Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47049 * 2 1 4 4 N 1.46498 * 109.47005 * 119.99794 * 2 1 3 5 5 C 1.46502 * 120.00138 * 118.20348 * 4 2 1 6 6 C 1.50696 * 109.47017 * 264.30757 * 5 4 2 7 7 H 1.08006 * 120.00156 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00325 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99443 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00359 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47077 * 180.02562 * 10 8 6 12 12 H 1.48501 * 109.46914 * 300.00095 * 10 8 6 13 13 H 1.48496 * 109.47422 * 60.00044 * 10 8 6 14 14 C 1.34780 * 120.00269 * 298.19925 * 4 2 1 15 15 O 1.21280 * 119.99871 * 4.64395 * 14 4 2 16 16 C 1.50694 * 120.00294 * 184.63684 * 14 4 2 17 17 H 1.09005 * 109.40003 * 311.41767 * 16 14 4 18 18 C 1.53069 * 109.40453 * 191.58696 * 16 14 4 19 19 C 1.53345 * 108.42603 * 190.97571 * 18 16 14 20 20 C 1.52915 * 108.67719 * 67.53123 * 19 18 16 21 21 N 1.45760 * 110.48433 * 309.24262 * 20 19 18 22 22 C 1.33229 * 124.07017 * 19.16274 * 21 20 19 23 23 O 1.21289 * 118.15797 * 177.70407 * 22 21 20 24 24 H 1.09007 * 109.47137 * 305.57046 * 1 2 3 25 25 H 1.09001 * 109.47046 * 65.57040 * 1 2 3 26 26 H 1.08994 * 109.47213 * 185.57414 * 1 2 3 27 27 H 1.08993 * 109.47412 * 240.00129 * 2 1 3 28 28 H 1.08999 * 109.47097 * 183.67181 * 3 2 1 29 29 H 1.09000 * 109.47307 * 303.67194 * 3 2 1 30 30 H 1.09003 * 109.46911 * 63.67156 * 3 2 1 31 31 H 1.08991 * 109.47115 * 144.30523 * 5 4 2 32 32 H 1.08999 * 109.46790 * 24.30542 * 5 4 2 33 33 H 0.96998 * 120.00345 * 359.97438 * 9 8 6 34 34 H 1.09005 * 109.67336 * 310.70619 * 18 16 14 35 35 H 1.08992 * 109.67679 * 71.20102 * 18 16 14 36 36 H 1.09004 * 109.60052 * 187.29067 * 19 18 16 37 37 H 1.09001 * 109.60056 * 307.60324 * 19 18 16 38 38 H 1.08997 * 109.30270 * 69.55629 * 20 19 18 39 39 H 1.09004 * 109.30146 * 189.14690 * 20 19 18 40 40 H 0.97003 * 117.94188 * 199.07299 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8278 -1.9043 1.0622 6 6 1.9399 -3.1160 1.1822 7 1 0.8787 -2.9942 1.3418 8 6 2.4821 -4.3801 1.0871 9 7 3.7742 -4.5283 0.8923 10 14 1.3815 -5.8821 1.2351 11 1 2.2020 -7.1123 1.0995 12 1 0.7131 -5.8771 2.5612 13 1 0.3544 -5.8508 0.1631 14 6 1.7229 -0.2093 2.4200 15 8 0.9840 0.7456 2.5339 16 6 2.3107 -0.8578 3.6467 17 1 2.1706 -1.9372 3.5881 18 6 1.6045 -0.3203 4.8939 19 6 2.3904 -0.7748 6.1297 20 6 3.7451 -0.0655 6.1365 21 7 4.4071 -0.2177 4.8469 22 6 3.7785 -0.5485 3.7197 23 8 4.4284 -0.6044 2.6972 24 1 -0.3634 0.5978 0.8360 25 1 -0.3633 0.4250 -0.9357 26 1 -0.3633 -1.0227 0.0998 27 1 1.8934 -0.5138 -0.8899 28 1 3.1280 1.4432 -0.0658 29 1 1.6239 1.9750 -0.8552 30 1 1.7314 1.9370 0.9211 31 1 3.5817 -1.9268 1.8490 32 1 3.3183 -1.9082 0.0888 33 1 4.3457 -3.7484 0.8150 34 1 1.5745 0.7687 4.8581 35 1 0.5891 -0.7139 4.9389 36 1 1.8365 -0.5141 7.0316 37 1 2.5399 -1.8538 6.0916 38 1 3.5959 0.9944 6.3420 39 1 4.3745 -0.4982 6.9143 40 1 5.3646 -0.0675 4.8069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601027739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = -100.640642 kcal Electronic energy + Delta-G solvation = -22360.978667 eV Core-core repulsion = 19174.484970 eV Total energy + Delta-G solvation = -3186.493696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.12989 -40.24175 -37.81970 -36.92228 -35.43985 -34.17070 -32.84137 -30.72447 -28.41205 -28.09329 -26.13753 -24.90036 -23.79916 -23.13972 -20.59593 -19.69710 -19.11083 -18.38195 -17.93397 -17.22576 -17.06426 -16.17800 -15.77360 -15.61560 -15.27075 -15.13061 -14.98797 -14.55197 -14.44059 -14.26692 -14.07510 -13.61328 -13.41776 -12.98872 -12.82796 -12.70714 -12.56316 -12.35634 -12.22776 -12.19357 -11.95885 -11.93584 -11.79861 -11.15818 -10.82474 -10.51372 -10.46222 -10.04930 -9.35114 -8.61738 -6.39729 1.36038 1.51806 1.59190 1.63078 1.79272 2.25052 2.41492 2.56059 3.14725 3.47342 3.58917 3.72562 3.87161 3.94455 4.16197 4.20253 4.27969 4.37384 4.53483 4.59670 4.68629 4.75204 4.83284 4.85860 4.88107 4.91411 5.01649 5.03848 5.17502 5.23824 5.32427 5.33166 5.79362 5.84705 5.89901 6.11980 6.20441 6.49055 6.67447 7.14772 7.25123 7.41905 8.70033 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.009118 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.842342 B = 3070.173279 C = 4091.189260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.132 3.868 3 C -0.151 4.151 4 N -0.578 5.578 5 C 0.222 3.778 6 C -0.619 4.619 7 H 0.045 0.955 8 C -0.025 4.025 9 N -0.928 5.928 10 Si 1.113 2.887 11 H -0.282 1.282 12 H -0.266 1.266 13 H -0.275 1.275 14 C 0.531 3.469 15 O -0.573 6.573 16 C -0.127 4.127 17 H 0.116 0.884 18 C -0.098 4.098 19 C -0.133 4.133 20 C 0.103 3.897 21 N -0.706 5.706 22 C 0.523 3.477 23 O -0.577 6.577 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.063 0.937 32 H -0.012 1.012 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 8.710 11.206 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.029 3.971 3 C -0.209 4.209 4 N -0.306 5.306 5 C 0.101 3.899 6 C -0.658 4.658 7 H 0.063 0.937 8 C -0.224 4.224 9 N -0.565 5.565 10 Si 0.934 3.066 11 H -0.208 1.208 12 H -0.191 1.191 13 H -0.200 1.200 14 C 0.318 3.682 15 O -0.456 6.456 16 C -0.151 4.151 17 H 0.134 0.866 18 C -0.136 4.136 19 C -0.170 4.170 20 C -0.019 4.019 21 N -0.358 5.358 22 C 0.310 3.690 23 O -0.458 6.458 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.007 0.993 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.129 0.871 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.072 7.495 10.721 13.437 hybrid contribution 0.722 1.399 -0.630 1.696 sum -2.350 8.895 10.091 13.655 Atomic orbital electron populations 1.22038 0.94106 1.01368 1.03192 1.21144 0.95464 0.93364 0.87173 1.22043 1.00010 0.95390 1.03439 1.47999 1.50662 1.26659 1.05298 1.19727 0.91666 0.81454 0.97078 1.22602 0.95393 0.93185 1.54616 0.93665 1.27218 0.98336 1.04051 0.92810 1.70898 1.05128 1.33461 1.46999 0.82989 0.73441 0.72153 0.77995 1.20780 1.19058 1.20019 1.19997 0.80660 0.82923 0.84618 1.90501 1.38920 1.29313 1.86820 1.21424 0.93079 1.03935 0.96654 0.86636 1.21527 0.99497 1.01770 0.90845 1.21962 0.95384 1.01012 0.98666 1.21791 0.94644 1.02206 0.83297 1.45374 1.12600 1.69206 1.08590 1.19686 0.89413 0.76183 0.83755 1.90710 1.67176 1.53283 1.34618 0.91777 0.89680 0.94281 0.91020 0.94199 0.89206 0.92177 0.91943 0.99346 0.93530 0.90496 0.90282 0.85760 0.91255 0.89555 0.87072 0.75673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 9.06 71.98 0.65 -4.89 16 2 C 0.13 5.45 3.28 44.99 0.15 5.60 16 3 C -0.15 -5.47 9.15 71.98 0.66 -4.81 16 4 N -0.58 -27.35 2.28 -802.17 -1.83 -29.18 16 5 C 0.22 12.04 3.58 85.63 0.31 12.35 16 6 C -0.62 -34.87 8.65 25.60 0.22 -34.65 16 7 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 8 C -0.03 -1.42 5.46 84.66 0.46 -0.96 16 9 N -0.93 -56.75 13.65 21.45 0.29 -56.46 16 10 Si 1.11 49.48 29.90 68.60 2.05 51.53 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 14 C 0.53 23.52 6.05 87.65 0.53 24.05 16 15 O -0.57 -25.29 12.02 -3.03 -0.04 -25.33 16 16 C -0.13 -4.89 2.00 -12.43 -0.02 -4.91 16 17 H 0.12 5.02 7.00 -2.38 -0.02 5.00 16 18 C -0.10 -2.73 4.90 30.73 0.15 -2.58 16 19 C -0.13 -2.43 6.02 30.68 0.18 -2.25 16 20 C 0.10 1.68 7.17 86.49 0.62 2.30 16 21 N -0.71 -18.53 5.44 -467.46 -2.54 -21.07 16 22 C 0.52 19.91 7.03 87.73 0.62 20.52 16 23 O -0.58 -27.30 13.75 -3.06 -0.04 -27.34 16 24 H 0.06 2.48 6.32 -2.38 -0.02 2.47 16 25 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.07 3.03 7.71 -2.39 -0.02 3.01 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.06 2.34 6.10 -2.39 -0.01 2.33 16 31 H 0.06 3.57 3.85 -4.86 -0.02 3.55 16 32 H -0.01 -0.68 7.66 -2.39 -0.02 -0.70 16 33 H 0.26 16.15 7.22 -92.71 -0.67 15.48 16 34 H 0.08 2.18 7.56 -2.38 -0.02 2.16 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.41 9.50 8.80 -92.71 -0.82 8.68 16 Total: -1.00 -73.87 314.01 2.73 -71.13 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.32 Total: 26.93 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 4.53 Total: 9.78 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -4.08 Total: -106.71 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.08 Total: -52.66 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -73.87 2.73 -71.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.506 kcal (2) G-P(sol) polarization free energy of solvation -73.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds