20 6.47 -51.93 -0.34 0.86 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.41 7.83 -51.93 -0.41 1.00 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.30 6.21 -51.93 -0.32 0.98 16 31 H 0.04 0.72 7.02 -51.93 -0.36 0.35 16 32 H 0.03 0.56 5.36 -51.93 -0.28 0.28 16 33 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.13 2.45 5.43 -51.93 -0.28 2.17 16 35 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.40 6.49 8.56 -40.82 -0.35 6.14 16 LS Contribution 314.79 15.07 4.74 4.74 Total: -1.00 -27.86 314.79 -6.44 -34.30 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.02 Total: 10.26 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.77 Total: 4.66 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.10 Total: -45.25 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.22 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -4.67 Total: 13.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.86 -6.44 -34.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574221059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.622 kcal (2) G-P(sol) polarization free energy of solvation -27.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds