Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47138 * 2 1 4 4 H 1.08999 * 109.47176 * 305.00049 * 3 2 1 5 5 C 1.50699 * 109.46881 * 185.00280 * 3 2 1 6 6 H 1.08002 * 119.99631 * 239.99748 * 5 3 2 7 7 C 1.37874 * 120.00121 * 59.99967 * 5 3 2 8 8 N 1.31510 * 120.00351 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99728 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46932 * 120.00266 * 9 7 5 12 12 H 1.48507 * 109.46768 * 239.99790 * 9 7 5 13 13 N 1.46499 * 109.47086 * 65.00241 * 3 2 1 14 14 C 1.34777 * 119.99824 * 274.99727 * 13 3 2 15 15 O 1.21278 * 120.00191 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99991 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47152 * 300.00060 * 16 14 13 18 18 C 1.53000 * 109.46912 * 60.00288 * 16 14 13 19 19 C 1.53002 * 109.46966 * 180.02562 * 16 14 13 20 20 H 1.08995 * 110.21484 * 300.69574 * 19 16 14 21 21 C 1.54484 * 110.24158 * 178.77206 * 19 16 14 22 22 C 1.54853 * 101.66025 * 266.38806 * 21 19 16 23 23 C 1.51287 * 104.20871 * 335.19334 * 22 21 19 24 24 O 1.21278 * 124.94021 * 196.28403 * 23 22 21 25 25 N 1.34415 * 110.11529 * 16.26595 * 23 22 21 26 26 H 1.09001 * 109.46820 * 299.99711 * 1 2 3 27 27 H 1.08989 * 109.47066 * 59.99925 * 1 2 3 28 28 H 1.08997 * 109.46885 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46894 * 239.99759 * 2 1 3 30 30 H 1.08998 * 109.46915 * 120.00192 * 2 1 3 31 31 H 0.96999 * 120.00586 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00082 * 95.00753 * 13 3 2 33 33 H 1.08992 * 109.47399 * 59.99914 * 18 16 14 34 34 H 1.09004 * 109.46724 * 180.02562 * 18 16 14 35 35 H 1.09001 * 109.47194 * 299.99742 * 18 16 14 36 36 H 1.08992 * 110.97192 * 24.53484 * 21 19 16 37 37 H 1.09005 * 110.96761 * 148.29720 * 21 19 16 38 38 H 1.08996 * 110.47367 * 216.51818 * 22 21 19 39 39 H 1.08998 * 110.49295 * 93.88165 * 22 21 19 40 40 H 0.96999 * 124.35090 * 180.42864 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4063 0.3365 -2.1729 9 14 6.0051 0.8799 -1.3812 10 1 6.5988 1.5450 -0.1937 11 1 6.4962 -0.5192 -1.4628 12 1 6.4000 1.6155 -2.6093 13 7 1.6526 2.0974 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0368 3.3386 2.6545 17 1 0.0682 2.6146 3.4687 18 6 1.0073 4.4833 2.9523 19 6 -1.3825 3.8943 2.5212 20 1 -1.4309 4.6111 1.7015 21 6 -1.8210 4.5631 3.8429 22 6 -2.5564 3.4002 4.5532 23 6 -3.0058 2.4999 3.4235 24 8 -3.8477 1.6322 3.5198 25 7 -2.3367 2.8019 2.2976 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8292 -0.0613 -2.9499 32 1 2.2721 2.1232 1.9977 33 1 0.9760 5.2073 2.1382 34 1 0.7194 4.9707 3.8838 35 1 2.0183 4.0871 3.0474 36 1 -0.9563 4.8901 4.4202 37 1 -2.4986 5.3955 3.6528 38 1 -3.4167 3.7751 5.1075 39 1 -1.8759 2.8677 5.2177 40 1 -2.4679 2.3554 1.4465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599761034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = -114.993627 kcal Electronic energy + Delta-G solvation = -21507.694843 eV Core-core repulsion = 18320.578755 eV Total energy + Delta-G solvation = -3187.116089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73111 -40.34671 -37.90798 -36.75468 -34.56942 -33.87622 -32.43025 -31.95260 -28.98152 -27.58079 -25.70078 -24.75294 -22.53721 -21.42191 -21.33730 -20.76588 -18.96154 -18.43212 -17.46556 -17.22261 -16.77751 -16.55451 -16.03127 -15.63786 -15.12603 -14.78875 -14.65058 -14.33638 -14.15366 -13.82155 -13.66373 -13.53804 -13.20208 -12.89221 -12.85822 -12.73204 -12.62257 -12.37136 -12.17484 -12.12483 -11.99960 -11.68948 -11.59714 -11.03853 -10.88388 -10.59112 -10.40827 -10.05537 -9.57061 -8.16068 -6.33212 1.43564 1.45166 1.56425 1.60976 1.94660 2.36647 2.50674 2.68058 3.13880 3.48680 3.64799 3.73206 4.05580 4.17161 4.32452 4.40212 4.45643 4.51938 4.53298 4.72602 4.79280 4.86512 4.95129 5.04394 5.06479 5.17737 5.24464 5.25938 5.41216 5.45822 5.55833 5.65682 5.78931 5.86991 5.94763 6.17265 6.19067 6.76528 7.05520 7.26027 7.35173 7.65811 8.89303 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.004878 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.216503 B = 5738.929112 C = 6329.694749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.544 4.544 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.705 5.705 14 C 0.499 3.501 15 O -0.587 6.587 16 C -0.115 4.115 17 H 0.110 0.890 18 C -0.140 4.140 19 C 0.145 3.855 20 H 0.088 0.912 21 C -0.114 4.114 22 C -0.147 4.147 23 C 0.499 3.501 24 O -0.601 6.601 25 N -0.719 5.719 26 H 0.044 0.956 27 H 0.027 0.973 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.263 0.737 32 H 0.402 0.598 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 10.883 15.356 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.582 4.582 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.182 1.182 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.354 5.354 14 C 0.286 3.714 15 O -0.469 6.469 16 C -0.138 4.138 17 H 0.128 0.872 18 C -0.197 4.197 19 C 0.039 3.961 20 H 0.106 0.894 21 C -0.151 4.151 22 C -0.187 4.187 23 C 0.288 3.712 24 O -0.484 6.484 25 N -0.371 5.371 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.236 0.764 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.002 10.393 14.668 18.660 hybrid contribution 1.022 -0.869 -1.188 1.792 sum -3.980 9.524 13.480 16.978 Atomic orbital electron populations 1.21655 0.97148 0.98734 1.00261 1.21786 0.93540 0.99691 1.00974 1.18285 0.93511 0.88797 0.81783 0.98379 1.21621 0.91541 1.38579 1.06496 0.90932 1.25766 1.03174 0.94462 0.95135 1.70056 1.36980 1.38568 1.09939 0.85353 0.79346 0.77687 0.78273 1.18186 1.20795 1.21102 1.46254 1.15915 1.55954 1.17241 1.21264 0.81498 0.78278 0.90356 1.90616 1.52223 1.61333 1.42694 1.21837 0.97072 1.00075 0.94768 0.87230 1.21857 0.97899 0.96088 1.03890 1.21641 0.85911 0.87939 1.00587 0.89416 1.22888 1.02755 0.96759 0.92699 1.22449 1.03717 0.96473 0.96030 1.21921 0.79431 0.83243 0.86606 1.90697 1.35726 1.36714 1.85222 1.46651 1.39743 1.38199 1.12474 0.93704 0.95359 0.94428 0.91284 0.94480 0.92741 0.76377 0.92592 0.87166 0.91542 0.85176 0.87949 0.86492 0.86018 0.75922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.52 71.98 0.61 -4.89 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.79 16 3 C 0.28 13.90 2.24 44.24 0.10 13.99 16 4 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 5 C -0.54 -27.95 8.73 25.60 0.22 -27.73 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.01 0.77 5.29 84.65 0.45 1.21 16 8 N -0.92 -52.16 11.29 21.45 0.24 -51.92 16 9 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 13 N -0.71 -26.85 4.91 -446.11 -2.19 -29.04 16 14 C 0.50 17.28 5.58 87.66 0.49 17.77 16 15 O -0.59 -24.92 11.86 -3.02 -0.04 -24.95 16 16 C -0.12 -2.46 2.50 -11.54 -0.03 -2.48 16 17 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 18 C -0.14 -2.06 8.87 71.98 0.64 -1.43 16 19 C 0.14 2.89 2.55 45.45 0.12 3.01 16 20 H 0.09 1.90 8.10 -2.39 -0.02 1.88 16 21 C -0.11 -1.16 6.54 31.73 0.21 -0.95 16 22 C -0.15 -2.14 6.86 30.67 0.21 -1.93 16 23 C 0.50 13.78 8.43 87.90 0.74 14.52 16 24 O -0.60 -22.75 18.03 -3.02 -0.05 -22.81 16 25 N -0.72 -19.72 5.37 -439.44 -2.36 -22.08 16 26 H 0.04 1.95 5.64 -2.39 -0.01 1.94 16 27 H 0.03 1.37 7.85 -2.39 -0.02 1.35 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 29 H 0.07 3.84 5.95 -2.39 -0.01 3.82 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.40 12.88 7.96 -92.71 -0.74 12.15 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.72 6.17 -2.39 -0.01 0.71 16 35 H 0.07 1.04 7.56 -2.39 -0.02 1.02 16 36 H 0.13 0.51 5.89 -2.39 -0.01 0.49 16 37 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.40 13.38 7.92 -92.71 -0.73 12.65 16 Total: -1.00 -73.10 317.56 1.14 -71.96 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.41 Total: 30.15 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 3.92 Total: 5.31 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.31 Total: -103.05 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -0.09 Total: -47.76 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -73.10 1.14 -71.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599761034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.031 kcal (2) G-P(sol) polarization free energy of solvation -73.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds