Wall clock time and date at job start Mon Mar 30 2020 01:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47152 * 2 1 4 4 H 1.08999 * 109.47007 * 54.99874 * 3 2 1 5 5 C 1.50700 * 109.46967 * 174.99553 * 3 2 1 6 6 H 1.07999 * 119.99816 * 120.00038 * 5 3 2 7 7 C 1.37869 * 120.00158 * 300.00081 * 5 3 2 8 8 N 1.31519 * 120.00454 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99938 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46974 * 270.00034 * 9 7 5 11 11 H 1.48498 * 109.47043 * 30.00130 * 9 7 5 12 12 H 1.48502 * 109.47270 * 149.99915 * 9 7 5 13 13 N 1.46499 * 109.46980 * 294.99789 * 3 2 1 14 14 C 1.34776 * 120.00068 * 84.99987 * 13 3 2 15 15 O 1.21281 * 119.99976 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00053 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47034 * 186.10232 * 16 14 13 18 18 H 1.08998 * 110.21417 * 304.11965 * 17 16 14 19 19 C 1.54482 * 110.24930 * 66.05095 * 17 16 14 20 20 C 1.54631 * 101.76389 * 93.58430 * 19 17 16 21 21 C 1.51278 * 104.19676 * 24.79650 * 20 19 17 22 22 O 1.21287 * 124.94196 * 163.70625 * 21 20 19 23 23 N 1.34416 * 110.11799 * 343.75003 * 21 20 19 24 24 C 1.46503 * 124.35128 * 179.58882 * 23 21 20 25 25 H 1.08994 * 109.47478 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47434 * 300.00517 * 1 2 3 27 27 H 1.09007 * 109.47351 * 60.00096 * 1 2 3 28 28 H 1.08994 * 109.47649 * 239.99769 * 2 1 3 29 29 H 1.08998 * 109.46802 * 119.99812 * 2 1 3 30 30 H 0.96993 * 120.00420 * 180.02562 * 8 7 5 31 31 H 0.96994 * 120.00053 * 265.00383 * 13 3 2 32 32 H 1.09003 * 109.47131 * 306.09635 * 16 14 13 33 33 H 1.08998 * 109.47181 * 66.10448 * 16 14 13 34 34 H 1.08995 * 110.97249 * 211.70165 * 19 17 16 35 35 H 1.09001 * 110.96324 * 335.42955 * 19 17 16 36 36 H 1.08996 * 110.48679 * 143.47756 * 20 19 17 37 37 H 1.08999 * 110.48321 * 266.12417 * 20 19 17 38 38 H 1.09002 * 109.46810 * 275.70408 * 24 23 21 39 39 H 1.08996 * 109.47271 * 35.70785 * 24 23 21 40 40 H 1.08998 * 109.47010 * 155.70840 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3366 2.1730 9 14 6.0049 0.8800 1.3813 10 1 6.5537 -0.3520 0.7600 11 1 6.5575 2.0719 0.6891 12 1 6.3835 0.9215 2.8167 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3396 2.6319 -0.4345 16 6 0.0368 3.3386 -2.6545 17 6 -1.3182 4.0255 -2.4724 18 1 -2.0628 3.3057 -2.1328 19 6 -1.1972 5.1870 -1.4610 20 6 -0.9353 6.3917 -2.3943 21 6 -1.5376 5.9738 -3.7176 22 8 -1.7954 6.7272 -4.6324 23 7 -1.7463 4.6460 -3.7317 24 6 -2.3267 3.9124 -4.8592 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8291 -0.0611 2.9499 31 1 2.2719 2.1231 -1.9978 32 1 0.7877 4.0817 -2.9230 33 1 -0.0371 2.5938 -3.4469 34 1 -2.1255 5.3187 -0.9053 35 1 -0.3583 5.0282 -0.7834 36 1 -1.4322 7.2841 -2.0139 37 1 0.1354 6.5661 -2.5007 38 1 -3.4142 3.9606 -4.8029 39 1 -1.9911 4.3594 -5.7949 40 1 -2.0067 2.8712 -4.8186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597509242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:05 Heat of formation + Delta-G solvation = -81.957566 kcal Electronic energy + Delta-G solvation = -21125.455658 eV Core-core repulsion = 17939.772121 eV Total energy + Delta-G solvation = -3185.683537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69163 -38.99969 -36.65122 -35.07478 -32.85264 -32.46249 -31.32937 -30.16938 -27.13121 -26.71211 -25.34282 -23.06013 -21.75746 -20.18711 -19.38024 -19.33390 -17.30255 -16.69981 -16.31226 -15.88694 -15.31957 -15.07980 -14.93760 -14.29021 -13.96606 -13.64781 -13.36157 -13.03658 -12.89374 -12.73197 -12.41757 -12.30134 -12.20679 -11.82180 -11.48633 -11.29463 -11.03720 -10.94611 -10.90009 -10.82542 -10.36408 -10.22681 -9.84665 -9.68545 -9.18688 -9.07856 -8.76667 -8.54498 -7.88421 -6.16942 -4.26623 2.52351 2.88696 3.20879 3.28306 3.29558 3.31549 4.02468 4.29226 4.42318 4.48111 4.73481 4.94472 5.12133 5.14511 5.15289 5.27374 5.41604 5.49472 5.55133 5.65849 5.66972 5.81243 6.04728 6.08346 6.33801 6.39643 6.44725 6.60323 6.97899 7.02280 7.13844 7.30807 7.39109 7.56707 7.67623 7.84798 8.10321 8.13376 8.60249 8.72263 9.05990 9.41132 10.88230 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.004317 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.996448 B = 6485.160624 C = 6891.636595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.285 1.285 13 N -0.707 5.707 14 C 0.504 3.496 15 O -0.547 6.547 16 C -0.155 4.155 17 C 0.149 3.851 18 H 0.099 0.901 19 C -0.118 4.118 20 C -0.159 4.159 21 C 0.517 3.483 22 O -0.542 6.542 23 N -0.619 5.619 24 C 0.095 3.905 25 H 0.021 0.979 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 4.990 -9.246 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.211 1.211 13 N -0.355 5.355 14 C 0.288 3.712 15 O -0.427 6.427 16 C -0.197 4.197 17 C 0.045 3.955 18 H 0.117 0.883 19 C -0.156 4.156 20 C -0.199 4.199 21 C 0.305 3.695 22 O -0.419 6.419 23 N -0.353 5.353 24 C -0.047 4.047 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.010 5.204 -8.922 13.071 hybrid contribution 1.400 -0.269 -0.327 1.463 sum -6.610 4.935 -9.249 12.393 Atomic orbital electron populations 1.21831 0.98329 0.98009 1.01173 1.21940 0.92621 0.99875 1.02272 1.18786 0.94174 0.89160 0.81004 0.93215 1.21230 0.90763 1.39105 1.06284 0.92143 1.24874 0.98564 0.94775 0.95378 1.69886 1.35138 1.37537 1.09357 0.86473 0.84919 0.78454 0.77414 1.20561 1.19872 1.21055 1.46528 1.14618 1.55777 1.18557 1.20087 0.82926 0.79458 0.88689 1.90686 1.51281 1.60126 1.40559 1.22064 0.98262 1.01151 0.98218 1.21392 0.95666 0.95953 0.82501 0.88347 1.22596 1.04653 0.91672 0.96677 1.22404 1.03230 1.00482 0.93760 1.21006 0.77183 0.82003 0.89285 1.90699 1.53557 1.56278 1.41385 1.48314 1.61928 1.08072 1.16962 1.21533 0.98064 0.96617 0.88456 0.95941 0.93102 0.94338 0.95121 0.88310 0.92540 0.77977 0.89253 0.89125 0.89824 0.88282 0.88121 0.87839 0.92583 0.91078 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.53 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.21 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.50 8.73 -34.44 -0.30 -13.80 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.90 11.29 55.43 0.63 -23.28 16 9 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.71 -13.19 5.02 -54.93 -0.28 -13.46 16 14 C 0.50 8.48 5.72 -10.99 -0.06 8.42 16 15 O -0.55 -10.81 12.05 5.56 0.07 -10.74 16 16 C -0.16 -1.89 5.52 -27.88 -0.15 -2.04 16 17 C 0.15 1.75 2.73 -67.01 -0.18 1.56 16 18 H 0.10 1.21 7.92 -51.93 -0.41 0.80 16 19 C -0.12 -1.35 6.11 -25.10 -0.15 -1.51 16 20 C -0.16 -1.71 6.86 -26.74 -0.18 -1.89 16 21 C 0.52 6.90 8.02 -10.86 -0.09 6.82 16 22 O -0.54 -9.11 17.67 5.55 0.10 -9.01 16 23 N -0.62 -7.19 2.97 -172.70 -0.51 -7.70 16 24 C 0.10 0.90 10.92 59.85 0.65 1.55 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 27 H 0.04 0.76 5.65 -51.92 -0.29 0.47 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.39 6.33 8.54 -40.82 -0.35 5.98 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.29 6.75 -51.93 -0.35 0.94 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 40 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 LS Contribution 323.56 15.07 4.88 4.88 Total: -1.00 -30.19 323.56 -6.97 -37.16 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.28 Total: 5.84 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.55 Total: 1.35 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.16 Total: -44.44 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.17 Total: -19.76 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.19 -6.97 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.798 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds