Wall clock time and date at job start Mon Mar 30 2020 01:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47049 * 2 1 4 4 N 1.46498 * 109.47005 * 119.99794 * 2 1 3 5 5 C 1.46502 * 120.00138 * 118.20348 * 4 2 1 6 6 C 1.50696 * 109.47017 * 264.30757 * 5 4 2 7 7 H 1.08006 * 120.00156 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00325 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99443 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00359 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47077 * 180.02562 * 10 8 6 12 12 H 1.48501 * 109.46914 * 300.00095 * 10 8 6 13 13 H 1.48496 * 109.47422 * 60.00044 * 10 8 6 14 14 C 1.34780 * 120.00269 * 298.19925 * 4 2 1 15 15 O 1.21280 * 119.99871 * 4.64395 * 14 4 2 16 16 C 1.50694 * 120.00294 * 184.63684 * 14 4 2 17 17 H 1.09005 * 109.40003 * 311.41767 * 16 14 4 18 18 C 1.53069 * 109.40453 * 191.58696 * 16 14 4 19 19 C 1.53345 * 108.42603 * 190.97571 * 18 16 14 20 20 C 1.52915 * 108.67719 * 67.53123 * 19 18 16 21 21 N 1.45760 * 110.48433 * 309.24262 * 20 19 18 22 22 C 1.33229 * 124.07017 * 19.16274 * 21 20 19 23 23 O 1.21289 * 118.15797 * 177.70407 * 22 21 20 24 24 H 1.09007 * 109.47137 * 305.57046 * 1 2 3 25 25 H 1.09001 * 109.47046 * 65.57040 * 1 2 3 26 26 H 1.08994 * 109.47213 * 185.57414 * 1 2 3 27 27 H 1.08993 * 109.47412 * 240.00129 * 2 1 3 28 28 H 1.08999 * 109.47097 * 183.67181 * 3 2 1 29 29 H 1.09000 * 109.47307 * 303.67194 * 3 2 1 30 30 H 1.09003 * 109.46911 * 63.67156 * 3 2 1 31 31 H 1.08991 * 109.47115 * 144.30523 * 5 4 2 32 32 H 1.08999 * 109.46790 * 24.30542 * 5 4 2 33 33 H 0.96998 * 120.00345 * 359.97438 * 9 8 6 34 34 H 1.09005 * 109.67336 * 310.70619 * 18 16 14 35 35 H 1.08992 * 109.67679 * 71.20102 * 18 16 14 36 36 H 1.09004 * 109.60052 * 187.29067 * 19 18 16 37 37 H 1.09001 * 109.60056 * 307.60324 * 19 18 16 38 38 H 1.08997 * 109.30270 * 69.55629 * 20 19 18 39 39 H 1.09004 * 109.30146 * 189.14690 * 20 19 18 40 40 H 0.97003 * 117.94188 * 199.07299 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8278 -1.9043 1.0622 6 6 1.9399 -3.1160 1.1822 7 1 0.8787 -2.9942 1.3418 8 6 2.4821 -4.3801 1.0871 9 7 3.7742 -4.5283 0.8923 10 14 1.3815 -5.8821 1.2351 11 1 2.2020 -7.1123 1.0995 12 1 0.7131 -5.8771 2.5612 13 1 0.3544 -5.8508 0.1631 14 6 1.7229 -0.2093 2.4200 15 8 0.9840 0.7456 2.5339 16 6 2.3107 -0.8578 3.6467 17 1 2.1706 -1.9372 3.5881 18 6 1.6045 -0.3203 4.8939 19 6 2.3904 -0.7748 6.1297 20 6 3.7451 -0.0655 6.1365 21 7 4.4071 -0.2177 4.8469 22 6 3.7785 -0.5485 3.7197 23 8 4.4284 -0.6044 2.6972 24 1 -0.3634 0.5978 0.8360 25 1 -0.3633 0.4250 -0.9357 26 1 -0.3633 -1.0227 0.0998 27 1 1.8934 -0.5138 -0.8899 28 1 3.1280 1.4432 -0.0658 29 1 1.6239 1.9750 -0.8552 30 1 1.7314 1.9370 0.9211 31 1 3.5817 -1.9268 1.8490 32 1 3.3183 -1.9082 0.0888 33 1 4.3457 -3.7484 0.8150 34 1 1.5745 0.7687 4.8581 35 1 0.5891 -0.7139 4.9389 36 1 1.8365 -0.5141 7.0316 37 1 2.5399 -1.8538 6.0916 38 1 3.5959 0.9944 6.3420 39 1 4.3745 -0.4982 6.9143 40 1 5.3646 -0.0675 4.8069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601027739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:45 Heat of formation + Delta-G solvation = -77.949247 kcal Electronic energy + Delta-G solvation = -22359.994694 eV Core-core repulsion = 19174.484970 eV Total energy + Delta-G solvation = -3185.509724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63423 -38.66573 -36.42855 -35.27928 -33.57852 -32.61825 -31.19935 -29.45371 -26.63882 -26.29968 -24.89932 -22.84422 -22.54447 -21.60376 -19.25175 -18.13039 -17.26540 -16.92832 -16.35553 -15.66459 -15.38766 -14.84559 -14.24868 -13.94782 -13.74557 -13.64461 -13.59285 -13.17005 -12.91138 -12.56062 -12.41723 -11.92487 -11.69208 -11.52254 -11.34827 -11.22929 -11.08359 -10.79708 -10.74926 -10.69054 -10.59356 -10.25017 -10.11466 -9.32657 -9.05244 -8.89503 -8.82162 -8.34332 -7.45628 -6.38685 -4.13173 2.87565 3.18024 3.39397 3.41501 3.60000 3.63884 3.97111 4.49278 4.75575 4.83248 4.85041 4.98128 5.28329 5.33530 5.38229 5.55545 5.65924 5.70978 5.74360 5.83337 5.91668 5.96783 6.10673 6.17905 6.23340 6.39332 6.40986 6.46850 6.76383 6.82816 6.89259 6.94523 7.31911 7.49358 7.67893 8.05097 8.25019 8.46684 8.60108 8.78935 9.01517 9.58132 10.96953 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.009118 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.842342 B = 3070.173279 C = 4091.189260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 C -0.165 4.165 4 N -0.568 5.568 5 C 0.207 3.793 6 C -0.620 4.620 7 H 0.051 0.949 8 C 0.022 3.978 9 N -0.906 5.906 10 Si 1.066 2.934 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.288 1.288 14 C 0.539 3.461 15 O -0.569 6.569 16 C -0.126 4.126 17 H 0.142 0.858 18 C -0.104 4.104 19 C -0.139 4.139 20 C 0.112 3.888 21 N -0.723 5.723 22 C 0.530 3.470 23 O -0.525 6.525 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.018 0.982 33 H 0.271 0.729 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 8.216 9.243 12.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.296 5.296 5 C 0.087 3.913 6 C -0.658 4.658 7 H 0.069 0.931 8 C -0.184 4.184 9 N -0.542 5.542 10 Si 0.894 3.106 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.214 1.214 14 C 0.325 3.675 15 O -0.451 6.451 16 C -0.150 4.150 17 H 0.159 0.841 18 C -0.142 4.142 19 C -0.176 4.176 20 C -0.013 4.013 21 N -0.376 5.376 22 C 0.317 3.683 23 O -0.401 6.401 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.951 6.951 8.694 11.300 hybrid contribution 0.371 1.456 -0.049 1.503 sum -1.580 8.406 8.644 12.161 Atomic orbital electron populations 1.22159 0.95592 1.02524 1.01744 1.20856 0.94230 0.92387 0.88167 1.22170 1.00637 0.96802 1.02682 1.47960 1.50597 1.27151 1.03843 1.20107 0.91722 0.80384 0.99128 1.22434 0.95677 0.92366 1.55367 0.93052 1.25748 0.97995 1.00739 0.93869 1.70763 1.04230 1.34338 1.44858 0.83579 0.74748 0.75685 0.76548 1.20718 1.21427 1.21448 1.19504 0.80879 0.82912 0.84191 1.90523 1.38780 1.29170 1.86619 1.21420 0.92094 1.05618 0.95831 0.84087 1.21491 0.99268 1.02198 0.91231 1.21916 0.95116 1.01381 0.99232 1.21367 0.94639 1.00423 0.84832 1.45391 1.12051 1.71715 1.08447 1.19641 0.89595 0.76058 0.83041 1.90744 1.66403 1.50582 1.32418 0.90919 0.93096 0.92384 0.90207 0.93170 0.92642 0.90829 0.91122 0.96398 0.91798 0.90241 0.90338 0.89687 0.90612 0.91860 0.90783 0.76677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.06 37.16 0.34 -2.71 16 2 C 0.15 3.00 3.28 -67.93 -0.22 2.78 16 3 C -0.16 -3.01 9.15 37.16 0.34 -2.67 16 4 N -0.57 -12.96 2.28 -167.48 -0.38 -13.34 16 5 C 0.21 5.33 3.58 -5.19 -0.02 5.31 16 6 C -0.62 -16.94 8.65 -34.44 -0.30 -17.24 16 7 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 8 C 0.02 0.60 5.46 -17.82 -0.10 0.51 16 9 N -0.91 -26.93 13.65 55.43 0.76 -26.18 16 10 Si 1.07 24.67 29.90 -169.99 -5.08 19.58 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.54 11.69 6.05 -10.99 -0.07 11.62 16 15 O -0.57 -12.51 12.02 5.56 0.07 -12.44 16 16 C -0.13 -2.39 2.00 -93.14 -0.19 -2.57 16 17 H 0.14 2.95 7.00 -51.93 -0.36 2.58 16 18 C -0.10 -1.51 4.90 -26.52 -0.13 -1.64 16 19 C -0.14 -1.50 6.02 -26.60 -0.16 -1.66 16 20 C 0.11 1.12 7.17 -4.48 -0.03 1.09 16 21 N -0.72 -10.01 5.44 -61.41 -0.33 -10.34 16 22 C 0.53 9.95 7.03 -11.92 -0.08 9.87 16 23 O -0.52 -11.89 13.75 5.55 0.08 -11.81 16 24 H 0.07 1.43 6.32 -51.93 -0.33 1.10 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.63 7.71 -51.93 -0.40 1.23 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.45 6.10 -51.93 -0.32 1.13 16 31 H 0.07 1.90 3.85 -52.09 -0.20 1.70 16 32 H 0.02 0.50 7.66 -51.93 -0.40 0.10 16 33 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 34 H 0.08 1.20 7.56 -51.93 -0.39 0.80 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.40 4.92 8.80 -40.82 -0.36 4.56 16 LS Contribution 314.01 15.07 4.73 4.73 Total: -1.00 -32.54 314.01 -6.85 -39.39 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.06 Total: 7.73 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.62 Total: 2.68 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.04 Total: -49.87 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.14 Total: -24.25 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.54 -6.85 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.559 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds