Wall clock time and date at job start Mon Mar 30 2020 01:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47165 * 2 1 4 4 H 1.08997 * 109.47394 * 54.99431 * 3 2 1 5 5 C 1.50701 * 109.46827 * 174.99703 * 3 2 1 6 6 H 1.08005 * 119.99945 * 119.99895 * 5 3 2 7 7 C 1.37873 * 120.00426 * 299.99361 * 5 3 2 8 8 N 1.31512 * 119.99775 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00394 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47149 * 90.00211 * 9 7 5 11 11 H 1.48502 * 109.47486 * 210.00395 * 9 7 5 12 12 H 1.48501 * 109.47128 * 330.00071 * 9 7 5 13 13 N 1.46504 * 109.46728 * 294.99222 * 3 2 1 14 14 C 1.34780 * 119.99596 * 85.00313 * 13 3 2 15 15 O 1.21278 * 119.99899 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00019 * 179.97438 * 14 13 3 17 17 C 1.52995 * 109.47353 * 173.99969 * 16 14 13 18 18 H 1.08997 * 110.21861 * 55.86021 * 17 16 14 19 19 C 1.54483 * 110.24488 * 293.93247 * 17 16 14 20 20 C 1.54622 * 101.76470 * 266.41442 * 19 17 16 21 21 C 1.51281 * 104.19697 * 335.20101 * 20 19 17 22 22 O 1.21280 * 124.94454 * 195.98648 * 21 20 19 23 23 N 1.34422 * 110.11485 * 16.25434 * 21 20 19 24 24 C 1.46500 * 124.34956 * 180.40841 * 23 21 20 25 25 H 1.08996 * 109.47653 * 300.00657 * 1 2 3 26 26 H 1.09001 * 109.47128 * 60.00402 * 1 2 3 27 27 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47653 * 239.99343 * 2 1 3 29 29 H 1.09001 * 109.47128 * 119.99598 * 2 1 3 30 30 H 0.97001 * 120.00047 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99986 * 265.00342 * 13 3 2 32 32 H 1.09005 * 109.46923 * 53.99911 * 16 14 13 33 33 H 1.08994 * 109.47431 * 294.00302 * 16 14 13 34 34 H 1.08999 * 110.96892 * 148.29561 * 19 17 16 35 35 H 1.08993 * 111.00326 * 24.54734 * 19 17 16 36 36 H 1.09001 * 110.48570 * 216.52438 * 20 19 17 37 37 H 1.09004 * 110.48985 * 93.88303 * 20 19 17 38 38 H 1.08997 * 109.46876 * 5.21707 * 24 23 21 39 39 H 1.09000 * 109.47261 * 125.21853 * 24 23 21 40 40 H 1.09002 * 109.46788 * 245.21966 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9817 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3369 2.1730 9 14 6.0048 0.8813 1.3820 10 1 6.4415 2.1142 2.0850 11 1 6.4394 -0.3098 2.1552 12 1 6.6135 0.8415 0.0280 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3672 15 8 -0.3392 2.6327 -0.4343 16 6 0.0367 3.3385 -2.6547 17 6 -1.4312 3.7624 -2.5754 18 1 -1.5929 4.3991 -1.7056 19 6 -2.3439 2.5181 -2.5043 20 6 -2.6941 2.2984 -3.9942 21 6 -2.5292 3.6659 -4.6197 22 8 -2.9657 3.9914 -5.7034 23 7 -1.8235 4.4662 -3.8021 24 6 -1.4890 5.8616 -4.0975 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0615 2.9497 31 1 2.2720 2.1230 -1.9978 32 1 0.1702 2.6444 -3.4846 33 1 0.6609 4.2179 -2.8127 34 1 -3.2401 2.7247 -1.9193 35 1 -1.8053 1.6612 -2.0997 36 1 -3.7228 1.9532 -4.0974 37 1 -2.0045 1.5860 -4.4472 38 1 -1.9764 6.1635 -5.0246 39 1 -1.8329 6.4981 -3.2822 40 1 -0.4090 5.9612 -4.2056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597509241.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:01 Heat of formation + Delta-G solvation = -82.209894 kcal Electronic energy + Delta-G solvation = -21193.595147 eV Core-core repulsion = 18007.900668 eV Total energy + Delta-G solvation = -3185.694479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70697 -39.00417 -36.65093 -35.07250 -32.85842 -32.46130 -31.34608 -30.16228 -27.11823 -26.71027 -25.35631 -23.10470 -21.69400 -20.22519 -19.38863 -19.32751 -17.32444 -16.68158 -16.33726 -15.84691 -15.28578 -15.20180 -14.91531 -14.30171 -13.88419 -13.62277 -13.54861 -12.96149 -12.81220 -12.70127 -12.49388 -12.30640 -12.21829 -11.80901 -11.48871 -11.29829 -11.02143 -10.94807 -10.91341 -10.82628 -10.35941 -10.21790 -9.88154 -9.66909 -9.17241 -9.08792 -8.77418 -8.54020 -7.88442 -6.16942 -4.26502 2.50932 2.88635 3.21060 3.28187 3.29204 3.31852 4.02591 4.29067 4.41521 4.47189 4.73472 4.93328 5.13221 5.14633 5.17091 5.28458 5.39233 5.50220 5.56119 5.64702 5.68702 5.80268 6.02365 6.04093 6.33880 6.41694 6.44385 6.60321 6.98258 7.01941 7.14111 7.31111 7.39177 7.56852 7.67853 7.85151 8.09173 8.13614 8.60551 8.72365 9.06230 9.41185 10.88259 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034333 B = 0.004263 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.336999 B = 6567.247686 C = 7003.386987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.504 3.496 15 O -0.547 6.547 16 C -0.155 4.155 17 C 0.149 3.851 18 H 0.099 0.901 19 C -0.119 4.119 20 C -0.159 4.159 21 C 0.517 3.483 22 O -0.543 6.543 23 N -0.619 5.619 24 C 0.091 3.909 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.022 0.978 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 5.042 -9.280 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.288 3.712 15 O -0.427 6.427 16 C -0.197 4.197 17 C 0.045 3.955 18 H 0.117 0.883 19 C -0.157 4.157 20 C -0.199 4.199 21 C 0.306 3.694 22 O -0.420 6.420 23 N -0.352 5.352 24 C -0.050 4.050 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.181 5.172 -8.991 13.211 hybrid contribution 1.539 0.026 -0.201 1.553 sum -6.642 5.198 -9.192 12.476 Atomic orbital electron populations 1.21847 0.98330 0.98041 1.01169 1.21934 0.92649 0.99824 1.02294 1.18785 0.94172 0.89179 0.81000 0.93264 1.21234 0.90786 1.39105 1.06288 0.92157 1.24874 0.98572 0.94762 0.95396 1.69886 1.35145 1.37535 1.09336 0.86471 0.84893 0.77673 0.78201 1.20575 1.21056 1.19871 1.46530 1.14618 1.55763 1.18579 1.20089 0.82919 0.79469 0.88676 1.90684 1.51350 1.60091 1.40546 1.22050 0.97240 1.02178 0.98220 1.21374 0.92959 0.94401 0.86744 0.88321 1.22617 1.00225 0.98239 0.94595 1.22404 1.04811 0.95550 0.97102 1.21011 0.76784 0.87640 0.83983 1.90696 1.51306 1.79216 1.20803 1.48292 1.54012 1.12136 1.20772 1.21565 1.00909 0.80429 1.02140 0.93091 0.94263 0.95888 0.95079 0.88321 0.92542 0.77973 0.89353 0.89014 0.89810 0.88296 0.88121 0.87876 0.90107 0.91782 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.52 37.15 0.32 -2.48 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.08 16 3 C 0.27 6.38 2.24 -69.08 -0.15 6.22 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -13.55 8.73 -34.44 -0.30 -13.85 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 13 N -0.71 -13.24 5.02 -54.93 -0.28 -13.52 16 14 C 0.50 8.53 5.72 -10.99 -0.06 8.46 16 15 O -0.55 -10.85 12.05 5.56 0.07 -10.78 16 16 C -0.16 -1.90 5.52 -27.89 -0.15 -2.06 16 17 C 0.15 1.76 2.74 -67.01 -0.18 1.57 16 18 H 0.10 1.23 7.92 -51.93 -0.41 0.82 16 19 C -0.12 -1.35 6.11 -25.10 -0.15 -1.50 16 20 C -0.16 -1.68 6.86 -26.75 -0.18 -1.86 16 21 C 0.52 6.84 8.02 -10.86 -0.09 6.76 16 22 O -0.54 -9.03 17.36 5.56 0.10 -8.93 16 23 N -0.62 -7.17 2.97 -172.71 -0.51 -7.69 16 24 C 0.09 0.87 11.13 59.85 0.67 1.53 16 25 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 26 H 0.04 0.75 4.91 -51.93 -0.25 0.49 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.39 6.36 8.54 -40.82 -0.35 6.02 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.26 6.02 -51.93 -0.31 0.95 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.81 7.55 -51.93 -0.39 0.42 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -30.16 321.51 -6.89 -37.05 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.18 Total: 5.96 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.54 Total: 1.36 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.16 Total: -44.51 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.16 Total: -19.72 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.16 -6.89 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509241.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.164 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds