Wall clock time and date at job start Mon Mar 30 2020 00:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50704 * 120.00196 * 2 1 4 4 C 1.31003 * 119.99762 * 180.02562 * 2 1 3 5 5 C 1.50691 * 120.00181 * 7.64035 * 4 2 1 6 6 N 1.46497 * 109.47364 * 127.07626 * 5 4 2 7 7 C 1.34784 * 119.99813 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00130 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99464 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.65184 * 359.95689 * 9 7 6 11 11 C 1.54377 * 107.28937 * 181.13084 * 10 9 7 12 12 C 1.55155 * 102.92070 * 22.13807 * 11 10 9 13 13 O 1.42894 * 111.00282 * 82.64042 * 12 11 10 14 14 C 1.50697 * 111.00087 * 206.45763 * 12 11 10 15 15 H 1.08000 * 120.00344 * 358.43057 * 14 12 11 16 16 C 1.37888 * 119.99647 * 178.16440 * 14 12 11 17 17 N 1.31509 * 119.99970 * 354.05805 * 16 14 12 18 18 Si 1.86796 * 119.99783 * 174.06592 * 16 14 12 19 19 H 1.48503 * 109.47456 * 94.98965 * 18 16 14 20 20 H 1.48507 * 109.46958 * 214.98673 * 18 16 14 21 21 H 1.48502 * 109.47368 * 334.98611 * 18 16 14 22 22 C 1.47432 * 125.64918 * 180.02562 * 9 7 6 23 23 H 1.08997 * 109.46943 * 185.14761 * 1 2 3 24 24 H 1.09004 * 109.46688 * 305.14538 * 1 2 3 25 25 H 1.08994 * 109.46789 * 65.14411 * 1 2 3 26 26 H 1.08991 * 109.47120 * 270.00462 * 3 2 1 27 27 H 1.08998 * 109.46463 * 30.00369 * 3 2 1 28 28 H 1.09000 * 109.47207 * 150.00144 * 3 2 1 29 29 H 1.08000 * 119.99435 * 187.64088 * 4 2 1 30 30 H 1.08996 * 109.47433 * 7.07047 * 5 4 2 31 31 H 1.09002 * 109.47029 * 247.07734 * 5 4 2 32 32 H 0.97001 * 120.00393 * 359.97438 * 6 5 4 33 33 H 1.08997 * 109.88481 * 300.51038 * 10 9 7 34 34 H 1.09000 * 109.88307 * 61.67757 * 10 9 7 35 35 H 1.09006 * 110.70054 * 263.79333 * 11 10 9 36 36 H 1.08994 * 110.75472 * 140.50896 * 11 10 9 37 37 H 0.96703 * 114.00038 * 183.17632 * 13 12 11 38 38 H 0.96998 * 120.00449 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.36051 * 36.99281 * 22 9 7 40 40 H 1.08996 * 110.45361 * 274.72049 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4186 -2.4337 -0.1746 6 7 2.0224 -3.1992 -1.2680 7 6 1.5196 -4.4033 -1.6056 8 8 0.5646 -4.8539 -1.0030 9 7 2.0748 -5.1073 -2.6118 10 6 3.2261 -4.6824 -3.4215 11 6 3.4868 -5.7898 -4.4650 12 6 2.1178 -6.5151 -4.5506 13 8 1.2266 -5.8249 -5.4288 14 6 2.2922 -7.9490 -4.9801 15 1 3.2776 -8.3292 -5.2056 16 6 1.1942 -8.7771 -5.0799 17 7 0.0125 -8.3522 -4.6895 18 14 1.3854 -10.5025 -5.7696 19 1 1.5664 -11.4647 -4.6530 20 1 0.1700 -10.8641 -6.5425 21 1 2.5718 -10.5505 -6.6615 22 6 1.6275 -6.4304 -3.0838 23 1 -0.3633 -1.0235 0.0922 24 1 -0.3633 0.5916 0.8404 25 1 -0.3633 0.4319 -0.9324 26 1 2.4422 1.6198 -1.0276 27 1 1.6715 2.0647 0.5139 28 1 3.2131 1.1748 0.5138 29 1 3.2348 -1.1387 0.1239 30 1 0.3746 -2.2263 -0.4095 31 1 1.4755 -3.0113 0.7481 32 1 2.7842 -2.8396 -1.7490 33 1 2.9977 -3.7441 -3.9270 34 1 4.1020 -4.5591 -2.7846 35 1 4.2633 -6.4715 -4.1177 36 1 3.7549 -5.3571 -5.4287 37 1 0.3424 -6.2134 -5.4769 38 1 -0.7598 -8.9348 -4.7593 39 1 0.5405 -6.5003 -3.0425 40 1 2.0808 -7.2213 -2.4863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592017745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:46 Heat of formation + Delta-G solvation = -86.016891 kcal Electronic energy + Delta-G solvation = -20787.093257 eV Core-core repulsion = 17601.233694 eV Total energy + Delta-G solvation = -3185.859563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24749 -39.24012 -37.90139 -36.05497 -35.08164 -34.19594 -31.87562 -29.97041 -29.34297 -28.62494 -26.93932 -24.96620 -23.83729 -21.46005 -21.07697 -19.52482 -19.02150 -18.34479 -17.39954 -17.02785 -16.87584 -16.23605 -16.07778 -15.61479 -15.07416 -14.87662 -14.74561 -14.63660 -14.40286 -13.73576 -13.62085 -13.49398 -13.21717 -13.16912 -12.82919 -12.81885 -12.50380 -12.40739 -12.30790 -12.22664 -12.08863 -11.75003 -11.36988 -11.18197 -10.67720 -10.32543 -10.25002 -9.69876 -9.29398 -8.23804 -6.40875 0.98942 1.42506 1.45079 1.55630 1.87868 2.15116 2.39446 3.01484 3.18449 3.75704 3.80753 4.03863 4.10540 4.18573 4.22252 4.35389 4.50222 4.62360 4.66708 4.74346 4.77849 4.83295 4.86287 4.95365 5.08119 5.10906 5.12171 5.20770 5.31753 5.39872 5.46456 5.48848 5.70758 5.77133 5.94468 6.04918 6.20607 6.66316 7.07730 7.29552 7.34388 7.57535 8.81228 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040364 B = 0.003847 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.515050 B = 7276.287932 C = 7533.885360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.117 4.117 4 C -0.194 4.194 5 C 0.162 3.838 6 N -0.726 5.726 7 C 0.708 3.292 8 O -0.647 6.647 9 N -0.634 5.634 10 C 0.107 3.893 11 C -0.110 4.110 12 C 0.232 3.768 13 O -0.587 6.587 14 C -0.556 4.556 15 H 0.071 0.929 16 C 0.025 3.975 17 N -0.916 5.916 18 Si 0.966 3.034 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.264 1.264 22 C 0.128 3.872 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.132 0.868 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.408 0.592 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.373 0.627 38 H 0.269 0.731 39 H 0.040 0.960 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 16.264 6.594 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.173 4.173 4 C -0.212 4.212 5 C 0.039 3.961 6 N -0.382 5.382 7 C 0.409 3.591 8 O -0.530 6.530 9 N -0.371 5.371 10 C -0.015 4.015 11 C -0.148 4.148 12 C 0.191 3.809 13 O -0.394 6.394 14 C -0.595 4.595 15 H 0.089 0.911 16 C -0.176 4.176 17 N -0.555 5.555 18 Si 0.791 3.209 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.188 1.188 22 C 0.004 3.996 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.245 0.755 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.222 0.778 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.838 16.334 7.030 19.053 hybrid contribution -0.677 -1.547 -0.318 1.718 sum 6.161 14.788 6.712 17.369 Atomic orbital electron populations 1.21158 0.92464 1.02825 1.03176 1.21968 0.96191 0.95755 0.96359 1.20882 0.99893 0.93541 1.03015 1.22537 1.00496 0.91785 1.06394 1.20314 0.96777 0.90413 0.88636 1.44944 1.37043 1.17545 1.38710 1.15785 0.82006 0.81245 0.80018 1.90834 1.31889 1.72335 1.57928 1.47881 1.34428 1.20819 1.33925 1.22128 0.87955 0.98372 0.93046 1.22606 0.96446 0.96816 0.98884 1.19862 0.87006 0.90228 0.83792 1.86078 1.27023 1.58301 1.68021 1.21820 0.94541 0.95874 1.47232 0.91106 1.25861 0.94973 1.02684 0.94111 1.69860 1.00255 1.38845 1.46560 0.85429 0.77911 0.79158 0.78418 1.20416 1.20914 1.18808 1.22689 0.98613 0.80877 0.97387 0.92312 0.89666 0.91018 0.90424 0.90796 0.90795 0.85019 0.91719 0.92637 0.75531 0.90978 0.89156 0.89205 0.89513 0.77819 0.92169 0.94111 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.79 71.24 0.70 -1.68 16 2 C -0.10 -1.69 6.05 -16.49 -0.10 -1.79 16 3 C -0.12 -1.32 10.04 71.24 0.71 -0.60 16 4 C -0.19 -3.68 9.22 25.64 0.24 -3.44 16 5 C 0.16 4.37 5.77 85.63 0.49 4.86 16 6 N -0.73 -22.34 5.51 -482.32 -2.66 -24.99 16 7 C 0.71 30.15 8.49 179.05 1.52 31.67 16 8 O -0.65 -33.66 16.60 -3.96 -0.07 -33.72 16 9 N -0.63 -26.91 3.33 -829.69 -2.76 -29.67 16 10 C 0.11 3.51 6.15 86.75 0.53 4.05 16 11 C -0.11 -4.14 6.13 31.80 0.20 -3.94 16 12 C 0.23 11.33 0.88 -10.16 -0.01 11.32 16 13 O -0.59 -30.53 13.16 -148.98 -1.96 -32.49 16 14 C -0.56 -29.11 8.25 25.60 0.21 -28.90 16 15 H 0.07 3.56 7.78 -2.91 -0.02 3.53 16 16 C 0.02 1.30 5.27 84.66 0.45 1.74 16 17 N -0.92 -50.86 10.72 21.45 0.23 -50.63 16 18 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 C 0.13 6.51 5.48 86.85 0.48 6.98 16 23 H 0.06 1.22 5.23 -2.39 -0.01 1.21 16 24 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 28 H 0.07 0.71 8.04 -2.39 -0.02 0.69 16 29 H 0.13 2.04 8.01 -2.91 -0.02 2.01 16 30 H 0.06 1.91 5.27 -2.39 -0.01 1.90 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.41 9.97 7.45 -92.71 -0.69 9.28 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 3.13 8.02 -2.38 -0.02 3.11 16 36 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.37 20.50 7.37 -74.06 -0.55 19.95 16 38 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.04 2.39 7.41 -2.39 -0.02 2.38 16 40 H 0.04 2.05 8.03 -2.39 -0.02 2.04 16 Total: -1.00 -67.95 327.72 0.04 -67.91 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -0.19 Total: 39.24 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 5.42 Total: 20.27 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -5.19 Total: -105.29 kcal Atomic # 8 Polarization: -64.18 SS G_CDS: -2.03 Total: -66.21 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -67.95 0.04 -67.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592017745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.104 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds