Wall clock time and date at job start Mon Mar 30 2020 01:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47290 * 2 1 4 4 H 1.09003 * 109.46934 * 305.69830 * 3 2 1 5 5 C 1.50693 * 109.47397 * 185.69995 * 3 2 1 6 6 H 1.08004 * 119.99720 * 275.00296 * 5 3 2 7 7 C 1.37873 * 120.00156 * 95.00231 * 5 3 2 8 8 N 1.31523 * 119.99922 * 184.83342 * 7 5 3 9 9 Si 1.86796 * 120.00181 * 4.83085 * 7 5 3 10 10 H 1.48501 * 109.47238 * 84.85936 * 9 7 5 11 11 H 1.48500 * 109.47246 * 204.86400 * 9 7 5 12 12 H 1.48507 * 109.46943 * 324.86139 * 9 7 5 13 13 N 1.46498 * 109.47176 * 65.69331 * 3 2 1 14 14 C 1.34777 * 120.00284 * 275.00689 * 13 3 2 15 15 O 1.21281 * 120.00170 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99996 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47186 * 59.99365 * 16 14 13 18 18 C 1.53000 * 109.46909 * 299.99618 * 16 14 13 19 19 C 1.52999 * 109.47263 * 179.97438 * 16 14 13 20 20 H 1.09002 * 110.21510 * 304.52573 * 19 16 14 21 21 C 1.54474 * 110.24666 * 182.50183 * 19 16 14 22 22 C 1.54633 * 101.76677 * 215.58566 * 21 19 16 23 23 C 1.51286 * 104.19333 * 24.79817 * 22 21 19 24 24 O 1.21279 * 124.94524 * 164.01695 * 23 22 21 25 25 N 1.34420 * 110.11470 * 343.74715 * 23 22 21 26 26 H 1.08999 * 109.46913 * 60.00226 * 1 2 3 27 27 H 1.09004 * 109.46580 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47188 * 299.99839 * 1 2 3 29 29 H 1.09004 * 109.47213 * 239.99889 * 2 1 3 30 30 H 1.08999 * 109.47396 * 119.99994 * 2 1 3 31 31 H 0.96994 * 119.99670 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99973 * 94.99884 * 13 3 2 33 33 H 1.09007 * 109.47080 * 179.97438 * 18 16 14 34 34 H 1.09001 * 109.47511 * 299.99933 * 18 16 14 35 35 H 1.09007 * 109.47117 * 60.00268 * 18 16 14 36 36 H 1.09004 * 110.96849 * 333.70271 * 21 19 16 37 37 H 1.08994 * 110.96906 * 97.42935 * 21 19 16 38 38 H 1.08997 * 110.48612 * 266.12434 * 22 21 19 39 39 H 1.09000 * 110.48997 * 143.47131 * 22 21 19 40 40 H 0.97001 * 124.34867 * 179.61283 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1411 6 1 4.1651 1.3333 0.7328 7 6 4.1156 1.5894 -1.3858 8 7 5.4204 1.4964 -1.5220 9 14 3.0416 1.9171 -2.8786 10 1 2.7751 3.3741 -2.9864 11 1 3.7399 1.4496 -4.1030 12 1 1.7560 1.1882 -2.7331 13 7 1.6669 2.0924 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3341 2.6308 0.4662 16 6 0.0669 3.3268 2.6853 17 1 0.7607 4.1412 2.8937 18 6 0.1235 2.3049 3.8226 19 6 -1.3533 3.8842 2.5701 20 1 -1.4268 4.5537 1.7130 21 6 -1.7424 4.6281 3.8668 22 6 -3.2467 4.2899 3.9850 23 6 -3.3962 2.9921 3.2219 24 8 -4.3503 2.2473 3.2983 25 7 -2.3204 2.7877 2.4424 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8250 1.5984 -2.3976 32 1 2.2949 2.1150 1.9978 33 1 -0.1539 2.7882 4.7594 34 1 -0.5703 1.4905 3.6142 35 1 1.1355 1.9082 3.9045 36 1 -1.1871 4.2400 4.7207 37 1 -1.5907 5.7022 3.7608 38 1 -3.8509 5.0732 3.5275 39 1 -3.5259 4.1524 5.0297 40 1 -2.1990 2.0148 1.8689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599761035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:28 Heat of formation + Delta-G solvation = -115.585187 kcal Electronic energy + Delta-G solvation = -21566.547625 eV Core-core repulsion = 18379.405884 eV Total energy + Delta-G solvation = -3187.141740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.76607 -40.42668 -37.93696 -36.78811 -34.51228 -34.07841 -32.54347 -32.09192 -29.43361 -27.85663 -25.51680 -24.54020 -22.55609 -21.53827 -21.41285 -20.84960 -19.10927 -18.04938 -17.73825 -17.42407 -17.14198 -16.43296 -15.99230 -15.71325 -15.20404 -14.89163 -14.79190 -14.51130 -14.32574 -13.91139 -13.80125 -13.69819 -13.39511 -13.08891 -12.95068 -12.71921 -12.61206 -12.46274 -12.25514 -12.02255 -11.89156 -11.70555 -11.67802 -11.20115 -10.89102 -10.83841 -10.47739 -10.03459 -9.65232 -8.39422 -6.44560 1.27344 1.32677 1.42583 1.63213 1.86918 2.25785 2.49760 2.50686 3.02839 3.48152 3.52675 3.83893 3.97929 4.13773 4.29715 4.30793 4.35736 4.39684 4.49188 4.58048 4.79868 4.81964 4.89068 4.90484 4.96357 5.09035 5.19398 5.21304 5.24153 5.26783 5.40996 5.42913 5.53740 5.80013 5.88977 6.13443 6.17357 6.61560 6.97741 7.22013 7.27052 7.54802 8.75649 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031164 B = 0.005045 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.253023 B = 5548.205437 C = 5746.304391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.243 3.757 4 H 0.030 0.970 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.035 3.965 8 N -0.930 5.930 9 Si 0.924 3.076 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.258 1.258 13 N -0.701 5.701 14 C 0.499 3.501 15 O -0.585 6.585 16 C -0.113 4.113 17 H 0.140 0.860 18 C -0.141 4.141 19 C 0.145 3.855 20 H 0.080 0.920 21 C -0.117 4.117 22 C -0.145 4.145 23 C 0.503 3.497 24 O -0.601 6.601 25 N -0.714 5.714 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.269 0.731 32 H 0.404 0.596 33 H 0.097 0.903 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.096 7.963 13.271 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.048 0.952 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.750 3.250 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.183 1.183 13 N -0.350 5.350 14 C 0.286 3.714 15 O -0.467 6.467 16 C -0.134 4.134 17 H 0.158 0.842 18 C -0.198 4.198 19 C 0.040 3.960 20 H 0.098 0.902 21 C -0.154 4.154 22 C -0.185 4.185 23 C 0.291 3.709 24 O -0.483 6.483 25 N -0.367 5.367 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.239 0.761 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.950 7.668 12.584 18.972 hybrid contribution 0.448 -0.597 -1.392 1.580 sum -11.502 7.071 11.191 17.537 Atomic orbital electron populations 1.21763 0.95933 1.00045 1.01194 1.21982 0.94862 0.98373 1.00960 1.18834 0.93039 0.90038 0.84249 0.95245 1.21229 0.90449 1.50136 0.94456 0.92527 1.25564 0.95632 0.94087 1.01275 1.69980 1.11225 1.50512 1.25196 0.86091 0.79855 0.79256 0.79820 1.19886 1.20716 1.18267 1.46343 1.15684 1.55981 1.16995 1.21283 0.81487 0.78353 0.90266 1.90661 1.51534 1.61208 1.43254 1.21733 0.98439 1.00866 0.92400 0.84208 1.21809 1.02675 0.97880 0.97463 1.21662 0.86291 0.87798 1.00271 0.90183 1.22867 0.93669 1.02949 0.95901 1.22381 0.99394 0.94108 1.02641 1.21765 0.80942 0.88449 0.79719 1.90700 1.35045 1.53873 1.68710 1.46563 1.20846 1.24908 1.44337 0.94829 0.93017 0.92853 0.93605 0.92128 0.92125 0.76080 0.88393 0.94048 0.91261 0.87468 0.85981 0.86456 0.86494 0.76087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 8.53 71.98 0.61 -4.32 16 2 C -0.12 -5.05 5.59 30.60 0.17 -4.88 16 3 C 0.24 10.75 1.89 44.24 0.08 10.84 16 4 H 0.03 1.45 4.73 -2.39 -0.01 1.44 16 5 C -0.52 -27.24 9.05 25.60 0.23 -27.01 16 6 H 0.06 3.13 8.06 -2.91 -0.02 3.10 16 7 C 0.03 1.91 5.47 84.65 0.46 2.37 16 8 N -0.93 -54.43 13.96 21.45 0.30 -54.13 16 9 Si 0.92 43.92 26.99 68.60 1.85 45.77 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.26 -12.10 6.82 99.48 0.68 -11.42 16 13 N -0.70 -24.46 4.92 -446.11 -2.20 -26.65 16 14 C 0.50 15.49 5.56 87.66 0.49 15.98 16 15 O -0.59 -22.27 12.02 -3.03 -0.04 -22.31 16 16 C -0.11 -2.15 2.61 -11.54 -0.03 -2.18 16 17 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 18 C -0.14 -2.30 8.66 71.98 0.62 -1.68 16 19 C 0.15 2.64 2.73 45.44 0.12 2.77 16 20 H 0.08 1.65 7.99 -2.39 -0.02 1.63 16 21 C -0.12 -1.08 6.53 31.65 0.21 -0.87 16 22 C -0.15 -1.96 6.86 30.59 0.21 -1.75 16 23 C 0.50 12.79 8.43 87.90 0.74 13.53 16 24 O -0.60 -21.33 18.03 -3.03 -0.05 -21.38 16 25 N -0.71 -17.62 4.61 -439.43 -2.03 -19.65 16 26 H 0.03 1.35 7.89 -2.39 -0.02 1.33 16 27 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.05 1.92 5.63 -2.39 -0.01 1.90 16 29 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.40 12.29 8.01 -92.70 -0.74 11.54 16 33 H 0.10 1.01 6.23 -2.38 -0.01 1.00 16 34 H 0.04 0.86 7.48 -2.39 -0.02 0.84 16 35 H 0.07 1.11 7.57 -2.38 -0.02 1.09 16 36 H 0.11 0.65 5.96 -2.38 -0.01 0.63 16 37 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.40 11.94 7.89 -92.71 -0.73 11.21 16 Total: -1.00 -72.13 316.20 1.32 -70.81 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.44 Total: 24.76 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 3.93 Total: 2.79 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -3.92 Total: -100.43 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.09 Total: -43.69 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.85 Total: 45.77 kcal Total: -72.13 1.32 -70.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599761035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.774 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds