Wall clock time and date at job start Mon Mar 30 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 N 1.46502 * 109.47566 * 119.99944 * 2 1 3 5 5 C 1.46501 * 119.99765 * 115.42202 * 4 2 1 6 6 C 1.50692 * 109.46911 * 90.00509 * 5 4 2 7 7 H 1.08009 * 120.00191 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99959 * 179.97438 * 6 5 4 9 9 N 1.31522 * 120.00193 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00163 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47394 * 270.00154 * 10 8 6 12 12 H 1.48504 * 109.46827 * 30.00181 * 10 8 6 13 13 H 1.48496 * 109.47254 * 149.99668 * 10 8 6 14 14 C 1.34774 * 119.99866 * 295.43161 * 4 2 1 15 15 O 1.21283 * 119.99895 * 5.51423 * 14 4 2 16 16 C 1.50696 * 120.00067 * 185.51904 * 14 4 2 17 17 H 1.09001 * 109.29733 * 325.96209 * 16 14 4 18 18 C 1.52923 * 109.30040 * 85.53925 * 16 14 4 19 19 C 1.53348 * 108.67438 * 171.06781 * 18 16 14 20 20 C 1.53066 * 108.42431 * 292.46764 * 19 18 16 21 21 C 1.50175 * 109.88960 * 48.90099 * 20 19 18 22 22 O 1.21284 * 118.24687 * 162.39647 * 21 20 19 23 23 N 1.33354 * 123.51234 * 342.41801 * 21 20 19 24 24 H 1.08993 * 109.47380 * 305.09313 * 1 2 3 25 25 H 1.08998 * 109.47146 * 65.09368 * 1 2 3 26 26 H 1.09004 * 109.46901 * 185.09541 * 1 2 3 27 27 H 1.09001 * 109.47346 * 240.00100 * 2 1 3 28 28 H 1.09007 * 109.47320 * 174.77450 * 3 2 1 29 29 H 1.08996 * 109.47291 * 294.77355 * 3 2 1 30 30 H 1.09005 * 109.47368 * 54.77577 * 3 2 1 31 31 H 1.09000 * 109.47316 * 330.00127 * 5 4 2 32 32 H 1.09006 * 109.46754 * 210.00150 * 5 4 2 33 33 H 0.97000 * 120.00146 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.60317 * 290.82500 * 18 16 14 35 35 H 1.08999 * 109.60721 * 51.30755 * 18 16 14 36 36 H 1.09003 * 109.67156 * 52.20525 * 19 18 16 37 37 H 1.09001 * 109.67466 * 172.69840 * 19 18 16 38 38 H 1.09000 * 109.40378 * 169.02741 * 20 19 18 39 39 H 1.09001 * 109.40487 * 288.77251 * 20 19 18 40 40 H 0.96999 * 117.94931 * 182.22825 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.7761 -1.9375 1.0640 6 6 4.2456 -1.6228 0.9532 7 1 4.5816 -0.5966 0.9783 8 6 5.1613 -2.6449 0.8199 9 7 6.4440 -2.3704 0.7237 10 14 4.5804 -4.4198 0.7772 11 1 4.5476 -4.9633 2.1587 12 1 3.2183 -4.4807 0.1888 13 1 5.5134 -5.2262 -0.0501 14 6 1.7705 -0.1789 2.4181 15 8 1.0595 0.7968 2.5341 16 6 2.3768 -0.8190 3.6402 17 1 2.4400 -1.8966 3.4886 18 6 3.7816 -0.2565 3.8612 19 6 4.2968 -0.7426 5.2213 20 6 3.4572 -0.0854 6.3196 21 6 1.9964 -0.2393 6.0070 22 8 1.1970 -0.0745 6.9040 23 7 1.5311 -0.5479 4.7959 24 1 -0.3634 0.5908 0.8408 25 1 -0.3633 0.4328 -0.9321 26 1 -0.3633 -1.0236 0.0913 27 1 1.8933 -0.5138 -0.8900 28 1 3.1260 1.4440 0.0936 29 1 1.7550 1.9286 -0.9330 30 1 1.6022 1.9827 0.8395 31 1 2.4496 -2.4680 0.1695 32 1 2.6033 -2.5622 1.9404 33 1 7.0882 -3.0895 0.6295 34 1 4.4451 -0.6092 3.0715 35 1 3.7450 0.8328 3.8520 36 1 4.2001 -1.8265 5.2843 37 1 5.3428 -0.4600 5.3398 38 1 3.6749 -0.5616 7.2756 39 1 3.7049 0.9743 6.3796 40 1 0.5696 -0.5947 4.6766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574221059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:35 Heat of formation + Delta-G solvation = -98.952817 kcal Electronic energy + Delta-G solvation = -22066.299697 eV Core-core repulsion = 18879.879190 eV Total energy + Delta-G solvation = -3186.420507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88402 -40.51893 -37.56105 -37.00379 -34.91455 -33.98967 -33.42034 -30.65260 -29.42444 -28.03690 -26.28757 -24.37148 -23.78314 -23.04107 -20.13431 -20.03347 -18.94803 -18.38861 -17.87466 -17.42003 -16.59706 -16.29688 -16.18708 -15.59972 -15.18411 -14.99991 -14.76683 -14.52970 -14.47653 -14.31885 -14.04485 -13.74979 -13.29428 -12.96860 -12.88356 -12.64749 -12.58130 -12.44997 -12.17920 -11.96046 -11.94184 -11.88199 -11.84950 -11.47535 -11.07893 -10.69811 -10.59313 -9.98331 -9.43338 -8.21439 -6.26505 1.44041 1.48816 1.52379 1.54482 1.57535 2.01209 2.39985 2.48088 3.12058 3.44606 3.60444 3.79195 3.89384 4.00976 4.14548 4.25395 4.26145 4.39071 4.52840 4.64759 4.74384 4.78843 4.86316 4.90472 4.93524 4.97018 5.02204 5.05937 5.23951 5.29890 5.34340 5.39636 5.50470 5.65226 5.80858 6.23743 6.27254 6.61907 6.79191 7.09585 7.24784 7.38902 8.92970 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.008880 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.422437 B = 3152.431259 C = 4423.038323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 C -0.156 4.156 4 N -0.583 5.583 5 C 0.206 3.794 6 C -0.527 4.527 7 H 0.046 0.954 8 C 0.031 3.969 9 N -0.934 5.934 10 Si 0.923 3.077 11 H -0.262 1.262 12 H -0.243 1.243 13 H -0.293 1.293 14 C 0.508 3.492 15 O -0.571 6.571 16 C 0.131 3.869 17 H 0.108 0.892 18 C -0.128 4.128 19 C -0.111 4.111 20 C -0.128 4.128 21 C 0.521 3.479 22 O -0.605 6.605 23 N -0.695 5.695 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.266 0.734 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 -0.122 2.202 6.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 C -0.214 4.214 4 N -0.313 5.313 5 C 0.085 3.915 6 C -0.565 4.565 7 H 0.064 0.936 8 C -0.169 4.169 9 N -0.573 5.573 10 Si 0.747 3.253 11 H -0.187 1.187 12 H -0.167 1.167 13 H -0.220 1.220 14 C 0.295 3.705 15 O -0.451 6.451 16 C 0.023 3.977 17 H 0.125 0.875 18 C -0.166 4.166 19 C -0.149 4.149 20 C -0.167 4.167 21 C 0.310 3.690 22 O -0.488 6.488 23 N -0.344 5.344 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.095 0.384 2.681 6.669 hybrid contribution -0.031 -0.722 -0.482 0.869 sum -6.126 -0.339 2.199 6.518 Atomic orbital electron populations 1.22096 0.94030 1.02046 1.03008 1.21138 0.94747 0.93283 0.87348 1.22062 1.00117 0.96351 1.02883 1.48087 1.52755 1.25338 1.05167 1.19862 0.90574 0.82523 0.98576 1.21374 0.90343 0.94101 1.50712 0.93585 1.25553 0.94533 1.02769 0.94026 1.70019 1.02410 1.34190 1.50687 0.86080 0.79546 0.80342 0.79312 1.18666 1.16683 1.21952 1.20748 0.80465 0.83965 0.85348 1.90589 1.39748 1.28072 1.86736 1.20990 0.92047 1.01305 0.83329 0.87504 1.21921 0.93185 1.00496 1.01025 1.21606 1.00660 1.01189 0.91406 1.21716 0.88378 1.04861 1.01782 1.20772 0.93013 0.74085 0.81106 1.90701 1.58978 1.53726 1.45390 1.45343 1.10658 1.69675 1.08749 0.92737 0.89928 0.92577 0.89033 0.94434 0.90045 0.92450 0.93577 0.93539 0.92455 0.87860 0.92186 0.90427 0.88449 0.86284 0.87094 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.11 71.98 0.66 -3.57 16 2 C 0.14 4.40 3.27 44.99 0.15 4.55 16 3 C -0.16 -5.04 8.95 71.98 0.64 -4.40 16 4 N -0.58 -20.74 2.41 -802.15 -1.93 -22.67 16 5 C 0.21 7.76 3.94 85.63 0.34 8.09 16 6 C -0.53 -24.18 7.89 25.60 0.20 -23.98 16 7 H 0.05 2.44 7.65 -2.91 -0.02 2.41 16 8 C 0.03 1.50 5.47 84.65 0.46 1.96 16 9 N -0.93 -50.15 13.96 21.45 0.30 -49.85 16 10 Si 0.92 36.20 27.47 68.60 1.88 38.09 16 11 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 12 H -0.24 -8.65 6.54 99.48 0.65 -8.00 16 13 H -0.29 -11.98 7.11 99.48 0.71 -11.28 16 14 C 0.51 18.29 6.17 87.66 0.54 18.83 16 15 O -0.57 -22.57 12.91 -3.04 -0.04 -22.61 16 16 C 0.13 4.24 2.87 44.36 0.13 4.36 16 17 H 0.11 3.30 5.94 -2.39 -0.01 3.29 16 18 C -0.13 -4.09 5.26 30.69 0.16 -3.93 16 19 C -0.11 -2.79 6.03 30.73 0.19 -2.61 16 20 C -0.13 -3.12 6.03 29.71 0.18 -2.95 16 21 C 0.52 16.74 7.71 87.71 0.68 17.41 16 22 O -0.61 -23.54 17.78 -3.04 -0.05 -23.59 16 23 N -0.69 -21.99 4.80 -450.23 -2.16 -24.15 16 24 H 0.05 1.71 6.47 -2.39 -0.02 1.70 16 25 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 2.83 7.83 -2.39 -0.02 2.81 16 28 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 2.03 6.21 -2.38 -0.01 2.02 16 31 H 0.05 1.68 7.02 -2.39 -0.02 1.67 16 32 H 0.05 1.63 5.36 -2.38 -0.01 1.61 16 33 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 34 H 0.10 3.94 5.43 -2.38 -0.01 3.92 16 35 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.40 12.66 8.56 -92.71 -0.79 11.87 16 Total: -1.00 -60.22 314.79 2.52 -57.70 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.20 Total: 33.31 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 4.32 Total: 13.78 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -3.79 Total: -96.67 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -0.09 Total: -46.20 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 1.88 Total: 38.09 kcal Total: -60.22 2.52 -57.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574221059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.256 kcal (2) G-P(sol) polarization free energy of solvation -60.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds