Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46799 * 2 1 4 4 N 1.46506 * 109.46626 * 119.99540 * 2 1 3 5 5 C 1.46496 * 120.00525 * 303.95387 * 4 2 1 6 6 C 1.50699 * 109.47246 * 270.00493 * 5 4 2 7 7 H 1.08001 * 119.99972 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00043 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00117 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46775 * 60.00172 * 10 8 6 12 12 H 1.48505 * 109.47115 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46879 * 300.00103 * 10 8 6 14 14 C 1.34775 * 119.99470 * 123.95459 * 4 2 1 15 15 O 1.21279 * 120.00141 * 184.15847 * 14 4 2 16 16 C 1.50705 * 120.00342 * 4.16291 * 14 4 2 17 17 H 1.09004 * 109.32564 * 324.19674 * 16 14 4 18 18 C 1.53077 * 109.39935 * 83.97894 * 16 14 4 19 19 C 1.53346 * 108.45182 * 169.05032 * 18 16 14 20 20 C 1.52924 * 108.67408 * 292.45158 * 19 18 16 21 21 N 1.45748 * 110.48871 * 50.75218 * 20 19 18 22 22 C 1.33357 * 124.10759 * 340.95216 * 21 20 19 23 23 O 1.21283 * 118.24661 * 182.22000 * 22 21 20 24 24 H 1.09001 * 109.47670 * 295.42181 * 1 2 3 25 25 H 1.09004 * 109.47406 * 55.42058 * 1 2 3 26 26 H 1.08998 * 109.47532 * 175.41925 * 1 2 3 27 27 H 1.08994 * 109.46870 * 239.99564 * 2 1 3 28 28 H 1.09011 * 109.46755 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47363 * 299.99179 * 3 2 1 30 30 H 1.08994 * 109.47765 * 60.00112 * 3 2 1 31 31 H 1.09006 * 109.46865 * 29.99889 * 5 4 2 32 32 H 1.09001 * 109.47013 * 149.99893 * 5 4 2 33 33 H 0.97006 * 120.00555 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.67089 * 49.29871 * 18 16 14 35 35 H 1.08995 * 109.67276 * 288.79971 * 18 16 14 36 36 H 1.08994 * 109.60627 * 52.20570 * 19 18 16 37 37 H 1.09006 * 109.60038 * 172.53326 * 19 18 16 38 38 H 1.08998 * 109.29839 * 171.06886 * 20 19 18 39 39 H 1.08999 * 109.29902 * 290.64968 * 20 19 18 40 40 H 0.97001 * 117.94691 * 160.92433 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.5943 -0.2426 2.5251 6 6 2.5600 0.7948 3.0373 7 1 3.4053 1.0904 2.4335 8 6 2.3645 1.3664 4.2766 9 7 1.3349 1.0067 5.0116 10 14 3.5620 2.6517 4.9118 11 1 3.5844 3.8095 3.9822 12 1 3.1315 3.1068 6.2582 13 1 4.9216 2.0610 4.9996 14 6 2.8574 -1.7381 1.0743 15 8 3.2020 -2.3569 2.0587 16 6 3.3678 -2.1404 -0.2855 17 1 2.5827 -1.9857 -1.0257 18 6 4.5833 -1.2829 -0.6465 19 6 5.2486 -1.8834 -1.8908 20 6 5.8500 -3.2392 -1.5183 21 7 4.8604 -4.0673 -0.8406 22 6 3.7552 -3.5920 -0.2653 23 8 3.0239 -4.3730 0.3056 24 1 -0.3634 0.4411 0.9281 25 1 -0.3634 0.5833 -0.8461 26 1 -0.3634 -1.0243 -0.0821 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.5961 0.1906 2.4611 32 1 1.5785 -1.0926 3.2072 33 1 1.1971 1.4092 5.8834 34 1 5.2904 -1.2810 0.1830 35 1 4.2629 -0.2627 -0.8579 36 1 4.5038 -2.0169 -2.6753 37 1 6.0352 -1.2160 -2.2430 38 1 6.1846 -3.7458 -2.4236 39 1 6.7016 -3.0857 -0.8556 40 1 5.0153 -5.0242 -0.8061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601027738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = -104.659511 kcal Electronic energy + Delta-G solvation = -21928.252155 eV Core-core repulsion = 18741.584187 eV Total energy + Delta-G solvation = -3186.667968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98121 -40.10507 -37.67137 -37.38454 -35.02562 -34.05560 -32.43064 -31.08968 -29.19596 -27.99890 -26.13021 -24.83515 -23.66168 -22.73777 -20.71277 -19.37807 -18.71689 -18.58425 -18.08920 -17.37690 -16.76129 -16.26298 -15.96026 -15.71593 -15.15896 -14.96237 -14.81944 -14.66359 -14.33688 -14.23391 -13.82307 -13.37768 -13.31535 -13.04109 -12.80711 -12.74706 -12.48075 -12.44788 -12.27933 -12.19553 -12.07263 -11.93801 -11.66202 -11.48293 -10.82386 -10.60265 -10.55161 -10.04422 -9.44005 -8.18475 -6.31342 1.36348 1.41163 1.46112 1.48518 1.73313 2.17757 2.39547 2.51983 3.11150 3.37384 3.60266 3.74929 3.78175 3.95968 4.15638 4.16844 4.30369 4.44737 4.58109 4.73037 4.80383 4.84928 4.87348 4.97659 5.02812 5.09226 5.09633 5.13387 5.22679 5.32095 5.44105 5.62073 5.66425 5.86916 5.88826 6.10675 6.26592 6.72125 6.79875 7.18558 7.31012 7.47401 8.89349 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.006190 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.942745 B = 4522.302186 C = 4722.868665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.121 3.879 3 C -0.152 4.152 4 N -0.591 5.591 5 C 0.262 3.738 6 C -0.525 4.525 7 H 0.062 0.938 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.255 1.255 12 H -0.283 1.283 13 H -0.279 1.279 14 C 0.511 3.489 15 O -0.594 6.594 16 C -0.117 4.117 17 H 0.149 0.851 18 C -0.112 4.112 19 C -0.124 4.124 20 C 0.099 3.901 21 N -0.709 5.709 22 C 0.528 3.472 23 O -0.595 6.595 24 H 0.038 0.962 25 H 0.102 0.898 26 H 0.050 0.950 27 H 0.116 0.884 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.029 0.971 32 H -0.017 1.017 33 H 0.265 0.735 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 -0.611 -22.025 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 C -0.210 4.210 4 N -0.322 5.322 5 C 0.141 3.859 6 C -0.564 4.564 7 H 0.080 0.920 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.179 1.179 12 H -0.209 1.209 13 H -0.204 1.204 14 C 0.298 3.702 15 O -0.475 6.475 16 C -0.141 4.141 17 H 0.166 0.834 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.024 4.024 21 N -0.360 5.360 22 C 0.314 3.686 23 O -0.476 6.476 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.001 0.999 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.592 -1.020 -21.082 22.430 hybrid contribution 0.179 -0.064 1.529 1.541 sum 7.771 -1.085 -19.553 21.068 Atomic orbital electron populations 1.22164 0.94643 1.02134 1.02947 1.21543 0.95142 0.94550 0.86884 1.22124 1.01163 0.94980 1.02731 1.48268 1.45116 1.30165 1.08669 1.18691 0.95203 0.92935 0.79065 1.21634 1.10705 1.21622 1.02411 0.92022 1.25888 0.97371 0.99520 0.96780 1.70075 1.30578 1.44591 1.12149 0.85505 0.78556 0.79236 0.77757 1.17916 1.20879 1.20415 1.20575 0.79028 0.79915 0.90661 1.90666 1.59830 1.54798 1.42157 1.21489 1.02952 0.93384 0.96306 0.83359 1.21727 0.93795 0.99785 0.99697 1.21944 1.02487 0.95694 0.96023 1.21818 0.89958 0.92315 0.98299 1.45389 1.21801 1.12378 1.56477 1.19765 0.81464 0.90196 0.77139 1.90745 1.53111 1.58945 1.44790 0.94239 0.87934 0.93109 0.86690 0.92722 0.88728 0.93829 0.95343 0.99923 0.92664 0.92907 0.88044 0.88706 0.85955 0.86400 0.91297 0.75924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 9.20 71.98 0.66 -4.00 16 2 C 0.12 3.70 3.03 44.99 0.14 3.83 16 3 C -0.15 -4.37 8.58 71.98 0.62 -3.75 16 4 N -0.59 -26.05 2.39 -802.15 -1.92 -27.97 16 5 C 0.26 14.68 4.73 85.63 0.41 15.09 16 6 C -0.53 -30.16 7.84 25.60 0.20 -29.96 16 7 H 0.06 3.41 7.60 -2.91 -0.02 3.39 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -58.09 13.29 21.44 0.28 -57.80 16 10 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 11 H -0.25 -10.95 7.11 99.48 0.71 -10.25 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 C 0.51 23.32 6.49 87.66 0.57 23.89 16 15 O -0.59 -34.86 15.27 14.06 0.21 -34.65 16 16 C -0.12 -3.62 1.94 -12.40 -0.02 -3.64 16 17 H 0.15 3.54 6.09 -2.39 -0.01 3.53 16 18 C -0.11 -2.45 5.29 30.74 0.16 -2.29 16 19 C -0.12 -1.37 6.02 30.68 0.18 -1.18 16 20 C 0.10 1.22 7.17 86.50 0.62 1.84 16 21 N -0.71 -16.05 5.45 -467.23 -2.55 -18.60 16 22 C 0.53 17.97 6.90 87.74 0.61 18.58 16 23 O -0.60 -27.29 16.65 14.04 0.23 -27.06 16 24 H 0.04 1.40 6.34 -2.39 -0.02 1.38 16 25 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.12 2.56 5.19 -2.39 -0.01 2.55 16 28 H 0.05 1.54 7.46 -2.38 -0.02 1.52 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.61 6.92 -2.39 -0.02 1.59 16 31 H 0.03 1.62 6.14 -2.38 -0.01 1.61 16 32 H -0.02 -1.17 7.37 -2.39 -0.02 -1.19 16 33 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 34 H 0.05 1.45 8.09 -2.39 -0.02 1.43 16 35 H 0.10 1.90 7.30 -2.39 -0.02 1.88 16 36 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 37 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.40 8.28 8.80 -92.71 -0.82 7.47 16 Total: -1.00 -89.79 319.13 3.13 -86.66 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.23 Total: 13.22 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 4.60 Total: 19.02 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -4.18 Total: -104.37 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: 0.45 Total: -61.71 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -89.79 3.13 -86.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.997 kcal (2) G-P(sol) polarization free energy of solvation -89.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds