Wall clock time and date at job start Mon Mar 30 2020 01:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47165 * 2 1 4 4 H 1.08997 * 109.47394 * 54.99431 * 3 2 1 5 5 C 1.50701 * 109.46827 * 174.99703 * 3 2 1 6 6 H 1.08005 * 119.99945 * 119.99895 * 5 3 2 7 7 C 1.37873 * 120.00426 * 299.99361 * 5 3 2 8 8 N 1.31512 * 119.99775 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00394 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47149 * 90.00211 * 9 7 5 11 11 H 1.48502 * 109.47486 * 210.00395 * 9 7 5 12 12 H 1.48501 * 109.47128 * 330.00071 * 9 7 5 13 13 N 1.46504 * 109.46728 * 294.99222 * 3 2 1 14 14 C 1.34780 * 119.99596 * 85.00313 * 13 3 2 15 15 O 1.21278 * 119.99899 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00019 * 179.97438 * 14 13 3 17 17 C 1.52995 * 109.47353 * 173.99969 * 16 14 13 18 18 H 1.08997 * 110.21861 * 55.86021 * 17 16 14 19 19 C 1.54483 * 110.24488 * 293.93247 * 17 16 14 20 20 C 1.54622 * 101.76470 * 266.41442 * 19 17 16 21 21 C 1.51281 * 104.19697 * 335.20101 * 20 19 17 22 22 O 1.21280 * 124.94454 * 195.98648 * 21 20 19 23 23 N 1.34422 * 110.11485 * 16.25434 * 21 20 19 24 24 C 1.46500 * 124.34956 * 180.40841 * 23 21 20 25 25 H 1.08996 * 109.47653 * 300.00657 * 1 2 3 26 26 H 1.09001 * 109.47128 * 60.00402 * 1 2 3 27 27 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47653 * 239.99343 * 2 1 3 29 29 H 1.09001 * 109.47128 * 119.99598 * 2 1 3 30 30 H 0.97001 * 120.00047 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99986 * 265.00342 * 13 3 2 32 32 H 1.09005 * 109.46923 * 53.99911 * 16 14 13 33 33 H 1.08994 * 109.47431 * 294.00302 * 16 14 13 34 34 H 1.08999 * 110.96892 * 148.29561 * 19 17 16 35 35 H 1.08993 * 111.00326 * 24.54734 * 19 17 16 36 36 H 1.09001 * 110.48570 * 216.52438 * 20 19 17 37 37 H 1.09004 * 110.48985 * 93.88303 * 20 19 17 38 38 H 1.08997 * 109.46876 * 5.21707 * 24 23 21 39 39 H 1.09000 * 109.47261 * 125.21853 * 24 23 21 40 40 H 1.09002 * 109.46788 * 245.21966 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9817 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3369 2.1730 9 14 6.0048 0.8813 1.3820 10 1 6.4415 2.1142 2.0850 11 1 6.4394 -0.3098 2.1552 12 1 6.6135 0.8415 0.0280 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3672 15 8 -0.3392 2.6327 -0.4343 16 6 0.0367 3.3385 -2.6547 17 6 -1.4312 3.7624 -2.5754 18 1 -1.5929 4.3991 -1.7056 19 6 -2.3439 2.5181 -2.5043 20 6 -2.6941 2.2984 -3.9942 21 6 -2.5292 3.6659 -4.6197 22 8 -2.9657 3.9914 -5.7034 23 7 -1.8235 4.4662 -3.8021 24 6 -1.4890 5.8616 -4.0975 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0615 2.9497 31 1 2.2720 2.1230 -1.9978 32 1 0.1702 2.6444 -3.4846 33 1 0.6609 4.2179 -2.8127 34 1 -3.2401 2.7247 -1.9193 35 1 -1.8053 1.6612 -2.0997 36 1 -3.7228 1.9532 -4.0974 37 1 -2.0045 1.5860 -4.4472 38 1 -1.9764 6.1635 -5.0246 39 1 -1.8329 6.4981 -3.2822 40 1 -0.4090 5.9612 -4.2056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597509241.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:01 Heat of formation + Delta-G solvation = -102.139337 kcal Electronic energy + Delta-G solvation = -21194.459352 eV Core-core repulsion = 18007.900668 eV Total energy + Delta-G solvation = -3186.558685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73916 -40.40287 -37.80662 -36.74518 -34.24203 -33.73177 -32.95360 -31.40179 -28.88935 -27.53750 -26.48949 -24.87340 -22.81901 -21.76089 -20.93989 -20.31374 -18.85769 -17.84389 -17.50187 -17.19427 -16.87554 -16.49874 -16.09680 -15.93395 -15.05100 -14.79736 -14.61052 -14.45238 -14.09790 -13.98108 -13.63634 -13.44650 -13.22698 -13.13161 -13.04468 -12.90796 -12.82076 -12.65101 -12.13749 -11.98338 -11.83480 -11.81401 -11.49523 -11.00479 -10.92247 -10.59757 -10.44545 -9.77660 -9.52857 -8.13284 -6.29711 1.45727 1.46884 1.51000 1.56416 1.94389 1.95842 2.40324 2.79674 3.16608 3.39608 3.57296 3.75475 4.03032 4.13611 4.32461 4.39630 4.49788 4.57621 4.59082 4.65246 4.69937 4.77996 4.84121 4.88146 4.94148 5.06217 5.15476 5.21852 5.36774 5.52043 5.53849 5.62509 5.69987 5.87447 5.98849 6.06876 6.23832 6.79745 7.08145 7.11178 7.38113 7.67569 8.91490 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034333 B = 0.004263 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.336999 B = 6567.247686 C = 7003.386987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.262 1.262 13 N -0.708 5.708 14 C 0.505 3.495 15 O -0.577 6.577 16 C -0.140 4.140 17 C 0.152 3.848 18 H 0.093 0.907 19 C -0.116 4.116 20 C -0.150 4.150 21 C 0.511 3.489 22 O -0.582 6.582 23 N -0.613 5.613 24 C 0.084 3.916 25 H 0.026 0.974 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.263 0.737 31 H 0.402 0.598 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 5.347 -10.759 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.186 1.186 13 N -0.357 5.357 14 C 0.291 3.709 15 O -0.458 6.458 16 C -0.181 4.181 17 C 0.048 3.952 18 H 0.111 0.889 19 C -0.154 4.154 20 C -0.190 4.190 21 C 0.301 3.699 22 O -0.463 6.463 23 N -0.345 5.345 24 C -0.057 4.057 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.641 5.502 -10.490 14.097 hybrid contribution 1.340 -0.015 0.290 1.371 sum -6.301 5.487 -10.201 13.186 Atomic orbital electron populations 1.21690 0.96502 0.99109 1.00713 1.21782 0.94219 0.99154 1.01020 1.18317 0.93235 0.89218 0.81667 0.98109 1.21619 0.91880 1.38629 1.06456 0.91244 1.25698 1.02848 0.94544 0.95209 1.70039 1.36861 1.38462 1.09856 0.85463 0.79754 0.77323 0.78498 1.20546 1.21190 1.18607 1.46295 1.15851 1.56137 1.17427 1.20804 0.81695 0.78515 0.89866 1.90683 1.52037 1.60890 1.42201 1.21953 0.97663 1.02852 0.95659 1.21308 0.92785 0.94597 0.86555 0.88883 1.22562 1.00182 0.97487 0.95152 1.22410 1.06065 0.94418 0.96068 1.21405 0.76343 0.88625 0.83537 1.90679 1.53007 1.80079 1.22521 1.48357 1.53218 1.12757 1.20204 1.21757 1.02000 0.79524 1.02390 0.95432 0.92747 0.93989 0.94292 0.91484 0.92731 0.76359 0.87299 0.86978 0.89389 0.89480 0.86843 0.86479 0.90830 0.90339 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 8.52 71.98 0.61 -4.38 16 2 C -0.12 -5.66 5.45 30.59 0.17 -5.49 16 3 C 0.28 13.29 2.24 44.25 0.10 13.39 16 4 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 5 C -0.55 -27.61 8.73 25.60 0.22 -27.39 16 6 H 0.07 3.29 7.74 -2.91 -0.02 3.26 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -50.71 11.29 21.45 0.24 -50.46 16 9 Si 0.96 40.86 29.54 68.60 2.03 42.89 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 13 N -0.71 -25.67 5.02 -446.08 -2.24 -27.91 16 14 C 0.50 16.31 5.72 87.66 0.50 16.81 16 15 O -0.58 -22.65 12.05 -3.02 -0.04 -22.68 16 16 C -0.14 -3.02 5.52 29.84 0.16 -2.86 16 17 C 0.15 3.22 2.74 45.44 0.12 3.35 16 18 H 0.09 2.14 7.92 -2.39 -0.02 2.12 16 19 C -0.12 -2.39 6.11 31.65 0.19 -2.20 16 20 C -0.15 -2.81 6.86 30.59 0.21 -2.60 16 21 C 0.51 12.56 8.02 87.90 0.71 13.27 16 22 O -0.58 -18.74 17.36 -3.03 -0.05 -18.80 16 23 N -0.61 -12.81 2.97 -818.91 -2.44 -15.25 16 24 C 0.08 1.41 11.13 127.77 1.42 2.84 16 25 H 0.03 1.22 7.85 -2.39 -0.02 1.20 16 26 H 0.05 2.01 4.91 -2.39 -0.01 2.00 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 3.54 5.95 -2.39 -0.01 3.53 16 30 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.40 12.33 8.54 -92.71 -0.79 11.54 16 32 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 2.05 6.02 -2.39 -0.01 2.04 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.37 7.55 -2.39 -0.02 1.35 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -66.05 321.51 2.62 -63.42 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.25 Total: 22.72 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 4.87 Total: 6.08 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -4.43 Total: -93.63 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.09 Total: -41.48 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -66.05 2.62 -63.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509241.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.716 kcal (2) G-P(sol) polarization free energy of solvation -66.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds