Wall clock time and date at job start Mon Mar 30 2020 01:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47069 * 2 1 4 4 N 1.46496 * 109.46745 * 119.99780 * 2 1 3 5 5 C 1.46491 * 120.00453 * 299.99749 * 4 2 1 6 6 C 1.50702 * 109.46957 * 90.00133 * 5 4 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.34780 * 119.99526 * 120.00252 * 4 2 1 15 15 O 1.21285 * 119.99673 * 179.97438 * 14 4 2 16 16 C 1.50700 * 120.00400 * 359.97438 * 14 4 2 17 17 H 1.08999 * 110.43413 * 300.70912 * 16 14 4 18 18 C 1.54621 * 110.48954 * 178.16037 * 16 14 4 19 19 C 1.54478 * 101.76783 * 216.52702 * 18 16 14 20 20 N 1.46762 * 105.47473 * 25.41492 * 19 18 16 21 21 C 1.46499 * 124.35366 * 162.98281 * 20 19 18 22 22 C 1.34659 * 111.33683 * 342.87236 * 20 19 18 23 23 O 1.21282 * 125.07650 * 180.51811 * 22 20 19 24 24 H 1.08996 * 109.46993 * 300.00218 * 1 2 3 25 25 H 1.08997 * 109.47185 * 60.00198 * 1 2 3 26 26 H 1.08997 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46618 * 239.99633 * 2 1 3 28 28 H 1.08999 * 109.47175 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47090 * 300.00182 * 3 2 1 30 30 H 1.08996 * 109.47391 * 60.00025 * 3 2 1 31 31 H 1.09004 * 109.47166 * 330.00399 * 5 4 2 32 32 H 1.08994 * 109.47507 * 210.00106 * 5 4 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 34 34 H 1.09005 * 110.97274 * 334.64546 * 18 16 14 35 35 H 1.09001 * 110.97367 * 98.37233 * 18 16 14 36 36 H 1.09000 * 110.24750 * 144.41756 * 19 18 16 37 37 H 1.08997 * 110.24917 * 266.32923 * 19 18 16 38 38 H 1.08999 * 109.46740 * 90.00253 * 21 20 19 39 39 H 1.08999 * 109.47131 * 210.00117 * 21 20 19 40 40 H 1.09002 * 109.47040 * 330.00543 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 0.3830 -0.8387 2.9829 7 1 -0.1176 -1.5527 2.3457 8 6 -0.1472 -0.5253 4.2166 9 7 0.4625 0.3438 4.9927 10 14 -1.7315 -1.3351 4.7853 11 1 -1.5434 -2.8072 4.8392 12 1 -2.0877 -0.8314 6.1361 13 1 -2.8233 -1.0102 3.8326 14 6 2.7932 -1.7864 1.0725 15 8 3.1978 -2.3579 2.0628 16 6 3.1569 -2.3016 -0.2962 17 1 2.2581 -2.5520 -0.8598 18 6 4.0848 -3.5331 -0.1820 19 6 5.0338 -3.3250 -1.3830 20 7 5.0325 -1.8796 -1.6372 21 6 6.0419 -1.1798 -2.4356 22 6 3.9832 -1.2788 -1.0445 23 8 3.7363 -0.0927 -1.1004 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.5295 0.8908 2.4843 32 1 2.4628 -0.4293 3.2291 33 1 0.0893 0.5646 5.8605 34 1 4.6366 -3.5201 0.7580 35 1 3.5191 -4.4589 -0.2870 36 1 6.0393 -3.6630 -1.1322 37 1 4.6622 -3.8630 -2.2551 38 1 5.7271 -1.1553 -3.4788 39 1 6.1548 -0.1605 -2.0662 40 1 6.9949 -1.7028 -2.3559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589835207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:03 Heat of formation + Delta-G solvation = -77.783537 kcal Electronic energy + Delta-G solvation = -22052.400092 eV Core-core repulsion = 18866.897554 eV Total energy + Delta-G solvation = -3185.502538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.12002 -39.96659 -38.11203 -36.98080 -34.95223 -33.73415 -32.42928 -30.04843 -28.48213 -27.83714 -27.60898 -25.14349 -23.20473 -22.57707 -20.93434 -19.39418 -18.67623 -18.51086 -17.83647 -17.38346 -16.92511 -16.25395 -16.01479 -15.45652 -15.12789 -14.97624 -14.61063 -14.39415 -14.04234 -13.93209 -13.66982 -13.45219 -13.28875 -13.19071 -13.01135 -12.82417 -12.77588 -12.60180 -12.44971 -12.12174 -12.06413 -11.94126 -11.65622 -11.49946 -10.72771 -10.63055 -10.59577 -9.64900 -9.40154 -8.18320 -6.31385 1.31159 1.37168 1.41544 1.48631 1.72218 2.11678 2.34131 2.46454 3.10799 3.28522 3.35912 3.76225 3.96943 4.09024 4.19254 4.39670 4.42322 4.45533 4.55330 4.69765 4.72509 4.85397 4.87958 4.91302 5.01334 5.02308 5.11530 5.14264 5.20902 5.22002 5.38935 5.55176 5.64626 5.70022 5.89321 6.01531 6.10463 6.72431 6.81989 7.11754 7.28451 7.44579 8.89365 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027696 B = 0.005929 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.722070 B = 4721.281177 C = 5177.817550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 C -0.135 4.135 4 N -0.585 5.585 5 C 0.265 3.735 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.967 3.033 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.261 1.261 14 C 0.507 3.493 15 O -0.588 6.588 16 C -0.146 4.146 17 H 0.151 0.849 18 C -0.115 4.115 19 C 0.108 3.892 20 N -0.620 5.620 21 C 0.094 3.906 22 C 0.513 3.487 23 O -0.534 6.534 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.018 0.982 32 H -0.010 1.010 33 H 0.265 0.735 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.833 -6.843 -19.366 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 C -0.193 4.193 4 N -0.314 5.314 5 C 0.143 3.857 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.791 3.209 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.185 1.185 14 C 0.294 3.706 15 O -0.470 6.470 16 C -0.170 4.170 17 H 0.169 0.831 18 C -0.153 4.153 19 C -0.013 4.013 20 N -0.354 5.354 21 C -0.047 4.047 22 C 0.300 3.700 23 O -0.413 6.413 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.008 0.992 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.975 -6.350 -18.784 21.372 hybrid contribution -0.755 0.067 1.125 1.357 sum 7.220 -6.282 -17.659 20.085 Atomic orbital electron populations 1.22159 0.95170 1.01789 1.02130 1.21441 0.93795 0.94170 0.87104 1.21940 1.01349 0.95385 1.00635 1.48289 1.47867 1.26881 1.08406 1.18658 0.94246 0.93758 0.78995 1.21602 1.07854 1.24714 1.02257 0.92427 1.25878 1.01328 0.95793 0.96402 1.70075 1.41404 1.34788 1.11036 0.85478 0.79230 0.78532 0.77640 1.20024 1.20605 1.18547 1.20560 0.78514 0.80519 0.90961 1.90624 1.56424 1.58867 1.41087 1.22198 1.02594 0.98321 0.93882 0.83135 1.22634 0.96620 0.96449 0.99559 1.22387 1.01856 0.79063 0.98030 1.48341 1.25752 1.10065 1.51212 1.21728 0.90912 0.97146 0.94872 1.20605 0.82286 0.88027 0.79124 1.90771 1.71910 1.15891 1.62686 0.93757 0.89809 0.93225 0.87280 0.92559 0.90355 0.95361 0.96362 0.99186 0.92595 0.91014 0.86260 0.87848 0.87378 0.90872 0.92530 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 8.47 71.98 0.61 -4.99 16 2 C 0.14 5.24 2.22 44.99 0.10 5.34 16 3 C -0.14 -5.11 8.27 71.98 0.60 -4.51 16 4 N -0.59 -27.46 2.38 -802.15 -1.91 -29.36 16 5 C 0.26 15.24 4.59 85.64 0.39 15.64 16 6 C -0.53 -31.03 7.83 25.60 0.20 -30.83 16 7 H 0.06 3.32 7.63 -2.91 -0.02 3.30 16 8 C 0.00 0.25 5.46 84.66 0.46 0.71 16 9 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 10 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 11 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 14 C 0.51 22.48 7.06 87.66 0.62 23.10 16 15 O -0.59 -31.13 15.08 -3.05 -0.05 -31.18 16 16 C -0.15 -4.31 2.40 -11.55 -0.03 -4.34 16 17 H 0.15 3.66 7.77 -2.39 -0.02 3.64 16 18 C -0.11 -2.51 6.46 31.65 0.20 -2.31 16 19 C 0.11 1.50 7.35 86.83 0.64 2.14 16 20 N -0.62 -12.56 3.34 -842.54 -2.81 -15.38 16 21 C 0.09 1.38 10.96 127.77 1.40 2.78 16 22 C 0.51 14.87 6.95 87.86 0.61 15.48 16 23 O -0.53 -18.49 11.14 -3.03 -0.03 -18.53 16 24 H 0.04 1.90 6.92 -2.39 -0.02 1.89 16 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.11 3.67 4.12 -2.39 -0.01 3.66 16 28 H 0.06 2.27 6.10 -2.39 -0.01 2.25 16 29 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.03 1.17 6.66 -2.39 -0.02 1.15 16 31 H 0.02 1.10 6.43 -2.38 -0.02 1.09 16 32 H -0.01 -0.66 7.42 -2.39 -0.02 -0.68 16 33 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 34 H 0.07 2.04 7.03 -2.38 -0.02 2.02 16 35 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 1.06 7.94 -2.39 -0.02 1.05 16 40 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -79.91 315.58 4.35 -75.56 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.03 Total: 10.87 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 5.81 Total: 18.21 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -4.43 Total: -102.88 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.08 Total: -49.70 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -79.91 4.35 -75.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589835207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.224 kcal (2) G-P(sol) polarization free energy of solvation -79.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds