Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46918 * 2 1 4 4 H 1.09001 * 109.46857 * 305.79658 * 3 2 1 5 5 C 1.50707 * 109.46886 * 185.80387 * 3 2 1 6 6 H 1.07996 * 119.99984 * 335.24629 * 5 3 2 7 7 C 1.37876 * 119.99635 * 155.24854 * 5 3 2 8 8 N 1.31511 * 120.00449 * 355.46482 * 7 5 3 9 9 Si 1.86801 * 119.99672 * 175.47059 * 7 5 3 10 10 H 1.48496 * 109.47468 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47193 * 239.99627 * 9 7 5 12 12 H 1.48504 * 109.47195 * 119.99912 * 9 7 5 13 13 N 1.46496 * 109.47752 * 65.80049 * 3 2 1 14 14 C 1.34778 * 119.99852 * 275.00377 * 13 3 2 15 15 O 1.21280 * 120.00135 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99885 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.47311 * 185.88213 * 16 14 13 18 18 H 1.09000 * 110.21322 * 304.29908 * 17 16 14 19 19 C 1.54481 * 110.24190 * 66.22126 * 17 16 14 20 20 C 1.54632 * 101.76155 * 93.58932 * 19 17 16 21 21 C 1.51279 * 104.19615 * 24.79542 * 20 19 17 22 22 O 1.21282 * 124.94180 * 163.78965 * 21 20 19 23 23 N 1.34414 * 110.11738 * 343.74855 * 21 20 19 24 24 C 1.46501 * 124.35075 * 179.59413 * 23 21 20 25 25 H 1.09003 * 109.47062 * 300.00308 * 1 2 3 26 26 H 1.08993 * 109.47327 * 60.00466 * 1 2 3 27 27 H 1.09004 * 109.46653 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47339 * 239.99615 * 2 1 3 29 29 H 1.09005 * 109.46966 * 119.99361 * 2 1 3 30 30 H 0.96997 * 120.00167 * 5.36880 * 8 7 5 31 31 H 0.97005 * 119.99889 * 94.99384 * 13 3 2 32 32 H 1.09001 * 109.47129 * 305.88671 * 16 14 13 33 33 H 1.09003 * 109.47028 * 65.88138 * 16 14 13 34 34 H 1.09001 * 110.96692 * 211.69915 * 19 17 16 35 35 H 1.08999 * 110.97525 * 335.43394 * 19 17 16 36 36 H 1.08996 * 110.48662 * 143.47472 * 20 19 17 37 37 H 1.09005 * 110.48477 * 266.12120 * 20 19 17 38 38 H 1.09000 * 109.47062 * 275.08228 * 24 23 21 39 39 H 1.08996 * 109.47327 * 35.08312 * 24 23 21 40 40 H 1.09005 * 109.46981 * 155.08095 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5943 1.9854 -0.8336 5 6 3.5401 1.4449 -0.1437 6 1 4.1136 0.5837 0.1658 7 6 4.1804 2.5466 -0.6702 8 7 3.4773 3.5588 -1.1293 9 14 6.0466 2.6015 -0.7317 10 1 6.5979 1.3484 -0.1566 11 1 6.5338 3.7630 0.0551 12 1 6.4917 2.7373 -2.1419 13 7 1.6690 2.0917 1.2598 14 6 0.4533 2.6580 1.3935 15 8 -0.3334 2.6305 0.4709 16 6 0.0714 3.3254 2.6897 17 6 -1.3965 3.7524 2.6304 18 1 -1.5680 4.3921 1.7646 19 6 -2.3124 2.5100 2.5668 20 6 -2.6442 2.2863 4.0604 21 6 -2.4688 3.6515 4.6880 22 8 -2.8943 3.9755 5.7765 23 7 -1.7720 4.4530 3.8641 24 6 -1.4311 5.8468 4.1597 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5128 3.5653 -1.0272 31 1 2.2983 2.1139 1.9976 32 1 0.2135 2.6264 3.5139 33 1 0.6991 4.2029 2.8452 34 1 -3.2156 2.7202 1.9939 35 1 -1.7803 1.6538 2.1523 36 1 -3.6722 1.9427 4.1755 37 1 -1.9502 1.5713 4.5024 38 1 -2.2614 6.4924 3.8737 39 1 -1.2375 5.9551 5.2268 40 1 -0.5406 6.1299 3.5984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597509240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = -90.340687 kcal Electronic energy + Delta-G solvation = -21374.030059 eV Core-core repulsion = 18187.983002 eV Total energy + Delta-G solvation = -3186.047057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66677 -38.96626 -36.64118 -35.17650 -32.82730 -32.30576 -31.76374 -30.18931 -26.83328 -26.66803 -25.27772 -23.14127 -21.72752 -20.38570 -19.45373 -19.28410 -17.49016 -16.84478 -16.32462 -16.04014 -15.29644 -14.92499 -14.84378 -14.00568 -13.86365 -13.67489 -13.58445 -13.05307 -12.96742 -12.89828 -12.56405 -12.35264 -12.27202 -12.11643 -11.80771 -11.12119 -10.94260 -10.88846 -10.85812 -10.76273 -10.38945 -10.25556 -9.88880 -9.82670 -9.25186 -8.95806 -8.68149 -8.52524 -7.83012 -6.60019 -4.40967 2.54157 2.92831 3.32152 3.32472 3.39239 3.47996 4.09201 4.33575 4.40445 4.49578 4.76589 4.95732 5.16162 5.18697 5.21886 5.34983 5.46211 5.54965 5.61438 5.68919 5.77112 5.82332 5.92160 5.96031 6.06388 6.09305 6.21285 6.48309 6.63139 6.78163 6.89990 7.01673 7.06134 7.26151 7.60412 7.84300 8.12546 8.21267 8.55557 8.72197 9.12966 9.39239 10.77154 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.004948 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.576521 B = 5657.509961 C = 6329.970508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.610 4.610 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.891 5.891 9 Si 1.073 2.927 10 H -0.287 1.287 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.702 5.702 14 C 0.500 3.500 15 O -0.557 6.557 16 C -0.157 4.157 17 C 0.149 3.851 18 H 0.098 0.902 19 C -0.117 4.117 20 C -0.158 4.158 21 C 0.516 3.484 22 O -0.542 6.542 23 N -0.618 5.618 24 C 0.095 3.905 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.278 0.722 31 H 0.386 0.614 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 -0.575 7.929 10.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.141 3.859 4 H 0.073 0.927 5 C -0.648 4.648 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.525 5.525 9 Si 0.901 3.099 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.351 5.351 14 C 0.285 3.715 15 O -0.438 6.438 16 C -0.199 4.199 17 C 0.045 3.955 18 H 0.116 0.884 19 C -0.155 4.155 20 C -0.198 4.198 21 C 0.305 3.695 22 O -0.420 6.420 23 N -0.351 5.351 24 C -0.047 4.047 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.219 0.781 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.696 0.559 7.300 9.922 hybrid contribution -0.773 -0.766 0.930 1.431 sum -7.469 -0.207 8.231 11.116 Atomic orbital electron populations 1.21866 0.97045 0.98621 1.02276 1.21820 0.94236 0.99165 1.00456 1.18914 0.95117 0.88625 0.83209 0.92713 1.22177 0.91159 1.04134 1.47363 0.92530 1.25990 1.07175 0.92535 0.92015 1.70698 1.09751 1.32429 1.39641 0.83488 0.73814 0.75611 0.76991 1.21280 1.21247 1.21078 1.47653 1.13673 1.55272 1.18479 1.20293 0.83331 0.79421 0.88497 1.90645 1.50959 1.60603 1.41547 1.22102 0.97108 1.02257 0.98393 1.21394 0.93154 0.94387 0.86571 0.88360 1.22594 1.00170 0.98225 0.94525 1.22398 1.04718 0.95663 0.97057 1.20980 0.76923 0.87544 0.84090 1.90695 1.51363 1.79323 1.20621 1.48314 1.54531 1.12258 1.20034 1.21546 1.00804 0.80371 1.02011 0.93032 0.92869 0.95327 0.92403 0.93738 0.91058 0.78116 0.89566 0.89109 0.89888 0.88490 0.88173 0.87967 0.92558 0.91038 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.53 37.16 0.32 -2.27 16 2 C -0.12 -2.40 5.58 -26.73 -0.15 -2.55 16 3 C 0.24 5.56 1.95 -69.08 -0.13 5.42 16 4 H 0.06 1.47 6.12 -51.93 -0.32 1.15 16 5 C -0.61 -15.40 8.50 -34.44 -0.29 -15.69 16 6 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 7 C 0.03 0.83 5.46 -17.82 -0.10 0.73 16 8 N -0.89 -25.17 13.62 55.43 0.76 -24.42 16 9 Si 1.07 23.17 29.91 -169.99 -5.08 18.09 16 10 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.70 -13.85 5.03 -54.93 -0.28 -14.12 16 14 C 0.50 8.99 5.76 -10.98 -0.06 8.92 16 15 O -0.56 -11.35 12.06 5.56 0.07 -11.29 16 16 C -0.16 -2.14 5.52 -27.88 -0.15 -2.30 16 17 C 0.15 1.91 2.73 -67.01 -0.18 1.72 16 18 H 0.10 1.35 7.92 -51.93 -0.41 0.94 16 19 C -0.12 -1.39 6.11 -25.10 -0.15 -1.54 16 20 C -0.16 -1.75 6.86 -26.74 -0.18 -1.93 16 21 C 0.52 7.21 8.02 -10.86 -0.09 7.12 16 22 O -0.54 -9.40 17.66 5.56 0.10 -9.31 16 23 N -0.62 -7.78 2.97 -172.71 -0.51 -8.30 16 24 C 0.09 1.01 10.92 59.85 0.65 1.66 16 25 H 0.05 0.93 4.92 -51.93 -0.26 0.67 16 26 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.28 8.01 6.67 -40.82 -0.27 7.74 16 31 H 0.39 7.07 8.59 -40.82 -0.35 6.72 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.26 6.06 -51.93 -0.31 0.94 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 40 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -30.39 323.95 -6.78 -37.17 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.18 Total: 7.97 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.53 Total: -0.69 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.03 Total: -46.84 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.17 Total: -20.59 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.08 Total: 18.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.39 -6.78 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.168 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds