Wall clock time and date at job start Mon Mar 30 2020 01:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47316 * 2 1 4 4 H 1.08994 * 109.47158 * 307.00867 * 3 2 1 5 5 C 1.50702 * 109.47431 * 187.00724 * 3 2 1 6 6 H 1.07994 * 119.99741 * 240.00572 * 5 3 2 7 7 C 1.37875 * 120.00057 * 59.99654 * 5 3 2 8 8 N 1.31512 * 119.99849 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99919 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47154 * 60.00599 * 9 7 5 11 11 H 1.48507 * 109.46922 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46978 * 300.00474 * 9 7 5 13 13 N 1.46502 * 109.46833 * 67.00469 * 3 2 1 14 14 C 1.34769 * 120.00042 * 258.51469 * 13 3 2 15 15 O 1.21283 * 120.00592 * 354.53187 * 14 13 3 16 16 C 1.50701 * 120.00079 * 174.54042 * 14 13 3 17 17 C 1.52996 * 109.47419 * 181.96089 * 16 14 13 18 18 H 1.08999 * 110.28545 * 310.17070 * 17 16 14 19 19 C 1.54481 * 110.24771 * 188.19421 * 17 16 14 20 20 C 1.54633 * 101.76518 * 215.58238 * 19 17 16 21 21 C 1.51278 * 104.19561 * 24.79401 * 20 19 17 22 22 O 1.21281 * 124.94096 * 163.78013 * 21 20 19 23 23 N 1.34417 * 110.11644 * 343.75182 * 21 20 19 24 24 C 1.46506 * 124.34922 * 179.56890 * 23 21 20 25 25 H 1.09007 * 109.47431 * 182.15234 * 1 2 3 26 26 H 1.09006 * 109.47265 * 302.15317 * 1 2 3 27 27 H 1.09000 * 109.47361 * 62.15440 * 1 2 3 28 28 H 1.09009 * 109.46835 * 240.00061 * 2 1 3 29 29 H 1.08996 * 109.47295 * 120.00570 * 2 1 3 30 30 H 0.97005 * 119.99603 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00049 * 78.51896 * 13 3 2 32 32 H 1.08992 * 109.47607 * 61.95486 * 16 14 13 33 33 H 1.09007 * 109.46904 * 301.95621 * 16 14 13 34 34 H 1.08994 * 110.97091 * 97.46346 * 19 17 16 35 35 H 1.08998 * 110.96958 * 333.70134 * 19 17 16 36 36 H 1.08995 * 110.48688 * 143.47973 * 20 19 17 37 37 H 1.09004 * 110.48228 * 266.11969 * 20 19 17 38 38 H 1.08998 * 109.46939 * 359.63868 * 24 23 21 39 39 H 1.09001 * 109.47171 * 119.63619 * 24 23 21 40 40 H 1.09000 * 109.47211 * 239.63521 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5779 1.9912 -0.8206 5 6 3.5370 1.4460 -0.1733 6 1 4.1676 1.8815 0.5876 7 6 4.1015 0.8931 -1.3032 8 7 3.3335 0.3631 -2.2299 9 14 5.9571 0.8969 -1.5177 10 1 6.5862 0.1489 -0.3997 11 1 6.3077 0.2485 -2.8069 12 1 6.4526 2.2968 -1.5173 13 7 1.6940 2.0827 1.2715 14 6 0.6438 2.9246 1.3382 15 8 0.0461 3.2299 0.3281 16 6 0.2123 3.4871 2.6681 17 6 -1.0230 4.3684 2.4725 18 1 -0.8553 5.0800 1.6641 19 6 -1.3590 5.1161 3.7818 20 6 -2.9048 5.1362 3.7457 21 6 -3.2711 3.9509 2.8800 22 8 -4.3725 3.4464 2.8230 23 7 -2.1983 3.5386 2.1829 24 6 -2.2018 2.4059 1.2536 25 1 -0.3634 -1.0270 0.0386 26 1 -0.3634 0.5469 0.8701 27 1 -0.3634 0.4800 -0.9087 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.7307 -0.0262 -3.0247 31 1 2.2209 1.9006 2.0653 32 1 1.0210 4.0835 3.0901 33 1 -0.0288 2.6694 3.3474 34 1 -0.9553 6.1285 3.7675 35 1 -0.9962 4.5654 4.6497 36 1 -3.3114 5.0156 4.7497 37 1 -3.2638 6.0622 3.2963 38 1 -3.1961 1.9600 1.2281 39 1 -1.9340 2.7537 0.2559 40 1 -1.4781 1.6615 1.5853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597509243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:08 Heat of formation + Delta-G solvation = -80.173491 kcal Electronic energy + Delta-G solvation = -21472.242856 eV Core-core repulsion = 18286.636682 eV Total energy + Delta-G solvation = -3185.606174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.61237 -38.87547 -36.52701 -35.14510 -32.76133 -32.40683 -31.38095 -30.44640 -27.18493 -26.38288 -25.17223 -23.01764 -21.55353 -20.36153 -19.57214 -19.07921 -17.34436 -16.75167 -16.34124 -15.82386 -15.51607 -15.12296 -14.55209 -14.29969 -13.82627 -13.60234 -13.28358 -12.92237 -12.76403 -12.63286 -12.54736 -12.14497 -11.99191 -11.60372 -11.49394 -11.32378 -11.24748 -11.11968 -11.00772 -10.84682 -10.33336 -10.09737 -9.79010 -9.68903 -9.24549 -9.05476 -8.55562 -8.42576 -7.88320 -6.14288 -4.23592 2.66538 3.14758 3.23173 3.29065 3.29423 3.34404 3.94526 4.30765 4.33474 4.39407 4.68295 4.96265 5.09239 5.16850 5.27370 5.40883 5.50868 5.59212 5.64392 5.67912 5.72815 5.84687 6.04823 6.22127 6.26962 6.36515 6.49755 6.64434 6.89660 7.06584 7.22782 7.30108 7.38767 7.54714 7.66705 7.90775 8.14150 8.26991 8.59008 8.75926 9.06853 9.43806 10.90542 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036214 B = 0.004581 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.006635 B = 6110.195530 C = 6619.133270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.265 3.735 4 H 0.060 0.940 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.708 5.708 14 C 0.499 3.501 15 O -0.549 6.549 16 C -0.155 4.155 17 C 0.147 3.853 18 H 0.092 0.908 19 C -0.129 4.129 20 C -0.154 4.154 21 C 0.510 3.490 22 O -0.546 6.546 23 N -0.603 5.603 24 C 0.091 3.909 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 6.885 11.971 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.163 3.837 4 H 0.078 0.922 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.284 3.716 15 O -0.428 6.428 16 C -0.196 4.196 17 C 0.043 3.957 18 H 0.110 0.890 19 C -0.167 4.167 20 C -0.194 4.194 21 C 0.298 3.702 22 O -0.424 6.424 23 N -0.336 5.336 24 C -0.050 4.050 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.444 6.626 10.929 14.313 hybrid contribution 1.468 -0.236 0.223 1.504 sum -4.976 6.390 11.152 13.782 Atomic orbital electron populations 1.21874 0.98907 0.98831 1.00519 1.21939 0.92267 1.00082 1.02489 1.18831 0.94714 0.89195 0.80939 0.92236 1.21255 0.91176 1.39368 1.05433 0.92301 1.24883 0.98384 0.94863 0.95532 1.69868 1.34946 1.38198 1.09101 0.86546 0.85023 0.78303 0.77440 1.20217 1.21147 1.20242 1.46434 1.29342 1.45120 1.14639 1.20264 0.81268 0.79803 0.90218 1.90633 1.55014 1.60327 1.36842 1.22081 0.98592 1.01115 0.97839 1.21482 0.84640 0.92183 0.97432 0.88965 1.22718 0.94819 1.01830 0.97360 1.22327 0.96971 0.98554 1.01560 1.20882 0.83995 0.84735 0.80631 1.90697 1.22872 1.61370 1.67446 1.48170 1.10744 1.31701 1.42987 1.21997 1.01747 0.87150 0.94116 0.95074 0.94460 0.93347 0.88032 0.94987 0.92533 0.78103 0.87918 0.88974 0.88976 0.89799 0.88277 0.87959 0.91447 0.89323 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.70 37.15 0.36 -2.51 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.24 2.24 -69.08 -0.15 6.09 16 4 H 0.06 1.65 7.07 -51.93 -0.37 1.28 16 5 C -0.53 -13.62 8.80 -34.44 -0.30 -13.93 16 6 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.74 5.28 -17.82 -0.09 1.64 16 8 N -0.88 -24.14 11.29 55.43 0.63 -23.52 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.71 -13.21 4.66 -54.93 -0.26 -13.46 16 14 C 0.50 8.57 5.21 -10.99 -0.06 8.52 16 15 O -0.55 -11.27 12.01 5.55 0.07 -11.20 16 16 C -0.16 -1.84 4.95 -27.88 -0.14 -1.97 16 17 C 0.15 1.72 2.99 -67.01 -0.20 1.52 16 18 H 0.09 1.19 7.76 -51.93 -0.40 0.79 16 19 C -0.13 -1.02 6.68 -25.10 -0.17 -1.18 16 20 C -0.15 -1.44 6.86 -26.74 -0.18 -1.63 16 21 C 0.51 7.42 8.02 -10.86 -0.09 7.33 16 22 O -0.55 -10.08 17.35 5.56 0.10 -9.98 16 23 N -0.60 -8.68 3.18 -172.70 -0.55 -9.23 16 24 C 0.09 1.47 9.06 59.85 0.54 2.01 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.69 4.43 -51.93 -0.23 0.46 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 2.60 5.92 -51.92 -0.31 2.29 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 6.22 8.77 -40.82 -0.36 5.86 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.56 7.91 -51.93 -0.41 0.15 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.09 7.53 -51.93 -0.39 0.70 16 39 H 0.09 1.60 6.29 -51.93 -0.33 1.27 16 40 H 0.06 0.98 4.47 -51.93 -0.23 0.75 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -31.14 316.00 -6.86 -38.00 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.95 Total: 6.61 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.63 Total: 2.82 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.18 Total: -46.21 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.16 Total: -21.18 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.14 -6.86 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.175 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds