Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46799 * 2 1 4 4 N 1.46506 * 109.46626 * 119.99540 * 2 1 3 5 5 C 1.46496 * 120.00525 * 303.95387 * 4 2 1 6 6 C 1.50699 * 109.47246 * 270.00493 * 5 4 2 7 7 H 1.08001 * 119.99972 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00043 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00117 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46775 * 60.00172 * 10 8 6 12 12 H 1.48505 * 109.47115 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46879 * 300.00103 * 10 8 6 14 14 C 1.34775 * 119.99470 * 123.95459 * 4 2 1 15 15 O 1.21279 * 120.00141 * 184.15847 * 14 4 2 16 16 C 1.50705 * 120.00342 * 4.16291 * 14 4 2 17 17 H 1.09004 * 109.32564 * 324.19674 * 16 14 4 18 18 C 1.53077 * 109.39935 * 83.97894 * 16 14 4 19 19 C 1.53346 * 108.45182 * 169.05032 * 18 16 14 20 20 C 1.52924 * 108.67408 * 292.45158 * 19 18 16 21 21 N 1.45748 * 110.48871 * 50.75218 * 20 19 18 22 22 C 1.33357 * 124.10759 * 340.95216 * 21 20 19 23 23 O 1.21283 * 118.24661 * 182.22000 * 22 21 20 24 24 H 1.09001 * 109.47670 * 295.42181 * 1 2 3 25 25 H 1.09004 * 109.47406 * 55.42058 * 1 2 3 26 26 H 1.08998 * 109.47532 * 175.41925 * 1 2 3 27 27 H 1.08994 * 109.46870 * 239.99564 * 2 1 3 28 28 H 1.09011 * 109.46755 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47363 * 299.99179 * 3 2 1 30 30 H 1.08994 * 109.47765 * 60.00112 * 3 2 1 31 31 H 1.09006 * 109.46865 * 29.99889 * 5 4 2 32 32 H 1.09001 * 109.47013 * 149.99893 * 5 4 2 33 33 H 0.97006 * 120.00555 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.67089 * 49.29871 * 18 16 14 35 35 H 1.08995 * 109.67276 * 288.79971 * 18 16 14 36 36 H 1.08994 * 109.60627 * 52.20570 * 19 18 16 37 37 H 1.09006 * 109.60038 * 172.53326 * 19 18 16 38 38 H 1.08998 * 109.29839 * 171.06886 * 20 19 18 39 39 H 1.08999 * 109.29902 * 290.64968 * 20 19 18 40 40 H 0.97001 * 117.94691 * 160.92433 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.5943 -0.2426 2.5251 6 6 2.5600 0.7948 3.0373 7 1 3.4053 1.0904 2.4335 8 6 2.3645 1.3664 4.2766 9 7 1.3349 1.0067 5.0116 10 14 3.5620 2.6517 4.9118 11 1 3.5844 3.8095 3.9822 12 1 3.1315 3.1068 6.2582 13 1 4.9216 2.0610 4.9996 14 6 2.8574 -1.7381 1.0743 15 8 3.2020 -2.3569 2.0587 16 6 3.3678 -2.1404 -0.2855 17 1 2.5827 -1.9857 -1.0257 18 6 4.5833 -1.2829 -0.6465 19 6 5.2486 -1.8834 -1.8908 20 6 5.8500 -3.2392 -1.5183 21 7 4.8604 -4.0673 -0.8406 22 6 3.7552 -3.5920 -0.2653 23 8 3.0239 -4.3730 0.3056 24 1 -0.3634 0.4411 0.9281 25 1 -0.3634 0.5833 -0.8461 26 1 -0.3634 -1.0243 -0.0821 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.5961 0.1906 2.4611 32 1 1.5785 -1.0926 3.2072 33 1 1.1971 1.4092 5.8834 34 1 5.2904 -1.2810 0.1830 35 1 4.2629 -0.2627 -0.8579 36 1 4.5038 -2.0169 -2.6753 37 1 6.0352 -1.2160 -2.2430 38 1 6.1846 -3.7458 -2.4236 39 1 6.7016 -3.0857 -0.8556 40 1 5.0153 -5.0242 -0.8061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601027738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = -77.457199 kcal Electronic energy + Delta-G solvation = -21927.072574 eV Core-core repulsion = 18741.584187 eV Total energy + Delta-G solvation = -3185.488387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63075 -38.56548 -36.41014 -35.83487 -33.21747 -32.60558 -30.79737 -29.94514 -27.29655 -26.73649 -24.92629 -23.08861 -22.45042 -21.31307 -19.51974 -17.99546 -17.32455 -16.84843 -16.43980 -15.99544 -15.15080 -14.88400 -14.41641 -14.25134 -13.88648 -13.65854 -13.56486 -13.39316 -13.08876 -12.49707 -12.28440 -12.08941 -11.68042 -11.53055 -11.40456 -11.33140 -11.22533 -11.04295 -10.87365 -10.81971 -10.53221 -10.32285 -9.99797 -9.55342 -9.51568 -9.02685 -8.81180 -8.38763 -7.60094 -6.00165 -4.03952 2.79544 3.20916 3.32010 3.37448 3.38784 3.51228 3.95874 4.45728 4.53396 4.61997 4.67821 4.77729 5.08341 5.13334 5.25658 5.33621 5.37394 5.46529 5.56937 5.60541 5.66863 5.72456 5.82818 6.03040 6.13014 6.17023 6.26769 6.36762 6.62504 6.84531 6.95503 7.15119 7.36594 7.54612 7.61216 7.96642 8.28749 8.37899 8.47419 8.94477 9.14099 9.59858 11.07946 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.006190 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.942745 B = 4522.302186 C = 4722.868665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 C -0.159 4.159 4 N -0.590 5.590 5 C 0.245 3.755 6 C -0.521 4.521 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.525 3.475 15 O -0.524 6.524 16 C -0.129 4.129 17 H 0.119 0.881 18 C -0.114 4.114 19 C -0.134 4.134 20 C 0.110 3.890 21 N -0.725 5.725 22 C 0.538 3.462 23 O -0.531 6.531 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -2.310 -18.026 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.322 5.322 5 C 0.127 3.873 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.309 3.691 15 O -0.400 6.400 16 C -0.154 4.154 17 H 0.136 0.864 18 C -0.152 4.152 19 C -0.172 4.172 20 C -0.014 4.014 21 N -0.378 5.378 22 C 0.323 3.677 23 O -0.406 6.406 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.595 -2.756 -16.984 18.093 hybrid contribution 0.787 0.507 0.326 0.991 sum 6.382 -2.249 -16.658 17.980 Atomic orbital electron populations 1.22174 0.95403 1.01771 1.02867 1.21055 0.94407 0.93967 0.87933 1.22191 1.01125 0.95830 1.02511 1.48223 1.45386 1.29827 1.08756 1.19274 0.95378 0.95617 0.77080 1.21398 1.10694 1.21774 1.02083 0.92404 1.24927 0.95550 0.97157 0.96506 1.69924 1.28570 1.43108 1.11726 0.86620 0.81552 0.81588 0.78005 1.20287 1.21255 1.20300 1.19449 0.79994 0.80921 0.88733 1.90712 1.57450 1.52648 1.39148 1.21516 1.00571 0.93198 1.00069 0.86392 1.21637 0.95872 0.99325 0.98363 1.21885 1.01306 0.95902 0.98102 1.21373 0.91159 0.91996 0.96889 1.45362 1.22951 1.11342 1.58182 1.19483 0.80704 0.90145 0.77348 1.90774 1.50553 1.57545 1.41692 0.90930 0.92220 0.92856 0.90906 0.92837 0.93215 0.89892 0.94554 0.93931 0.92728 0.90222 0.89623 0.90826 0.89388 0.90666 0.91678 0.76629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.20 37.16 0.34 -2.14 16 2 C 0.13 2.12 3.03 -67.93 -0.21 1.91 16 3 C -0.16 -2.47 8.58 37.15 0.32 -2.16 16 4 N -0.59 -12.62 2.39 -167.47 -0.40 -13.02 16 5 C 0.25 6.44 4.73 -5.20 -0.02 6.42 16 6 C -0.52 -14.41 7.84 -34.44 -0.27 -14.68 16 7 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 10 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.52 11.57 6.49 -10.98 -0.07 11.50 16 15 O -0.52 -14.34 15.27 -12.31 -0.19 -14.53 16 16 C -0.13 -2.07 1.94 -93.10 -0.18 -2.25 16 17 H 0.12 1.60 6.09 -51.93 -0.32 1.28 16 18 C -0.11 -1.42 5.29 -26.51 -0.14 -1.56 16 19 C -0.13 -1.10 6.02 -26.59 -0.16 -1.26 16 20 C 0.11 0.92 7.17 -4.49 -0.03 0.89 16 21 N -0.72 -8.91 5.45 -61.36 -0.33 -9.24 16 22 C 0.54 9.22 6.90 -11.83 -0.08 9.14 16 23 O -0.53 -11.67 16.65 -12.31 -0.20 -11.87 16 24 H 0.07 1.26 6.34 -51.93 -0.33 0.93 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.96 5.19 -51.93 -0.27 0.69 16 28 H 0.05 0.83 7.46 -51.92 -0.39 0.44 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 31 H 0.04 0.96 6.14 -51.93 -0.32 0.64 16 32 H 0.04 1.30 7.37 -51.93 -0.38 0.92 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.09 0.98 7.30 -51.93 -0.38 0.60 16 36 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.40 4.36 8.80 -40.82 -0.36 4.00 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -36.49 319.13 -7.22 -43.71 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.01 Total: 1.94 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -0.60 Total: 7.43 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.00 Total: -48.18 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.39 Total: -26.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.49 -7.22 -43.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.746 kcal (2) G-P(sol) polarization free energy of solvation -36.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds