Wall clock time and date at job start Mon Mar 30 2020 00:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46758 * 2 1 4 4 C 1.50698 * 109.47351 * 240.00174 * 2 1 3 5 5 H 1.08002 * 119.99686 * 239.99887 * 4 2 1 6 6 C 1.37870 * 120.00438 * 59.99365 * 4 2 1 7 7 N 1.31517 * 119.99830 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00248 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47303 * 60.00018 * 8 6 4 10 10 H 1.48499 * 109.47549 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47293 * 299.99910 * 8 6 4 12 12 C 1.52998 * 109.47267 * 119.99394 * 2 1 3 13 13 N 1.46502 * 109.47577 * 300.00570 * 12 2 1 14 14 C 1.34770 * 120.00247 * 179.97438 * 13 12 2 15 15 O 1.21351 * 120.00071 * 0.02562 * 14 13 12 16 16 C 1.49455 * 119.99938 * 179.97438 * 14 13 12 17 17 O 1.21351 * 119.99991 * 0.02562 * 16 14 13 18 18 N 1.34783 * 119.99760 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99531 * 180.02562 * 18 16 14 20 20 C 1.53781 * 113.61225 * 155.00207 * 19 18 16 21 21 C 1.53786 * 87.17350 * 139.93836 * 20 19 18 22 22 C 1.53782 * 113.61191 * 252.49880 * 19 18 16 23 23 H 1.09001 * 109.47370 * 299.99883 * 1 2 3 24 24 H 1.09003 * 109.47261 * 60.00286 * 1 2 3 25 25 H 1.09001 * 109.46668 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46770 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46662 * 299.99618 * 3 2 1 28 28 H 1.09001 * 109.47084 * 59.99942 * 3 2 1 29 29 H 0.97001 * 119.99983 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47319 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.46957 * 60.00568 * 12 2 1 32 32 H 0.97007 * 119.99672 * 359.97438 * 13 12 2 33 33 H 0.96997 * 119.99692 * 0.02562 * 18 16 14 34 34 H 1.08996 * 112.85385 * 23.80181 * 19 18 16 35 35 H 1.09002 * 113.61445 * 254.52836 * 20 19 18 36 36 H 1.09002 * 113.61408 * 25.34566 * 20 19 18 37 37 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 38 38 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 39 39 H 1.08997 * 113.61668 * 334.56642 * 22 19 18 40 40 H 1.08998 * 113.61674 * 105.39151 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8270 -0.4201 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8768 -0.4912 3.6695 15 8 2.5746 -1.4778 3.7809 16 6 1.3790 0.2137 4.8898 17 8 0.6817 1.2006 4.7784 18 7 1.7039 -0.2473 6.1140 19 6 1.2154 0.4433 7.3100 20 6 1.1248 -0.4617 8.5501 21 6 1.6603 0.7284 9.3637 22 6 2.3073 1.2262 8.0583 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 0.7088 1.1612 -3.4844 30 1 3.1301 -0.7207 1.2495 31 1 1.6768 -1.7488 1.2493 32 1 0.9942 0.7584 2.3564 33 1 2.2610 -1.0363 6.2029 34 1 0.3106 1.0221 7.1248 35 1 0.1049 -0.7449 8.8103 36 1 1.8058 -1.3122 8.5205 37 1 0.8779 1.3862 9.7418 38 1 2.3824 0.4443 10.1292 39 1 3.3126 0.8379 7.8951 40 1 2.2428 2.3055 7.9205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597343471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:40 Heat of formation + Delta-G solvation = -61.777009 kcal Electronic energy + Delta-G solvation = -20549.988478 eV Core-core repulsion = 17365.180036 eV Total energy + Delta-G solvation = -3184.808443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56225 -39.10824 -37.80271 -36.46922 -33.82053 -33.02313 -30.88776 -26.81824 -25.96921 -25.72067 -25.52077 -24.94229 -22.77302 -20.45462 -19.90682 -18.94705 -18.07768 -17.01285 -16.13419 -15.70548 -15.61714 -15.44668 -14.82743 -14.59745 -14.10995 -13.64464 -13.12479 -12.93231 -12.85767 -12.76911 -12.51081 -12.22187 -11.72217 -11.39556 -11.37857 -11.16625 -10.96954 -10.86219 -10.76961 -10.74065 -10.39658 -10.20204 -9.65008 -9.53540 -9.24866 -9.20670 -8.80963 -8.59761 -8.36872 -6.02565 -4.13569 1.65732 2.61745 3.29707 3.34393 3.37434 3.46727 3.95311 4.20432 4.30855 4.39196 4.56584 4.57608 4.81514 5.23940 5.31847 5.36242 5.37676 5.54834 5.67144 5.69818 5.94703 6.11589 6.23632 6.28642 6.47100 6.63487 6.82993 6.85271 6.94278 7.00508 7.14135 7.33489 7.55230 7.67296 7.73078 7.98375 8.00130 8.12910 8.32806 8.41620 8.86477 9.52334 10.98835 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052619 B = 0.003423 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.997070 B = 8176.892552 C = 8396.894288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.495 3.505 15 O -0.536 6.536 16 C 0.509 3.491 17 O -0.521 6.521 18 N -0.697 5.697 19 C 0.118 3.882 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.154 4.154 23 H 0.008 0.992 24 H 0.087 0.913 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.087 0.913 28 H 0.008 0.992 29 H 0.261 0.739 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.411 0.589 33 H 0.412 0.588 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 0.035 19.196 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 C -0.191 4.191 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.274 3.726 15 O -0.415 6.415 16 C 0.290 3.710 17 O -0.397 6.397 18 N -0.350 5.350 19 C 0.014 3.986 20 C -0.185 4.185 21 C -0.177 4.177 22 C -0.193 4.193 23 H 0.027 0.973 24 H 0.106 0.894 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.249 0.751 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.219 0.169 18.987 18.989 hybrid contribution 0.349 -0.468 -0.845 1.027 sum 0.568 -0.298 18.142 18.153 Atomic orbital electron populations 1.21859 0.97599 0.99283 1.00397 1.18373 0.92967 0.92853 0.90239 1.21860 0.98615 0.98263 1.00397 1.20919 1.31771 1.12216 0.89815 0.92397 1.24880 0.94815 0.94905 0.98865 1.69800 1.36440 1.22638 1.23411 0.86611 0.79209 0.79758 0.82133 1.20272 1.21313 1.20275 1.21948 0.98542 0.96045 0.82887 1.46229 1.50399 1.31352 1.05177 1.19999 0.82399 0.85233 0.84974 1.90720 1.37968 1.26005 1.86797 1.20543 0.80718 0.84598 0.85160 1.90744 1.36628 1.25419 1.86862 1.45789 1.52614 1.31939 1.04616 1.22702 0.98652 0.94936 0.82342 1.23338 1.02457 0.97718 0.94998 1.22714 1.00674 0.97762 0.96518 1.23481 0.99127 1.01083 0.95577 0.97268 0.89429 0.95349 0.95352 0.89426 0.97269 0.92874 0.92006 0.92000 0.75184 0.75127 0.86433 0.90571 0.89390 0.89724 0.90746 0.89559 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 4 C -0.51 -13.25 8.01 -34.44 -0.28 -13.53 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -23.66 9.35 55.43 0.52 -23.14 16 8 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 13 N -0.68 -12.77 4.95 -60.73 -0.30 -13.07 16 14 C 0.49 8.77 7.89 -11.59 -0.09 8.68 16 15 O -0.54 -10.33 16.48 5.50 0.09 -10.24 16 16 C 0.51 7.89 7.89 -11.58 -0.09 7.80 16 17 O -0.52 -9.11 16.08 5.50 0.09 -9.02 16 18 N -0.70 -8.28 5.35 -53.44 -0.29 -8.57 16 19 C 0.12 1.14 4.24 -67.12 -0.28 0.86 16 20 C -0.15 -1.03 7.83 -25.92 -0.20 -1.23 16 21 C -0.14 -0.87 8.10 -25.82 -0.21 -1.08 16 22 C -0.15 -1.26 7.88 -25.82 -0.20 -1.47 16 23 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 24 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 28 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.41 7.61 5.64 -40.82 -0.23 7.38 16 33 H 0.41 4.40 8.20 -40.82 -0.33 4.07 16 34 H 0.12 1.27 7.46 -51.93 -0.39 0.88 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -28.35 325.82 -7.01 -35.36 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.06 Total: 8.10 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.95 Total: 0.06 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.07 Total: -44.79 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.18 Total: -19.26 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.35 -7.01 -35.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597343471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.415 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds