Wall clock time and date at job start Mon Mar 30 2020 01:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47016 * 2 1 4 4 C 1.42908 * 113.99529 * 184.97494 * 3 2 1 5 5 H 1.08998 * 109.47209 * 325.17799 * 4 3 2 6 6 C 1.53008 * 109.46521 * 205.17618 * 4 3 2 7 7 C 1.52997 * 109.46774 * 65.30311 * 6 4 3 8 8 C 1.50694 * 109.47128 * 85.18237 * 4 3 2 9 9 N 1.29954 * 126.29151 * 45.02063 * 8 4 3 10 10 O 1.21292 * 110.25249 * 179.73765 * 9 8 4 11 11 C 1.33645 * 109.81155 * 0.02562 * 10 9 8 12 12 C 1.50707 * 126.55074 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.46599 * 269.97089 * 12 11 10 14 14 C 1.53005 * 109.46770 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46846 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00310 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99703 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99630 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99922 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47064 * 90.00298 * 19 17 15 21 21 H 1.48502 * 109.46889 * 210.00219 * 19 17 15 22 22 H 1.48500 * 109.46912 * 329.99880 * 19 17 15 23 23 N 1.31119 * 106.90030 * 359.97438 * 11 10 9 24 24 H 1.08996 * 109.47792 * 300.00539 * 1 2 3 25 25 H 1.09008 * 109.47051 * 60.00226 * 1 2 3 26 26 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47792 * 239.99461 * 2 1 3 28 28 H 1.08999 * 109.46637 * 119.99375 * 2 1 3 29 29 H 1.09003 * 109.46745 * 185.29847 * 6 4 3 30 30 H 1.08996 * 109.47187 * 305.30099 * 6 4 3 31 31 H 1.09009 * 109.46907 * 174.98979 * 7 6 4 32 32 H 1.08992 * 109.47470 * 294.98744 * 7 6 4 33 33 H 1.08997 * 109.47525 * 54.99334 * 7 6 4 34 34 H 1.09000 * 109.47061 * 29.96855 * 12 11 10 35 35 H 1.08994 * 109.47448 * 149.97164 * 12 11 10 36 36 H 1.09000 * 109.47223 * 299.99667 * 13 12 11 37 37 H 1.09001 * 109.47027 * 60.00235 * 13 12 11 38 38 H 1.09000 * 109.46959 * 299.99809 * 14 13 12 39 39 H 1.08999 * 109.47292 * 59.99538 * 14 13 12 40 40 H 0.97007 * 119.99497 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4617 -0.1132 5 1 3.9006 0.6332 0.4128 6 6 3.8819 2.7856 0.5038 7 6 3.6022 2.7702 2.0079 8 6 3.8188 1.4239 -1.5676 9 7 3.2449 2.0727 -2.5364 10 8 3.7996 1.8337 -3.5883 11 6 4.8105 0.9837 -3.3844 12 6 5.7483 0.4372 -4.4299 13 6 5.1742 -0.8609 -5.0013 14 6 6.1266 -1.4161 -6.0623 15 6 5.5608 -2.6943 -6.6256 16 1 4.6167 -3.0730 -6.2628 17 6 6.2491 -3.3808 -7.6034 18 7 5.7557 -4.4965 -8.0945 19 14 7.8825 -2.7262 -8.2303 20 1 8.9873 -3.2843 -7.4098 21 1 8.0661 -3.1293 -9.6477 22 1 7.8925 -1.2445 -8.1319 23 7 4.8312 0.7168 -2.1008 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 4.9507 2.9166 0.3343 30 1 3.3371 3.6086 0.0413 31 1 4.0067 3.6749 2.4620 32 1 2.5263 2.7287 2.1770 33 1 4.0745 1.8962 2.4564 34 1 5.8641 1.1669 -5.2312 35 1 6.7195 0.2368 -3.9778 36 1 5.0583 -1.5907 -4.2000 37 1 4.2029 -0.6605 -5.4536 38 1 6.2428 -0.6865 -6.8637 39 1 7.0977 -1.6165 -5.6097 40 1 6.2398 -4.9793 -8.7827 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596621596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:54 Heat of formation + Delta-G solvation = -6.921443 kcal Electronic energy + Delta-G solvation = -20164.217237 eV Core-core repulsion = 16981.787510 eV Total energy + Delta-G solvation = -3182.429727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.48810 -38.90300 -35.99001 -35.25522 -34.01179 -32.78917 -31.44397 -31.04520 -28.26592 -27.37128 -24.31462 -23.53052 -23.04324 -22.22506 -20.81930 -20.31149 -17.91557 -17.64314 -17.11588 -16.68879 -16.09100 -15.05552 -14.90315 -14.69632 -14.38330 -14.23158 -13.89896 -12.96115 -12.82840 -12.70554 -12.53248 -12.49888 -12.38800 -11.79665 -11.76971 -11.70125 -11.57600 -11.34604 -11.19134 -11.09313 -10.91617 -10.82507 -10.18998 -10.08593 -10.02387 -9.83954 -9.54240 -9.25813 -8.58196 -6.08115 -4.07264 1.25765 2.22539 2.96436 3.19526 3.28272 3.36089 3.37830 3.60245 4.18501 4.41242 4.58874 4.64211 4.83521 4.91514 4.97867 5.15588 5.16359 5.19463 5.25164 5.37018 5.44063 5.46435 5.50447 5.60375 5.67212 5.70102 5.78976 5.89998 5.94183 5.98042 6.02725 6.32609 6.40477 6.71632 6.84442 7.16965 7.30202 7.72459 8.26340 8.48297 8.96265 9.53235 11.05296 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.003462 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.249521 B = 8086.438644 C = 8658.813033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.187 3.813 5 H 0.092 0.908 6 C -0.113 4.113 7 C -0.147 4.147 8 C 0.133 3.867 9 N -0.367 5.367 10 O 0.076 5.924 11 C 0.201 3.799 12 C -0.035 4.035 13 C -0.099 4.099 14 C -0.012 4.012 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 N -0.486 5.486 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.016 0.984 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 13.622 17.552 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.126 3.874 5 H 0.110 0.890 6 C -0.151 4.151 7 C -0.204 4.204 8 C -0.141 4.141 9 N -0.075 5.075 10 O 0.016 5.984 11 C -0.019 4.019 12 C -0.074 4.074 13 C -0.138 4.138 14 C -0.049 4.049 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 N -0.220 5.220 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.686 13.977 17.963 23.237 hybrid contribution 1.079 -0.187 -0.714 1.307 sum -3.607 13.790 17.248 22.376 Atomic orbital electron populations 1.21725 0.93279 1.02472 1.03133 1.22601 0.95977 0.83347 1.00469 1.88005 1.19612 1.27097 1.93516 1.20270 0.82592 1.00450 0.84051 0.89029 1.21582 1.01542 0.95309 0.96709 1.21704 1.02599 1.01900 0.94227 1.26496 0.92439 0.95038 1.00126 1.74614 1.18894 1.21543 0.92419 1.85323 1.35368 1.48797 1.28881 1.29246 0.90220 0.88935 0.93473 1.20654 0.94762 0.99337 0.92646 1.21553 1.00362 0.92352 0.99501 1.19572 0.94749 0.96946 0.93635 1.21086 1.08166 1.05920 1.20964 0.91031 1.25038 0.97789 0.94620 0.96050 1.69915 1.39229 1.16284 1.28680 0.86763 0.84315 0.79971 0.78139 1.20246 1.21390 1.18865 1.71899 1.20752 1.23643 1.05712 0.91786 0.91768 0.90869 0.93340 0.92779 0.90214 0.90468 0.92191 0.91740 0.92562 0.88216 0.87453 0.91821 0.91920 0.96106 0.96559 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.15 0.38 -0.99 16 2 C 0.05 0.57 6.45 37.15 0.24 0.81 16 3 O -0.36 -4.57 9.63 -35.23 -0.34 -4.91 16 4 C 0.19 2.25 2.65 -27.88 -0.07 2.18 16 5 H 0.09 1.00 7.89 -51.93 -0.41 0.59 16 6 C -0.11 -1.12 5.62 -26.73 -0.15 -1.27 16 7 C -0.15 -1.14 9.76 37.16 0.36 -0.78 16 8 C 0.13 2.00 6.82 -156.36 -1.07 0.93 16 9 N -0.37 -5.97 12.16 30.90 0.38 -5.59 16 10 O 0.08 1.21 11.31 18.10 0.20 1.41 16 11 C 0.20 3.08 7.77 -13.06 -0.10 2.98 16 12 C -0.03 -0.50 5.84 -27.88 -0.16 -0.66 16 13 C -0.10 -1.81 5.14 -26.73 -0.14 -1.95 16 14 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 15 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 19 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 23 N -0.49 -7.72 11.55 -9.87 -0.11 -7.84 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.61 7.95 -51.93 -0.41 0.19 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.53 7.96 -51.93 -0.41 0.11 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 39 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -31.52 338.90 -6.58 -38.10 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.66 Total: -3.72 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.25 Total: -12.17 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 1.04 Total: -40.16 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.13 Total: -3.50 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.52 -6.58 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596621596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.174 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds