Wall clock time and date at job start Mon Mar 30 2020 01:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47290 * 2 1 4 4 H 1.09003 * 109.46934 * 305.69830 * 3 2 1 5 5 C 1.50693 * 109.47397 * 185.69995 * 3 2 1 6 6 H 1.08004 * 119.99720 * 275.00296 * 5 3 2 7 7 C 1.37873 * 120.00156 * 95.00231 * 5 3 2 8 8 N 1.31523 * 119.99922 * 184.83342 * 7 5 3 9 9 Si 1.86796 * 120.00181 * 4.83085 * 7 5 3 10 10 H 1.48501 * 109.47238 * 84.85936 * 9 7 5 11 11 H 1.48500 * 109.47246 * 204.86400 * 9 7 5 12 12 H 1.48507 * 109.46943 * 324.86139 * 9 7 5 13 13 N 1.46498 * 109.47176 * 65.69331 * 3 2 1 14 14 C 1.34777 * 120.00284 * 275.00689 * 13 3 2 15 15 O 1.21281 * 120.00170 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99996 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47186 * 59.99365 * 16 14 13 18 18 C 1.53000 * 109.46909 * 299.99618 * 16 14 13 19 19 C 1.52999 * 109.47263 * 179.97438 * 16 14 13 20 20 H 1.09002 * 110.21510 * 304.52573 * 19 16 14 21 21 C 1.54474 * 110.24666 * 182.50183 * 19 16 14 22 22 C 1.54633 * 101.76677 * 215.58566 * 21 19 16 23 23 C 1.51286 * 104.19333 * 24.79817 * 22 21 19 24 24 O 1.21279 * 124.94524 * 164.01695 * 23 22 21 25 25 N 1.34420 * 110.11470 * 343.74715 * 23 22 21 26 26 H 1.08999 * 109.46913 * 60.00226 * 1 2 3 27 27 H 1.09004 * 109.46580 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47188 * 299.99839 * 1 2 3 29 29 H 1.09004 * 109.47213 * 239.99889 * 2 1 3 30 30 H 1.08999 * 109.47396 * 119.99994 * 2 1 3 31 31 H 0.96994 * 119.99670 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99973 * 94.99884 * 13 3 2 33 33 H 1.09007 * 109.47080 * 179.97438 * 18 16 14 34 34 H 1.09001 * 109.47511 * 299.99933 * 18 16 14 35 35 H 1.09007 * 109.47117 * 60.00268 * 18 16 14 36 36 H 1.09004 * 110.96849 * 333.70271 * 21 19 16 37 37 H 1.08994 * 110.96906 * 97.42935 * 21 19 16 38 38 H 1.08997 * 110.48612 * 266.12434 * 22 21 19 39 39 H 1.09000 * 110.48997 * 143.47131 * 22 21 19 40 40 H 0.97001 * 124.34867 * 179.61283 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1411 6 1 4.1651 1.3333 0.7328 7 6 4.1156 1.5894 -1.3858 8 7 5.4204 1.4964 -1.5220 9 14 3.0416 1.9171 -2.8786 10 1 2.7751 3.3741 -2.9864 11 1 3.7399 1.4496 -4.1030 12 1 1.7560 1.1882 -2.7331 13 7 1.6669 2.0924 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3341 2.6308 0.4662 16 6 0.0669 3.3268 2.6853 17 1 0.7607 4.1412 2.8937 18 6 0.1235 2.3049 3.8226 19 6 -1.3533 3.8842 2.5701 20 1 -1.4268 4.5537 1.7130 21 6 -1.7424 4.6281 3.8668 22 6 -3.2467 4.2899 3.9850 23 6 -3.3962 2.9921 3.2219 24 8 -4.3503 2.2473 3.2983 25 7 -2.3204 2.7877 2.4424 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8250 1.5984 -2.3976 32 1 2.2949 2.1150 1.9978 33 1 -0.1539 2.7882 4.7594 34 1 -0.5703 1.4905 3.6142 35 1 1.1355 1.9082 3.9045 36 1 -1.1871 4.2400 4.7207 37 1 -1.5907 5.7022 3.7608 38 1 -3.8509 5.0732 3.5275 39 1 -3.5259 4.1524 5.0297 40 1 -2.1990 2.0148 1.8689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599761035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:28 Heat of formation + Delta-G solvation = -91.610017 kcal Electronic energy + Delta-G solvation = -21565.507983 eV Core-core repulsion = 18379.405884 eV Total energy + Delta-G solvation = -3186.102099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75542 -39.13417 -36.79395 -35.18765 -33.19513 -32.29032 -31.33434 -31.11319 -27.66493 -26.98531 -24.43682 -22.85333 -21.47764 -20.58943 -19.96137 -19.50387 -17.37944 -16.98829 -16.77502 -16.01641 -15.59401 -15.14876 -14.68078 -14.33937 -13.98556 -13.66675 -13.62366 -13.27482 -12.84193 -12.75060 -12.61922 -12.22956 -12.04978 -11.93587 -11.82767 -11.50751 -11.19758 -11.02881 -10.98301 -10.73343 -10.71455 -10.06681 -9.90041 -9.85243 -9.27633 -9.13952 -9.02352 -8.75572 -8.08679 -6.29342 -4.33377 2.62150 3.15064 3.22031 3.29888 3.36748 3.44774 3.79100 4.26966 4.27771 4.31299 4.57077 4.85643 4.93736 5.03571 5.07000 5.14972 5.42216 5.46553 5.52852 5.58315 5.71672 5.82448 5.92185 5.98707 6.02754 6.12664 6.18821 6.57657 6.71893 6.85913 6.91060 6.93683 7.14454 7.22202 7.29018 7.50325 8.06210 8.30665 8.49488 8.70782 8.88496 9.32691 10.82316 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031164 B = 0.005045 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.253023 B = 5548.205437 C = 5746.304391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.698 5.698 14 C 0.502 3.498 15 O -0.554 6.554 16 C -0.126 4.126 17 H 0.109 0.891 18 C -0.144 4.144 19 C 0.151 3.849 20 H 0.090 0.910 21 C -0.133 4.133 22 C -0.155 4.155 23 C 0.515 3.485 24 O -0.547 6.547 25 N -0.710 5.710 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 6.394 11.374 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.346 5.346 14 C 0.287 3.713 15 O -0.434 6.434 16 C -0.148 4.148 17 H 0.126 0.874 18 C -0.201 4.201 19 C 0.045 3.955 20 H 0.108 0.892 21 C -0.171 4.171 22 C -0.196 4.196 23 C 0.300 3.700 24 O -0.425 6.425 25 N -0.365 5.365 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -11.072 6.063 10.655 16.519 hybrid contribution 0.177 -0.090 -0.837 0.860 sum -10.896 5.973 9.819 15.836 Atomic orbital electron populations 1.21901 0.97477 0.98914 1.01830 1.22069 0.93600 0.99480 1.01229 1.19173 0.95503 0.89090 0.82833 0.93100 1.21002 0.88693 1.51870 0.95444 0.90399 1.24937 0.94860 0.93653 0.98800 1.69883 1.09778 1.48183 1.24549 0.86902 0.81257 0.79564 0.82255 1.19919 1.21206 1.18385 1.46622 1.14380 1.55444 1.18149 1.20369 0.82870 0.79339 0.88692 1.90668 1.50887 1.60374 1.41479 1.21717 0.97504 1.00181 0.95397 0.87351 1.21792 1.02908 0.98628 0.96800 1.21447 0.87222 0.88475 0.98344 0.89212 1.22805 0.95054 1.01560 0.97674 1.22335 0.97903 0.96894 1.02433 1.20868 0.81905 0.87357 0.79823 1.90738 1.33093 1.51706 1.66937 1.46342 1.20186 1.24948 1.45039 0.93066 0.95067 0.93375 0.92121 0.93060 0.92200 0.77369 0.91571 0.92036 0.91556 0.89359 0.89059 0.87970 0.88267 0.74340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.53 37.16 0.32 -2.42 16 2 C -0.12 -2.59 5.59 -26.73 -0.15 -2.74 16 3 C 0.24 5.26 1.89 -69.09 -0.13 5.13 16 4 H 0.05 1.25 4.73 -51.93 -0.25 1.01 16 5 C -0.53 -13.69 9.05 -34.44 -0.31 -14.00 16 6 H 0.08 2.12 8.06 -52.48 -0.42 1.70 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 9 Si 0.87 21.04 26.99 -169.99 -4.59 16.46 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.26 -6.17 6.82 56.52 0.39 -5.78 16 13 N -0.70 -12.56 4.92 -54.94 -0.27 -12.83 16 14 C 0.50 8.18 5.56 -10.98 -0.06 8.12 16 15 O -0.55 -10.71 12.02 5.56 0.07 -10.64 16 16 C -0.13 -1.40 2.61 -91.77 -0.24 -1.64 16 17 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.14 -1.42 8.66 37.16 0.32 -1.09 16 19 C 0.15 1.60 2.73 -67.01 -0.18 1.42 16 20 H 0.09 1.03 7.99 -51.93 -0.42 0.62 16 21 C -0.13 -0.95 6.53 -25.10 -0.16 -1.11 16 22 C -0.16 -1.33 6.86 -26.74 -0.18 -1.51 16 23 C 0.51 6.87 8.43 -10.86 -0.09 6.77 16 24 O -0.55 -9.64 18.03 5.56 0.10 -9.54 16 25 N -0.71 -9.17 4.61 -52.76 -0.24 -9.41 16 26 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.88 5.63 -51.93 -0.29 0.59 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.39 6.26 8.01 -40.82 -0.33 5.93 16 33 H 0.07 0.51 6.23 -51.93 -0.32 0.18 16 34 H 0.06 0.71 7.48 -51.93 -0.39 0.32 16 35 H 0.07 0.64 7.57 -51.92 -0.39 0.24 16 36 H 0.09 0.54 5.96 -51.93 -0.31 0.23 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.42 6.18 7.89 -40.82 -0.32 5.86 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -31.89 316.20 -6.33 -38.21 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.96 Total: 8.69 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.97 Total: -0.96 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.26 Total: -46.98 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.59 Total: 16.46 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.89 -6.33 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599761035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.396 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds