Wall clock time and date at job start Mon Mar 30 2020 00:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50704 * 120.00196 * 2 1 4 4 C 1.31003 * 119.99762 * 180.02562 * 2 1 3 5 5 C 1.50691 * 120.00181 * 7.64035 * 4 2 1 6 6 N 1.46497 * 109.47364 * 127.07626 * 5 4 2 7 7 C 1.34784 * 119.99813 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00130 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99464 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.65184 * 359.95689 * 9 7 6 11 11 C 1.54377 * 107.28937 * 181.13084 * 10 9 7 12 12 C 1.55155 * 102.92070 * 22.13807 * 11 10 9 13 13 O 1.42894 * 111.00282 * 82.64042 * 12 11 10 14 14 C 1.50697 * 111.00087 * 206.45763 * 12 11 10 15 15 H 1.08000 * 120.00344 * 358.43057 * 14 12 11 16 16 C 1.37888 * 119.99647 * 178.16440 * 14 12 11 17 17 N 1.31509 * 119.99970 * 354.05805 * 16 14 12 18 18 Si 1.86796 * 119.99783 * 174.06592 * 16 14 12 19 19 H 1.48503 * 109.47456 * 94.98965 * 18 16 14 20 20 H 1.48507 * 109.46958 * 214.98673 * 18 16 14 21 21 H 1.48502 * 109.47368 * 334.98611 * 18 16 14 22 22 C 1.47432 * 125.64918 * 180.02562 * 9 7 6 23 23 H 1.08997 * 109.46943 * 185.14761 * 1 2 3 24 24 H 1.09004 * 109.46688 * 305.14538 * 1 2 3 25 25 H 1.08994 * 109.46789 * 65.14411 * 1 2 3 26 26 H 1.08991 * 109.47120 * 270.00462 * 3 2 1 27 27 H 1.08998 * 109.46463 * 30.00369 * 3 2 1 28 28 H 1.09000 * 109.47207 * 150.00144 * 3 2 1 29 29 H 1.08000 * 119.99435 * 187.64088 * 4 2 1 30 30 H 1.08996 * 109.47433 * 7.07047 * 5 4 2 31 31 H 1.09002 * 109.47029 * 247.07734 * 5 4 2 32 32 H 0.97001 * 120.00393 * 359.97438 * 6 5 4 33 33 H 1.08997 * 109.88481 * 300.51038 * 10 9 7 34 34 H 1.09000 * 109.88307 * 61.67757 * 10 9 7 35 35 H 1.09006 * 110.70054 * 263.79333 * 11 10 9 36 36 H 1.08994 * 110.75472 * 140.50896 * 11 10 9 37 37 H 0.96703 * 114.00038 * 183.17632 * 13 12 11 38 38 H 0.96998 * 120.00449 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.36051 * 36.99281 * 22 9 7 40 40 H 1.08996 * 110.45361 * 274.72049 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4186 -2.4337 -0.1746 6 7 2.0224 -3.1992 -1.2680 7 6 1.5196 -4.4033 -1.6056 8 8 0.5646 -4.8539 -1.0030 9 7 2.0748 -5.1073 -2.6118 10 6 3.2261 -4.6824 -3.4215 11 6 3.4868 -5.7898 -4.4650 12 6 2.1178 -6.5151 -4.5506 13 8 1.2266 -5.8249 -5.4288 14 6 2.2922 -7.9490 -4.9801 15 1 3.2776 -8.3292 -5.2056 16 6 1.1942 -8.7771 -5.0799 17 7 0.0125 -8.3522 -4.6895 18 14 1.3854 -10.5025 -5.7696 19 1 1.5664 -11.4647 -4.6530 20 1 0.1700 -10.8641 -6.5425 21 1 2.5718 -10.5505 -6.6615 22 6 1.6275 -6.4304 -3.0838 23 1 -0.3633 -1.0235 0.0922 24 1 -0.3633 0.5916 0.8404 25 1 -0.3633 0.4319 -0.9324 26 1 2.4422 1.6198 -1.0276 27 1 1.6715 2.0647 0.5139 28 1 3.2131 1.1748 0.5138 29 1 3.2348 -1.1387 0.1239 30 1 0.3746 -2.2263 -0.4095 31 1 1.4755 -3.0113 0.7481 32 1 2.7842 -2.8396 -1.7490 33 1 2.9977 -3.7441 -3.9270 34 1 4.1020 -4.5591 -2.7846 35 1 4.2633 -6.4715 -4.1177 36 1 3.7549 -5.3571 -5.4287 37 1 0.3424 -6.2134 -5.4769 38 1 -0.7598 -8.9348 -4.7593 39 1 0.5405 -6.5003 -3.0425 40 1 2.0808 -7.2213 -2.4863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592017745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:47 Heat of formation + Delta-G solvation = -64.060823 kcal Electronic energy + Delta-G solvation = -20786.141171 eV Core-core repulsion = 17601.233694 eV Total energy + Delta-G solvation = -3184.907476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.61110 -37.67379 -36.76410 -34.20494 -33.75158 -32.17395 -30.24100 -28.81939 -27.93706 -27.60117 -25.17045 -23.72987 -22.32095 -19.62622 -19.56231 -18.21216 -17.30618 -16.97125 -15.99867 -15.51814 -14.99639 -14.76981 -14.53842 -14.26888 -14.10375 -13.61526 -13.36374 -12.99226 -12.74821 -12.57904 -12.44131 -12.10496 -12.00429 -11.71363 -11.64594 -11.38545 -11.01882 -10.90179 -10.74756 -10.55519 -10.46969 -10.16547 -9.62760 -9.33553 -9.05769 -8.68844 -8.63193 -8.31564 -7.62246 -6.25318 -4.34743 1.84187 3.21676 3.29870 3.32448 3.37135 3.81614 4.28186 4.57248 4.60249 4.74227 5.00872 5.06043 5.29969 5.39531 5.44461 5.47429 5.53398 5.60187 5.68458 5.77000 5.81423 5.84878 5.91027 6.05001 6.16532 6.48120 6.54618 6.64900 6.74353 6.88771 6.93163 7.03270 7.28563 7.36202 7.71621 7.77497 8.05167 8.59831 8.69736 9.20105 9.34222 9.40122 10.81322 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040364 B = 0.003847 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.515050 B = 7276.287932 C = 7533.885360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C -0.118 4.118 4 C -0.182 4.182 5 C 0.163 3.837 6 N -0.748 5.748 7 C 0.715 3.285 8 O -0.598 6.598 9 N -0.628 5.628 10 C 0.106 3.894 11 C -0.116 4.116 12 C 0.248 3.752 13 O -0.582 6.582 14 C -0.539 4.539 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.891 5.891 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.114 3.886 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.393 0.607 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.382 0.618 38 H 0.270 0.730 39 H 0.084 0.916 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 14.570 6.704 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 C -0.174 4.174 4 C -0.201 4.201 5 C 0.039 3.961 6 N -0.405 5.405 7 C 0.417 3.583 8 O -0.478 6.478 9 N -0.365 5.365 10 C -0.018 4.018 11 C -0.154 4.154 12 C 0.207 3.793 13 O -0.391 6.391 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.529 5.529 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.008 4.008 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.226 0.774 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.697 14.579 7.148 16.903 hybrid contribution 0.015 -1.092 -0.389 1.159 sum 4.712 13.487 6.759 15.805 Atomic orbital electron populations 1.21100 0.92202 1.03578 1.02189 1.21671 0.96082 0.94936 0.98707 1.20836 0.99564 0.94809 1.02235 1.22701 0.99878 0.93439 1.04061 1.20219 0.96713 0.89136 0.89995 1.45089 1.37245 1.19467 1.38699 1.15528 0.82345 0.80071 0.80327 1.90875 1.29654 1.70896 1.56326 1.47930 1.33370 1.21808 1.33421 1.21922 0.87978 0.98696 0.93192 1.22598 0.99069 0.96328 0.97367 1.19616 0.85070 0.89929 0.84659 1.86087 1.27310 1.58128 1.67578 1.21472 0.94309 0.94724 1.47203 0.91514 1.25087 0.95206 0.99075 0.93877 1.69731 0.99679 1.37717 1.45813 0.86402 0.77895 0.83524 0.79143 1.20544 1.20940 1.19662 1.23148 1.01517 0.79336 0.96825 0.90526 0.91388 0.91458 0.91170 0.91956 0.91835 0.86825 0.90624 0.91518 0.77386 0.92716 0.93218 0.90469 0.90797 0.76809 0.92006 0.89796 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.79 36.01 0.35 -0.89 16 2 C -0.11 -1.07 6.05 -101.06 -0.61 -1.68 16 3 C -0.12 -0.86 10.04 36.01 0.36 -0.50 16 4 C -0.18 -1.92 9.22 -36.03 -0.33 -2.25 16 5 C 0.16 2.24 5.77 -5.20 -0.03 2.21 16 6 N -0.75 -11.94 5.51 -66.42 -0.37 -12.31 16 7 C 0.72 15.15 8.49 -86.91 -0.74 14.41 16 8 O -0.60 -15.00 16.60 5.30 0.09 -14.91 16 9 N -0.63 -13.42 3.33 -176.22 -0.59 -14.01 16 10 C 0.11 1.88 6.15 -3.04 -0.02 1.86 16 11 C -0.12 -2.30 6.13 -24.87 -0.15 -2.45 16 12 C 0.25 6.05 0.88 -89.64 -0.08 5.97 16 13 O -0.58 -14.97 13.16 -35.23 -0.46 -15.43 16 14 C -0.54 -14.06 8.25 -34.44 -0.28 -14.34 16 15 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 16 C 0.07 1.86 5.27 -17.82 -0.09 1.77 16 17 N -0.89 -24.00 10.72 55.43 0.59 -23.41 16 18 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.11 2.81 5.48 -2.54 -0.01 2.79 16 23 H 0.08 0.80 5.23 -51.93 -0.27 0.53 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.06 0.42 8.04 -51.93 -0.42 0.01 16 29 H 0.11 1.06 8.01 -52.49 -0.42 0.64 16 30 H 0.08 1.10 5.27 -51.93 -0.27 0.83 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.39 5.32 7.45 -40.82 -0.30 5.02 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.44 8.02 -51.93 -0.42 1.03 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.38 10.12 7.37 45.56 0.34 10.46 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.08 2.34 7.41 -51.93 -0.38 1.96 16 40 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -30.44 327.72 -7.95 -38.39 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.49 Total: 14.44 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.64 Total: 6.89 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.36 Total: -49.72 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.38 Total: -30.34 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.44 -7.95 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592017745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.667 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds