Wall clock time and date at job start Mon Mar 30 2020 01:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47152 * 2 1 4 4 H 1.08999 * 109.47007 * 54.99874 * 3 2 1 5 5 C 1.50700 * 109.46967 * 174.99553 * 3 2 1 6 6 H 1.07999 * 119.99816 * 120.00038 * 5 3 2 7 7 C 1.37869 * 120.00158 * 300.00081 * 5 3 2 8 8 N 1.31519 * 120.00454 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99938 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46974 * 270.00034 * 9 7 5 11 11 H 1.48498 * 109.47043 * 30.00130 * 9 7 5 12 12 H 1.48502 * 109.47270 * 149.99915 * 9 7 5 13 13 N 1.46499 * 109.46980 * 294.99789 * 3 2 1 14 14 C 1.34776 * 120.00068 * 84.99987 * 13 3 2 15 15 O 1.21281 * 119.99976 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00053 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47034 * 186.10232 * 16 14 13 18 18 H 1.08998 * 110.21417 * 304.11965 * 17 16 14 19 19 C 1.54482 * 110.24930 * 66.05095 * 17 16 14 20 20 C 1.54631 * 101.76389 * 93.58430 * 19 17 16 21 21 C 1.51278 * 104.19676 * 24.79650 * 20 19 17 22 22 O 1.21287 * 124.94196 * 163.70625 * 21 20 19 23 23 N 1.34416 * 110.11799 * 343.75003 * 21 20 19 24 24 C 1.46503 * 124.35128 * 179.58882 * 23 21 20 25 25 H 1.08994 * 109.47478 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47434 * 300.00517 * 1 2 3 27 27 H 1.09007 * 109.47351 * 60.00096 * 1 2 3 28 28 H 1.08994 * 109.47649 * 239.99769 * 2 1 3 29 29 H 1.08998 * 109.46802 * 119.99812 * 2 1 3 30 30 H 0.96993 * 120.00420 * 180.02562 * 8 7 5 31 31 H 0.96994 * 120.00053 * 265.00383 * 13 3 2 32 32 H 1.09003 * 109.47131 * 306.09635 * 16 14 13 33 33 H 1.08998 * 109.47181 * 66.10448 * 16 14 13 34 34 H 1.08995 * 110.97249 * 211.70165 * 19 17 16 35 35 H 1.09001 * 110.96324 * 335.42955 * 19 17 16 36 36 H 1.08996 * 110.48679 * 143.47756 * 20 19 17 37 37 H 1.08999 * 110.48321 * 266.12417 * 20 19 17 38 38 H 1.09002 * 109.46810 * 275.70408 * 24 23 21 39 39 H 1.08996 * 109.47271 * 35.70785 * 24 23 21 40 40 H 1.08998 * 109.47010 * 155.70840 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3366 2.1730 9 14 6.0049 0.8800 1.3813 10 1 6.5537 -0.3520 0.7600 11 1 6.5575 2.0719 0.6891 12 1 6.3835 0.9215 2.8167 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3396 2.6319 -0.4345 16 6 0.0368 3.3386 -2.6545 17 6 -1.3182 4.0255 -2.4724 18 1 -2.0628 3.3057 -2.1328 19 6 -1.1972 5.1870 -1.4610 20 6 -0.9353 6.3917 -2.3943 21 6 -1.5376 5.9738 -3.7176 22 8 -1.7954 6.7272 -4.6324 23 7 -1.7463 4.6460 -3.7317 24 6 -2.3267 3.9124 -4.8592 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8291 -0.0611 2.9499 31 1 2.2719 2.1231 -1.9978 32 1 0.7877 4.0817 -2.9230 33 1 -0.0371 2.5938 -3.4469 34 1 -2.1255 5.3187 -0.9053 35 1 -0.3583 5.0282 -0.7834 36 1 -1.4322 7.2841 -2.0139 37 1 0.1354 6.5661 -2.5007 38 1 -3.4142 3.9606 -4.8029 39 1 -1.9911 4.3594 -5.7949 40 1 -2.0067 2.8712 -4.8186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597509242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:04 Heat of formation + Delta-G solvation = -101.840521 kcal Electronic energy + Delta-G solvation = -21126.317848 eV Core-core repulsion = 17939.772121 eV Total energy + Delta-G solvation = -3186.545727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.73142 -40.39975 -37.82009 -36.74364 -34.23916 -33.74076 -32.93717 -31.41962 -28.90081 -27.53574 -26.49748 -24.83898 -22.89682 -21.71828 -20.94147 -20.31790 -18.83667 -17.87903 -17.43547 -17.20241 -17.00212 -16.36909 -16.15376 -15.87030 -15.09463 -14.83042 -14.59461 -14.35826 -14.26585 -13.95955 -13.57870 -13.45659 -13.25685 -13.13069 -13.05381 -12.91258 -12.82569 -12.62341 -12.13647 -12.01327 -11.85578 -11.83323 -11.52293 -10.99551 -10.91161 -10.59624 -10.45406 -9.77865 -9.52507 -8.12947 -6.29348 1.46099 1.47416 1.50594 1.56783 1.93458 1.96855 2.40663 2.79802 3.16988 3.39428 3.57101 3.74856 4.02565 4.12957 4.32391 4.38508 4.50794 4.56041 4.59329 4.64103 4.66393 4.77792 4.83250 4.88083 4.93510 5.10650 5.14772 5.15253 5.33481 5.50088 5.54049 5.61948 5.70012 5.86444 5.98821 6.06397 6.23322 6.80124 7.08394 7.10941 7.38553 7.67946 8.91846 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.004317 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.996448 B = 6485.160624 C = 6891.636595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.123 4.123 3 C 0.280 3.720 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.265 1.265 12 H -0.289 1.289 13 N -0.708 5.708 14 C 0.505 3.495 15 O -0.577 6.577 16 C -0.140 4.140 17 C 0.152 3.848 18 H 0.096 0.904 19 C -0.116 4.116 20 C -0.151 4.151 21 C 0.511 3.489 22 O -0.581 6.581 23 N -0.613 5.613 24 C 0.088 3.912 25 H 0.040 0.960 26 H 0.027 0.973 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.263 0.737 31 H 0.402 0.598 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.901 5.059 -10.815 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.021 0.979 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.200 1.200 11 H -0.190 1.190 12 H -0.214 1.214 13 N -0.357 5.357 14 C 0.291 3.709 15 O -0.458 6.458 16 C -0.181 4.181 17 C 0.048 3.952 18 H 0.114 0.886 19 C -0.154 4.154 20 C -0.190 4.190 21 C 0.300 3.700 22 O -0.462 6.462 23 N -0.345 5.345 24 C -0.053 4.053 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.603 5.264 -10.524 14.010 hybrid contribution 1.213 -0.296 0.172 1.261 sum -6.390 4.969 -10.353 13.141 Atomic orbital electron populations 1.21667 0.96669 0.99012 1.00561 1.21792 0.94025 0.99337 1.01028 1.18314 0.93255 0.89120 0.81726 0.97938 1.21607 0.91832 1.38609 1.06431 0.91230 1.25692 1.02811 0.94563 0.95192 1.70037 1.36848 1.38486 1.09878 0.85465 0.79788 0.78745 0.77047 1.19960 1.18983 1.21448 1.46290 1.15852 1.56159 1.17409 1.20803 0.81702 0.78491 0.89878 1.90684 1.51980 1.60936 1.42204 1.21966 0.98683 1.01723 0.95752 1.21327 0.95404 0.95896 0.82582 0.88605 1.22537 1.04277 0.92036 0.96539 1.22406 1.03946 1.00561 0.92135 1.21369 0.76796 0.82285 0.89502 1.90681 1.55429 1.57241 1.42862 1.48373 1.61137 1.07714 1.17261 1.21739 0.98507 0.97549 0.87517 0.94062 0.95373 0.93163 0.94346 0.91402 0.92734 0.76358 0.87558 0.86610 0.89380 0.89819 0.86915 0.86642 0.91930 0.91378 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.51 71.98 0.61 -4.42 16 2 C -0.12 -5.69 5.45 30.60 0.17 -5.52 16 3 C 0.28 13.27 2.24 44.25 0.10 13.36 16 4 H 0.00 0.15 7.58 -2.39 -0.02 0.14 16 5 C -0.55 -27.45 8.73 25.60 0.22 -27.22 16 6 H 0.07 3.28 7.74 -2.91 -0.02 3.26 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -50.61 11.29 21.45 0.24 -50.37 16 9 Si 0.96 40.78 29.54 68.60 2.03 42.81 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 12 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.71 -25.57 5.02 -446.09 -2.24 -27.81 16 14 C 0.50 16.23 5.72 87.66 0.50 16.73 16 15 O -0.58 -22.57 12.05 -3.03 -0.04 -22.60 16 16 C -0.14 -2.99 5.52 29.85 0.16 -2.82 16 17 C 0.15 3.22 2.73 45.45 0.12 3.34 16 18 H 0.10 2.15 7.92 -2.39 -0.02 2.13 16 19 C -0.12 -2.48 6.11 31.65 0.19 -2.29 16 20 C -0.15 -2.96 6.86 30.59 0.21 -2.75 16 21 C 0.51 12.77 8.02 87.90 0.71 13.48 16 22 O -0.58 -18.99 17.67 -3.05 -0.05 -19.05 16 23 N -0.61 -12.79 2.97 -818.88 -2.44 -15.22 16 24 C 0.09 1.44 10.92 127.77 1.39 2.83 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.03 1.26 7.85 -2.39 -0.02 1.24 16 27 H 0.05 1.93 5.65 -2.38 -0.01 1.91 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 3.59 5.95 -2.39 -0.01 3.58 16 30 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.40 12.27 8.54 -92.71 -0.79 11.48 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.09 6.75 -2.39 -0.02 2.08 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.18 8.05 -2.39 -0.02 1.16 16 40 H 0.10 1.15 8.13 -2.39 -0.02 1.13 16 Total: -1.00 -65.98 323.56 2.59 -63.39 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.24 Total: 22.76 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 4.84 Total: 6.08 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -4.43 Total: -93.40 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.09 Total: -41.65 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -65.98 2.59 -63.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.447 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds