Wall clock time and date at job start Mon Mar 30 2020 01:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47069 * 2 1 4 4 N 1.46496 * 109.46745 * 119.99780 * 2 1 3 5 5 C 1.46491 * 120.00453 * 299.99749 * 4 2 1 6 6 C 1.50702 * 109.46957 * 90.00133 * 5 4 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.34780 * 119.99526 * 120.00252 * 4 2 1 15 15 O 1.21285 * 119.99673 * 179.97438 * 14 4 2 16 16 C 1.50700 * 120.00400 * 359.97438 * 14 4 2 17 17 H 1.08999 * 110.43413 * 300.70912 * 16 14 4 18 18 C 1.54621 * 110.48954 * 178.16037 * 16 14 4 19 19 C 1.54478 * 101.76783 * 216.52702 * 18 16 14 20 20 N 1.46762 * 105.47473 * 25.41492 * 19 18 16 21 21 C 1.46499 * 124.35366 * 162.98281 * 20 19 18 22 22 C 1.34659 * 111.33683 * 342.87236 * 20 19 18 23 23 O 1.21282 * 125.07650 * 180.51811 * 22 20 19 24 24 H 1.08996 * 109.46993 * 300.00218 * 1 2 3 25 25 H 1.08997 * 109.47185 * 60.00198 * 1 2 3 26 26 H 1.08997 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46618 * 239.99633 * 2 1 3 28 28 H 1.08999 * 109.47175 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47090 * 300.00182 * 3 2 1 30 30 H 1.08996 * 109.47391 * 60.00025 * 3 2 1 31 31 H 1.09004 * 109.47166 * 330.00399 * 5 4 2 32 32 H 1.08994 * 109.47507 * 210.00106 * 5 4 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 34 34 H 1.09005 * 110.97274 * 334.64546 * 18 16 14 35 35 H 1.09001 * 110.97367 * 98.37233 * 18 16 14 36 36 H 1.09000 * 110.24750 * 144.41756 * 19 18 16 37 37 H 1.08997 * 110.24917 * 266.32923 * 19 18 16 38 38 H 1.08999 * 109.46740 * 90.00253 * 21 20 19 39 39 H 1.08999 * 109.47131 * 210.00117 * 21 20 19 40 40 H 1.09002 * 109.47040 * 330.00543 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 0.3830 -0.8387 2.9829 7 1 -0.1176 -1.5527 2.3457 8 6 -0.1472 -0.5253 4.2166 9 7 0.4625 0.3438 4.9927 10 14 -1.7315 -1.3351 4.7853 11 1 -1.5434 -2.8072 4.8392 12 1 -2.0877 -0.8314 6.1361 13 1 -2.8233 -1.0102 3.8326 14 6 2.7932 -1.7864 1.0725 15 8 3.1978 -2.3579 2.0628 16 6 3.1569 -2.3016 -0.2962 17 1 2.2581 -2.5520 -0.8598 18 6 4.0848 -3.5331 -0.1820 19 6 5.0338 -3.3250 -1.3830 20 7 5.0325 -1.8796 -1.6372 21 6 6.0419 -1.1798 -2.4356 22 6 3.9832 -1.2788 -1.0445 23 8 3.7363 -0.0927 -1.1004 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.5295 0.8908 2.4843 32 1 2.4628 -0.4293 3.2291 33 1 0.0893 0.5646 5.8605 34 1 4.6366 -3.5201 0.7580 35 1 3.5191 -4.4589 -0.2870 36 1 6.0393 -3.6630 -1.1322 37 1 4.6622 -3.8630 -2.2551 38 1 5.7271 -1.1553 -3.4788 39 1 6.1548 -0.1605 -2.0662 40 1 6.9949 -1.7028 -2.3559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589835207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:03 Heat of formation + Delta-G solvation = -54.014613 kcal Electronic energy + Delta-G solvation = -22051.369394 eV Core-core repulsion = 18866.897554 eV Total energy + Delta-G solvation = -3184.471840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86819 -38.42014 -36.76969 -35.47866 -32.99329 -32.46168 -30.67882 -28.52001 -27.01523 -26.59424 -26.30021 -23.29703 -21.74891 -21.16814 -19.76717 -17.88023 -17.13891 -16.75981 -16.35608 -16.19380 -15.23973 -14.84332 -14.40737 -14.05318 -13.76159 -13.48417 -13.29461 -12.96240 -12.62060 -12.60813 -12.44165 -12.12680 -12.01396 -11.73745 -11.45697 -11.28485 -11.09514 -10.98534 -10.82889 -10.51474 -10.43161 -10.17701 -9.99261 -9.49831 -9.33120 -8.96584 -8.72374 -8.34708 -7.51450 -5.96098 -3.99315 2.52452 2.89681 3.36092 3.40093 3.40940 3.47753 3.99383 4.36105 4.45501 4.52981 4.88124 4.97319 5.12255 5.18571 5.27344 5.37207 5.45228 5.45983 5.56577 5.65814 5.86040 5.96263 6.05802 6.16782 6.31224 6.37437 6.47271 6.59020 6.67832 6.91042 7.07428 7.14904 7.24460 7.56396 7.67740 8.00809 8.22428 8.33418 8.55563 8.96849 9.14212 9.64064 11.12041 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027696 B = 0.005929 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.722070 B = 4721.281177 C = 5177.817550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 C -0.144 4.144 4 N -0.577 5.577 5 C 0.246 3.754 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.520 3.480 15 O -0.540 6.540 16 C -0.151 4.151 17 H 0.127 0.873 18 C -0.117 4.117 19 C 0.103 3.897 20 N -0.627 5.627 21 C 0.099 3.901 22 C 0.523 3.477 23 O -0.501 6.501 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.143 -5.064 -16.461 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 C -0.202 4.202 4 N -0.306 5.306 5 C 0.127 3.873 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.304 3.696 15 O -0.419 6.419 16 C -0.176 4.176 17 H 0.144 0.856 18 C -0.155 4.155 19 C -0.020 4.020 20 N -0.362 5.362 21 C -0.043 4.043 22 C 0.310 3.690 23 O -0.376 6.376 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.256 -4.549 -15.815 18.411 hybrid contribution -0.961 -0.492 0.247 1.108 sum 7.294 -5.041 -15.568 17.916 Atomic orbital electron populations 1.22227 0.95830 1.01809 1.02057 1.21180 0.93356 0.94100 0.87876 1.22028 1.02207 0.95452 1.00521 1.48238 1.47287 1.26008 1.09106 1.19251 0.96182 0.94742 0.77144 1.21402 1.07545 1.24792 1.01877 0.92444 1.24926 0.97591 0.95302 0.96361 1.69932 1.39569 1.33424 1.10600 0.86606 0.83507 0.79834 0.77734 1.20290 1.21292 1.20303 1.19481 0.79904 0.81530 0.88681 1.90661 1.55047 1.57574 1.38581 1.22189 1.00581 0.96880 0.97901 0.85568 1.22576 0.96666 0.96940 0.99288 1.22153 1.01107 0.80509 0.98207 1.48203 1.26841 1.08856 1.52335 1.21506 0.90319 0.97900 0.94564 1.20611 0.81263 0.88524 0.78573 1.90801 1.70779 1.14795 1.61230 0.90341 0.93488 0.93210 0.89810 0.91312 0.93274 0.92879 0.94627 0.94243 0.92800 0.88058 0.88858 0.90286 0.91118 0.92756 0.90666 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.47 37.16 0.31 -2.67 16 2 C 0.14 2.65 2.22 -67.93 -0.15 2.50 16 3 C -0.14 -2.69 8.27 37.16 0.31 -2.38 16 4 N -0.58 -13.04 2.38 -167.47 -0.40 -13.44 16 5 C 0.25 6.66 4.59 -5.20 -0.02 6.63 16 6 C -0.52 -14.74 7.83 -34.44 -0.27 -15.01 16 7 H 0.06 1.62 7.63 -52.49 -0.40 1.22 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 10 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 C 0.52 11.21 7.06 -10.98 -0.08 11.14 16 15 O -0.54 -13.60 15.08 5.55 0.08 -13.52 16 16 C -0.15 -2.33 2.40 -91.78 -0.22 -2.55 16 17 H 0.13 1.71 7.77 -51.93 -0.40 1.30 16 18 C -0.12 -1.41 6.46 -25.10 -0.16 -1.57 16 19 C 0.10 0.94 7.35 -3.12 -0.02 0.91 16 20 N -0.63 -7.33 3.34 -180.22 -0.60 -7.93 16 21 C 0.10 0.88 10.96 59.85 0.66 1.54 16 22 C 0.52 8.00 6.95 -10.75 -0.07 7.92 16 23 O -0.50 -8.84 11.14 5.56 0.06 -8.78 16 24 H 0.08 1.67 6.92 -51.93 -0.36 1.31 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.47 4.12 -51.93 -0.21 1.26 16 28 H 0.07 1.35 6.10 -51.93 -0.32 1.03 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.06 6.66 -51.93 -0.35 0.71 16 31 H 0.04 0.99 6.43 -51.93 -0.33 0.66 16 32 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.10 1.46 7.03 -51.93 -0.36 1.09 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.77 7.94 -51.93 -0.41 0.35 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -34.24 315.58 -6.26 -40.50 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.05 Total: -0.45 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 0.18 Total: 8.10 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.26 Total: -47.70 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.15 Total: -22.30 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.24 -6.26 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589835207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.515 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds