Wall clock time and date at job start Mon Mar 30 2020 00:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46758 * 2 1 4 4 C 1.50698 * 109.47351 * 240.00174 * 2 1 3 5 5 H 1.08002 * 119.99686 * 239.99887 * 4 2 1 6 6 C 1.37870 * 120.00438 * 59.99365 * 4 2 1 7 7 N 1.31517 * 119.99830 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00248 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47303 * 60.00018 * 8 6 4 10 10 H 1.48499 * 109.47549 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47293 * 299.99910 * 8 6 4 12 12 C 1.52998 * 109.47267 * 119.99394 * 2 1 3 13 13 N 1.46502 * 109.47577 * 300.00570 * 12 2 1 14 14 C 1.34770 * 120.00247 * 179.97438 * 13 12 2 15 15 O 1.21351 * 120.00071 * 0.02562 * 14 13 12 16 16 C 1.49455 * 119.99938 * 179.97438 * 14 13 12 17 17 O 1.21351 * 119.99991 * 0.02562 * 16 14 13 18 18 N 1.34783 * 119.99760 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99531 * 180.02562 * 18 16 14 20 20 C 1.53781 * 113.61225 * 155.00207 * 19 18 16 21 21 C 1.53786 * 87.17350 * 139.93836 * 20 19 18 22 22 C 1.53782 * 113.61191 * 252.49880 * 19 18 16 23 23 H 1.09001 * 109.47370 * 299.99883 * 1 2 3 24 24 H 1.09003 * 109.47261 * 60.00286 * 1 2 3 25 25 H 1.09001 * 109.46668 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46770 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46662 * 299.99618 * 3 2 1 28 28 H 1.09001 * 109.47084 * 59.99942 * 3 2 1 29 29 H 0.97001 * 119.99983 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47319 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.46957 * 60.00568 * 12 2 1 32 32 H 0.97007 * 119.99672 * 359.97438 * 13 12 2 33 33 H 0.96997 * 119.99692 * 0.02562 * 18 16 14 34 34 H 1.08996 * 112.85385 * 23.80181 * 19 18 16 35 35 H 1.09002 * 113.61445 * 254.52836 * 20 19 18 36 36 H 1.09002 * 113.61408 * 25.34566 * 20 19 18 37 37 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 38 38 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 39 39 H 1.08997 * 113.61668 * 334.56642 * 22 19 18 40 40 H 1.08998 * 113.61674 * 105.39151 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8270 -0.4201 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8768 -0.4912 3.6695 15 8 2.5746 -1.4778 3.7809 16 6 1.3790 0.2137 4.8898 17 8 0.6817 1.2006 4.7784 18 7 1.7039 -0.2473 6.1140 19 6 1.2154 0.4433 7.3100 20 6 1.1248 -0.4617 8.5501 21 6 1.6603 0.7284 9.3637 22 6 2.3073 1.2262 8.0583 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 0.7088 1.1612 -3.4844 30 1 3.1301 -0.7207 1.2495 31 1 1.6768 -1.7488 1.2493 32 1 0.9942 0.7584 2.3564 33 1 2.2610 -1.0363 6.2029 34 1 0.3106 1.0221 7.1248 35 1 0.1049 -0.7449 8.8103 36 1 1.8058 -1.3122 8.5205 37 1 0.8779 1.3862 9.7418 38 1 2.3824 0.4443 10.1292 39 1 3.3126 0.8379 7.8951 40 1 2.2428 2.3055 7.9205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597343471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:40 Heat of formation + Delta-G solvation = -80.243016 kcal Electronic energy + Delta-G solvation = -20550.789225 eV Core-core repulsion = 17365.180036 eV Total energy + Delta-G solvation = -3185.609189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.79336 -40.21471 -38.91820 -38.20131 -35.28855 -34.32525 -32.74978 -28.22060 -27.59759 -27.31453 -26.57430 -26.28692 -23.99030 -21.57454 -20.93201 -20.66062 -19.35831 -18.16032 -17.80481 -17.07079 -16.98526 -16.64930 -16.23494 -15.98538 -15.48114 -15.14058 -14.76912 -14.42178 -14.06553 -13.85593 -13.44695 -13.32539 -13.21311 -13.13132 -12.81896 -12.68778 -12.62293 -12.28142 -12.23890 -12.12026 -11.59329 -11.51487 -11.38068 -11.30927 -10.77253 -10.61661 -10.41232 -10.22478 -10.11756 -8.01799 -6.18677 0.33310 1.37470 1.46136 1.47516 1.54051 2.13062 2.45520 2.73768 3.22026 3.45345 3.57459 3.69050 3.94908 3.95710 4.33658 4.46222 4.60811 4.66795 4.79433 4.82267 4.91413 5.02293 5.02853 5.04992 5.05819 5.10690 5.16144 5.19550 5.20704 5.46636 5.52572 5.63816 5.66828 5.97825 6.10259 6.18109 6.39366 6.41218 6.74565 6.85847 6.96128 7.49454 8.97366 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052619 B = 0.003423 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.997070 B = 8176.892552 C = 8396.894288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.051 3.949 3 C -0.124 4.124 4 C -0.529 4.529 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.902 5.902 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.496 3.504 15 O -0.551 6.551 16 C 0.513 3.487 17 O -0.545 6.545 18 N -0.678 5.678 19 C 0.101 3.899 20 C -0.137 4.137 21 C -0.127 4.127 22 C -0.155 4.155 23 H 0.029 0.971 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.413 0.587 33 H 0.419 0.581 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 -0.373 20.964 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.567 4.567 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.277 3.723 15 O -0.431 6.431 16 C 0.293 3.707 17 O -0.422 6.422 18 N -0.330 5.330 19 C -0.002 4.002 20 C -0.175 4.175 21 C -0.165 4.165 22 C -0.193 4.193 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.251 0.749 33 H 0.257 0.743 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.488 -0.252 20.802 20.810 hybrid contribution 0.282 -0.349 -1.320 1.394 sum 0.769 -0.601 19.482 19.506 Atomic orbital electron populations 1.21710 0.97365 0.98903 1.00205 1.18370 0.93132 0.92981 0.90484 1.21711 0.98214 0.98051 1.00201 1.21231 1.31924 1.12370 0.91201 0.92986 1.25500 0.95082 0.95559 1.01172 1.69921 1.36963 1.23386 1.23730 0.85759 0.78655 0.78771 0.79277 1.20064 1.21091 1.20079 1.21560 0.97931 0.95514 0.83023 1.46084 1.50756 1.31424 1.05067 1.20394 0.81688 0.84899 0.85332 1.90708 1.38543 1.26701 1.87112 1.20086 0.80877 0.84317 0.85378 1.90741 1.38009 1.26392 1.87063 1.45838 1.51419 1.31681 1.04086 1.23050 0.98886 0.96248 0.82047 1.23341 1.03369 0.97907 0.92910 1.22699 1.00863 0.97128 0.95825 1.23500 0.98809 1.00559 0.96469 0.95205 0.91758 0.95751 0.95769 0.91755 0.95214 0.93019 0.92714 0.92692 0.74933 0.74282 0.87638 0.89771 0.88360 0.88948 0.89239 0.89314 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 4 C -0.53 -27.66 8.01 25.60 0.21 -27.45 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 6 C 0.03 1.40 5.15 84.65 0.44 1.84 16 7 N -0.90 -48.55 9.35 21.45 0.20 -48.35 16 8 Si 0.95 42.30 29.54 68.60 2.03 44.32 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 C 0.14 5.97 4.50 86.38 0.39 6.36 16 13 N -0.68 -25.13 4.95 -464.41 -2.30 -27.43 16 14 C 0.50 17.17 7.89 87.27 0.69 17.86 16 15 O -0.55 -20.73 16.48 -3.25 -0.05 -20.78 16 16 C 0.51 15.39 7.89 87.27 0.69 16.08 16 17 O -0.54 -18.60 16.08 -3.25 -0.05 -18.65 16 18 N -0.68 -15.07 5.35 -441.36 -2.36 -17.43 16 19 C 0.10 1.78 4.24 45.52 0.19 1.98 16 20 C -0.14 -1.54 7.83 31.12 0.24 -1.30 16 21 C -0.13 -1.23 8.10 31.18 0.25 -0.98 16 22 C -0.15 -2.24 7.88 31.18 0.25 -1.99 16 23 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 24 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 25 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 28 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 29 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 30 H 0.05 2.35 8.14 -2.39 -0.02 2.34 16 31 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.41 14.92 5.64 -92.70 -0.52 14.40 16 33 H 0.42 8.17 8.20 -92.71 -0.76 7.41 16 34 H 0.11 2.16 7.46 -2.39 -0.02 2.14 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.94 8.12 -2.39 -0.02 0.92 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -59.61 325.82 1.71 -57.90 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -0.23 Total: 25.88 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 4.48 Total: 4.53 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -4.46 Total: -93.21 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.11 Total: -39.43 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -59.61 1.71 -57.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597343471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.340 kcal (2) G-P(sol) polarization free energy of solvation -59.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds