Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46918 * 2 1 4 4 H 1.09001 * 109.46857 * 305.79658 * 3 2 1 5 5 C 1.50707 * 109.46886 * 185.80387 * 3 2 1 6 6 H 1.07996 * 119.99984 * 335.24629 * 5 3 2 7 7 C 1.37876 * 119.99635 * 155.24854 * 5 3 2 8 8 N 1.31511 * 120.00449 * 355.46482 * 7 5 3 9 9 Si 1.86801 * 119.99672 * 175.47059 * 7 5 3 10 10 H 1.48496 * 109.47468 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47193 * 239.99627 * 9 7 5 12 12 H 1.48504 * 109.47195 * 119.99912 * 9 7 5 13 13 N 1.46496 * 109.47752 * 65.80049 * 3 2 1 14 14 C 1.34778 * 119.99852 * 275.00377 * 13 3 2 15 15 O 1.21280 * 120.00135 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99885 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.47311 * 185.88213 * 16 14 13 18 18 H 1.09000 * 110.21322 * 304.29908 * 17 16 14 19 19 C 1.54481 * 110.24190 * 66.22126 * 17 16 14 20 20 C 1.54632 * 101.76155 * 93.58932 * 19 17 16 21 21 C 1.51279 * 104.19615 * 24.79542 * 20 19 17 22 22 O 1.21282 * 124.94180 * 163.78965 * 21 20 19 23 23 N 1.34414 * 110.11738 * 343.74855 * 21 20 19 24 24 C 1.46501 * 124.35075 * 179.59413 * 23 21 20 25 25 H 1.09003 * 109.47062 * 300.00308 * 1 2 3 26 26 H 1.08993 * 109.47327 * 60.00466 * 1 2 3 27 27 H 1.09004 * 109.46653 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47339 * 239.99615 * 2 1 3 29 29 H 1.09005 * 109.46966 * 119.99361 * 2 1 3 30 30 H 0.96997 * 120.00167 * 5.36880 * 8 7 5 31 31 H 0.97005 * 119.99889 * 94.99384 * 13 3 2 32 32 H 1.09001 * 109.47129 * 305.88671 * 16 14 13 33 33 H 1.09003 * 109.47028 * 65.88138 * 16 14 13 34 34 H 1.09001 * 110.96692 * 211.69915 * 19 17 16 35 35 H 1.08999 * 110.97525 * 335.43394 * 19 17 16 36 36 H 1.08996 * 110.48662 * 143.47472 * 20 19 17 37 37 H 1.09005 * 110.48477 * 266.12120 * 20 19 17 38 38 H 1.09000 * 109.47062 * 275.08228 * 24 23 21 39 39 H 1.08996 * 109.47327 * 35.08312 * 24 23 21 40 40 H 1.09005 * 109.46981 * 155.08095 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5943 1.9854 -0.8336 5 6 3.5401 1.4449 -0.1437 6 1 4.1136 0.5837 0.1658 7 6 4.1804 2.5466 -0.6702 8 7 3.4773 3.5588 -1.1293 9 14 6.0466 2.6015 -0.7317 10 1 6.5979 1.3484 -0.1566 11 1 6.5338 3.7630 0.0551 12 1 6.4917 2.7373 -2.1419 13 7 1.6690 2.0917 1.2598 14 6 0.4533 2.6580 1.3935 15 8 -0.3334 2.6305 0.4709 16 6 0.0714 3.3254 2.6897 17 6 -1.3965 3.7524 2.6304 18 1 -1.5680 4.3921 1.7646 19 6 -2.3124 2.5100 2.5668 20 6 -2.6442 2.2863 4.0604 21 6 -2.4688 3.6515 4.6880 22 8 -2.8943 3.9755 5.7765 23 7 -1.7720 4.4530 3.8641 24 6 -1.4311 5.8468 4.1597 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5128 3.5653 -1.0272 31 1 2.2983 2.1139 1.9976 32 1 0.2135 2.6264 3.5139 33 1 0.6991 4.2029 2.8452 34 1 -3.2156 2.7202 1.9939 35 1 -1.7803 1.6538 2.1523 36 1 -3.6722 1.9427 4.1755 37 1 -1.9502 1.5713 4.5024 38 1 -2.2614 6.4924 3.8737 39 1 -1.2375 5.9551 5.2268 40 1 -0.5406 6.1299 3.5984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597509240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = -110.372778 kcal Electronic energy + Delta-G solvation = -21374.898715 eV Core-core repulsion = 18187.983002 eV Total energy + Delta-G solvation = -3186.915713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.77572 -40.44145 -37.87393 -36.84369 -34.19326 -33.77920 -33.28511 -31.42483 -28.55137 -27.59484 -26.47979 -24.94449 -22.88321 -21.93408 -20.95244 -20.36514 -19.26107 -18.03798 -17.56400 -17.27686 -16.61758 -16.38631 -16.14529 -15.63817 -15.27485 -15.00619 -14.78800 -14.52393 -14.32122 -14.12072 -13.86794 -13.73037 -13.29423 -13.13614 -12.99566 -12.81926 -12.60396 -12.45691 -12.07919 -11.90796 -11.89100 -11.85017 -11.56438 -11.01949 -10.93782 -10.54110 -10.49088 -9.82686 -9.49270 -8.66269 -6.47141 1.47426 1.57678 1.62300 1.80798 1.91079 1.93236 2.54222 2.67519 3.26115 3.40923 3.52773 3.71158 3.99209 4.10643 4.26349 4.33039 4.33875 4.40968 4.43507 4.52908 4.61143 4.63297 4.73112 4.81464 4.88520 4.95454 5.09697 5.10758 5.14782 5.25591 5.37199 5.48242 5.56855 5.82124 6.03471 6.07548 6.17936 6.51984 7.06972 7.08301 7.40767 7.62190 8.69929 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.004948 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.576521 B = 5657.509961 C = 6329.970508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.114 4.114 3 C 0.246 3.754 4 H 0.010 0.990 5 C -0.615 4.615 6 H 0.057 0.943 7 C -0.015 4.015 8 N -0.924 5.924 9 Si 1.119 2.881 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.705 5.705 14 C 0.500 3.500 15 O -0.581 6.581 16 C -0.143 4.143 17 C 0.152 3.848 18 H 0.088 0.912 19 C -0.113 4.113 20 C -0.148 4.148 21 C 0.510 3.490 22 O -0.581 6.581 23 N -0.614 5.614 24 C 0.088 3.912 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.260 0.740 31 H 0.395 0.605 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.998 -1.411 9.203 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.153 4.153 3 C 0.144 3.856 4 H 0.028 0.972 5 C -0.653 4.653 6 H 0.076 0.924 7 C -0.216 4.216 8 N -0.559 5.559 9 Si 0.941 3.059 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.354 5.354 14 C 0.287 3.713 15 O -0.463 6.463 16 C -0.184 4.184 17 C 0.048 3.952 18 H 0.106 0.894 19 C -0.150 4.150 20 C -0.188 4.188 21 C 0.300 3.700 22 O -0.461 6.461 23 N -0.346 5.346 24 C -0.053 4.053 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.229 0.771 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.475 -0.283 8.584 10.756 hybrid contribution -0.898 -0.518 0.516 1.158 sum -7.374 -0.801 9.101 11.740 Atomic orbital electron populations 1.21732 0.95440 1.00109 1.01384 1.21746 0.95630 0.97250 1.00666 1.18613 0.93909 0.89823 0.83208 0.97178 1.22456 0.92399 1.03828 1.46626 0.92434 1.27282 1.10761 0.92199 0.91394 1.70837 1.08767 1.33941 1.42401 0.82900 0.69353 0.76592 0.77018 1.19172 1.20624 1.21220 1.47175 1.14796 1.55915 1.17553 1.20851 0.82202 0.78569 0.89690 1.90643 1.51506 1.61154 1.42957 1.21985 0.97720 1.02575 0.96124 1.21308 0.92837 0.94817 0.86274 0.89384 1.22543 1.00043 0.97231 0.95217 1.22408 1.06207 0.94290 0.95863 1.21441 0.76352 0.88613 0.83617 1.90678 1.52988 1.80199 1.22277 1.48388 1.53851 1.12823 1.19573 1.21712 1.01788 0.79630 1.02214 0.92654 0.95015 0.92560 0.93239 0.92346 0.92914 0.77081 0.87328 0.88209 0.89296 0.89289 0.86567 0.86400 0.91767 0.91164 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 8.53 71.98 0.61 -3.99 16 2 C -0.11 -4.54 5.58 30.59 0.17 -4.37 16 3 C 0.25 11.43 1.95 44.25 0.09 11.51 16 4 H 0.01 0.57 6.12 -2.39 -0.01 0.55 16 5 C -0.61 -30.99 8.50 25.60 0.22 -30.77 16 6 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 7 C -0.01 -0.76 5.46 84.65 0.46 -0.30 16 8 N -0.92 -53.26 13.62 21.45 0.29 -52.97 16 9 Si 1.12 46.15 29.91 68.60 2.05 48.20 16 10 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 11 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 12 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.71 -27.38 5.03 -446.09 -2.24 -29.62 16 14 C 0.50 17.54 5.76 87.66 0.50 18.05 16 15 O -0.58 -23.64 12.06 -3.03 -0.04 -23.67 16 16 C -0.14 -3.60 5.52 29.85 0.16 -3.44 16 17 C 0.15 3.62 2.73 45.44 0.12 3.74 16 18 H 0.09 2.33 7.92 -2.39 -0.02 2.31 16 19 C -0.11 -2.42 6.11 31.65 0.19 -2.23 16 20 C -0.15 -2.87 6.86 30.59 0.21 -2.66 16 21 C 0.51 13.30 8.02 87.90 0.71 14.01 16 22 O -0.58 -19.48 17.66 -3.04 -0.05 -19.54 16 23 N -0.61 -14.35 2.97 -818.91 -2.44 -16.78 16 24 C 0.09 1.74 10.92 127.77 1.40 3.14 16 25 H 0.05 1.91 4.92 -2.39 -0.01 1.89 16 26 H 0.03 1.24 7.89 -2.39 -0.02 1.22 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.26 15.59 6.67 -92.71 -0.62 14.97 16 31 H 0.40 13.99 8.59 -92.70 -0.80 13.19 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.11 6.06 -2.39 -0.01 2.09 16 36 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.42 8.03 -2.39 -0.02 1.41 16 40 H 0.09 1.51 8.13 -2.38 -0.02 1.49 16 Total: -1.00 -66.27 323.95 2.81 -63.46 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.39 Total: 28.24 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 4.85 Total: 2.69 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -4.39 Total: -99.38 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.09 Total: -43.21 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.05 Total: 48.20 kcal Total: -66.27 2.81 -63.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.914 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds