Wall clock time and date at job start Mon Mar 30 2020 01:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47375 * 300.89416 * 3 2 1 5 5 N 1.46501 * 109.46807 * 60.88845 * 3 2 1 6 6 C 1.34784 * 119.99953 * 274.99937 * 5 3 2 7 7 C 1.50703 * 119.99884 * 180.27328 * 6 5 3 8 8 O 1.21274 * 119.99754 * 0.02562 * 6 5 3 9 9 C 1.50701 * 109.47499 * 180.88552 * 3 2 1 10 10 O 1.21282 * 120.00268 * 263.91057 * 9 3 2 11 11 N 1.34777 * 119.99666 * 83.90748 * 9 3 2 12 12 C 1.46499 * 119.99596 * 184.94604 * 11 9 3 13 13 C 1.52999 * 109.46833 * 175.63081 * 12 11 9 14 14 C 1.50696 * 115.55302 * 64.03769 * 13 12 11 15 15 H 1.07998 * 120.00321 * 268.72492 * 14 13 12 16 16 C 1.37887 * 119.99935 * 88.72915 * 14 13 12 17 17 N 1.31513 * 119.99956 * 178.99367 * 16 14 13 18 18 Si 1.86807 * 119.99762 * 358.99426 * 16 14 13 19 19 H 1.48497 * 109.46886 * 89.97705 * 18 16 14 20 20 H 1.48501 * 109.46739 * 209.97969 * 18 16 14 21 21 H 1.48500 * 109.46850 * 329.97927 * 18 16 14 22 22 C 1.53009 * 117.49840 * 278.36985 * 13 12 11 23 23 C 1.52997 * 117.49953 * 209.71180 * 13 12 11 24 24 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46767 * 300.00012 * 1 2 3 26 26 H 1.08996 * 109.47152 * 59.99325 * 1 2 3 27 27 H 1.08999 * 109.47156 * 240.00273 * 2 1 3 28 28 H 1.09006 * 109.47480 * 120.00289 * 2 1 3 29 29 H 0.97003 * 120.00406 * 95.00053 * 5 3 2 30 30 H 1.08993 * 109.47207 * 269.72996 * 7 6 5 31 31 H 1.08998 * 109.46950 * 29.72807 * 7 6 5 32 32 H 1.09003 * 109.46553 * 149.72314 * 7 6 5 33 33 H 0.97002 * 120.00202 * 4.94077 * 11 9 3 34 34 H 1.08997 * 109.47003 * 295.62678 * 12 11 9 35 35 H 1.08994 * 109.47691 * 55.63219 * 12 11 9 36 36 H 0.97000 * 119.99827 * 179.97438 * 17 16 14 37 37 H 1.08998 * 117.49376 * 359.97438 * 22 13 12 38 38 H 1.08997 * 117.49766 * 145.02137 * 22 13 12 39 39 H 1.08999 * 117.50127 * 214.97733 * 23 13 12 40 40 H 1.09003 * 117.50163 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6637 1.9610 -0.8819 5 7 1.5693 2.1268 1.2068 6 6 0.3474 2.6954 1.2258 7 6 -0.1344 3.4048 2.4651 8 8 -0.3624 2.6401 0.2440 9 6 3.5469 1.4425 -0.0220 10 8 4.1685 1.5486 1.0140 11 7 4.2037 1.3247 -1.1929 12 6 5.6646 1.2157 -1.2055 13 6 6.1464 0.9848 -2.6392 14 6 5.8766 2.1100 -3.6047 15 1 4.9637 2.1193 -4.1816 16 6 6.7953 3.1276 -3.7516 17 7 6.5690 4.0991 -4.6087 18 14 8.3614 3.1262 -2.7333 19 1 9.4265 2.3937 -3.4644 20 1 8.7975 4.5254 -2.4942 21 1 8.1051 2.4583 -1.4320 22 6 6.0845 -0.4437 -3.1840 23 6 7.4355 0.1834 -2.8309 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.1369 2.1708 1.9921 30 1 -0.6585 2.6976 3.1079 31 1 0.7191 3.8196 3.0013 32 1 -0.8122 4.2102 2.1823 33 1 3.7092 1.3119 -2.0273 34 1 6.1010 2.1368 -0.8194 35 1 5.9719 0.3779 -0.5797 36 1 7.2152 4.8152 -4.7117 37 1 5.7009 -1.2189 -2.5207 38 1 5.8489 -0.5695 -4.2407 39 1 8.0883 0.4697 -3.6555 40 1 7.9406 -0.1791 -1.9355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601544921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:10 Heat of formation + Delta-G solvation = -59.853907 kcal Electronic energy + Delta-G solvation = -20971.072189 eV Core-core repulsion = 17786.347138 eV Total energy + Delta-G solvation = -3184.725051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35336 -38.94486 -37.17288 -35.23081 -33.68158 -32.54089 -32.17346 -29.82652 -27.90303 -26.12151 -24.91424 -22.05218 -21.77601 -20.51979 -20.06209 -19.30921 -17.56975 -16.90410 -16.24142 -15.82761 -15.81437 -15.12382 -14.91177 -14.50942 -14.06754 -13.94254 -13.50932 -13.22231 -12.85876 -12.68985 -12.59834 -12.49610 -12.22731 -12.10791 -11.79989 -11.51508 -11.21839 -10.93536 -10.87258 -10.55304 -10.23735 -9.90609 -9.80200 -9.59081 -9.24745 -9.07226 -8.72364 -8.62968 -8.43076 -6.20320 -4.25794 2.56101 2.80617 3.06959 3.24302 3.34967 3.38863 3.69838 4.35015 4.68505 4.77680 4.93260 4.98391 5.04587 5.08447 5.13534 5.23889 5.38293 5.51740 5.61091 5.69136 5.78148 5.91988 5.95697 5.99917 6.04567 6.14506 6.32167 6.36601 6.37767 6.44099 6.64629 6.89475 6.97181 7.02782 7.48426 7.62140 7.96382 8.19082 8.35553 8.53031 8.79680 9.42277 10.90865 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.004872 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.448857 B = 5745.727413 C = 6085.704345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.126 3.874 4 H 0.110 0.890 5 N -0.712 5.712 6 C 0.511 3.489 7 C -0.172 4.172 8 O -0.543 6.543 9 C 0.505 3.495 10 O -0.556 6.556 11 N -0.693 5.693 12 C 0.156 3.844 13 C -0.017 4.017 14 C -0.493 4.493 15 H 0.079 0.921 16 C 0.081 3.919 17 N -0.893 5.893 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.259 1.259 22 C -0.177 4.177 23 C -0.193 4.193 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.409 0.591 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.408 0.592 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 -6.269 11.731 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C 0.018 3.982 4 H 0.128 0.872 5 N -0.366 5.366 6 C 0.298 3.702 7 C -0.231 4.231 8 O -0.420 6.420 9 C 0.289 3.711 10 O -0.435 6.435 11 N -0.342 5.342 12 C 0.032 3.968 13 C -0.018 4.018 14 C -0.531 4.531 15 H 0.097 0.903 16 C -0.123 4.123 17 N -0.529 5.529 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.183 1.183 22 C -0.215 4.215 23 C -0.231 4.231 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.246 0.754 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.243 0.757 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.253 -6.055 11.660 16.070 hybrid contribution 1.141 0.164 0.397 1.219 sum -8.113 -5.892 12.058 15.682 Atomic orbital electron populations 1.21788 0.94196 1.00755 1.03068 1.21833 0.97397 0.94072 1.03149 1.20875 0.91422 0.95197 0.90743 0.87249 1.45877 1.17823 1.56512 1.16400 1.20739 0.81020 0.78200 0.90195 1.21871 1.03227 1.01885 0.96144 1.90733 1.55335 1.59781 1.36193 1.20451 0.89266 0.76995 0.84382 1.90643 1.69158 1.51000 1.32732 1.45851 1.08783 1.71427 1.08132 1.21187 0.78344 1.00296 0.96960 1.19616 0.97407 0.91984 0.92808 1.20183 1.06972 1.04071 1.21832 0.90297 1.24984 0.98100 0.94820 0.94389 1.69884 1.36384 1.11823 1.34855 0.86843 0.83662 0.76755 0.81903 1.20345 1.22088 1.18288 1.22858 1.00763 0.96828 1.01007 1.22952 0.91515 1.06454 1.02155 0.93260 0.92858 0.91579 0.90289 0.91359 0.75386 0.88975 0.90097 0.88822 0.75659 0.91721 0.93471 0.92413 0.90886 0.89314 0.89088 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.45 37.16 0.31 -1.33 16 2 C -0.13 -1.50 5.62 -26.73 -0.15 -1.65 16 3 C 0.13 1.74 2.70 -69.08 -0.19 1.56 16 4 H 0.11 1.59 7.58 -51.93 -0.39 1.20 16 5 N -0.71 -8.83 4.95 -54.93 -0.27 -9.10 16 6 C 0.51 6.24 6.33 -10.98 -0.07 6.17 16 7 C -0.17 -1.35 10.30 36.01 0.37 -0.98 16 8 O -0.54 -8.45 14.22 5.56 0.08 -8.37 16 9 C 0.50 8.46 7.05 -10.98 -0.08 8.38 16 10 O -0.56 -10.69 15.99 5.56 0.09 -10.60 16 11 N -0.69 -12.30 5.47 -60.30 -0.33 -12.63 16 12 C 0.16 3.14 5.19 -4.04 -0.02 3.12 16 13 C -0.02 -0.36 0.86 -155.66 -0.13 -0.50 16 14 C -0.49 -12.69 9.15 -34.44 -0.32 -13.01 16 15 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 18 Si 0.88 21.08 24.74 -169.99 -4.21 16.88 16 19 H -0.28 -6.49 7.10 56.52 0.40 -6.09 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -5.93 5.90 56.52 0.33 -5.60 16 22 C -0.18 -3.29 9.96 -26.69 -0.27 -3.55 16 23 C -0.19 -3.85 7.52 -26.69 -0.20 -4.05 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.65 5.75 -51.93 -0.30 0.35 16 26 H 0.07 0.86 7.59 -51.93 -0.39 0.46 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.41 4.72 7.77 -40.82 -0.32 4.40 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.41 6.87 8.30 -40.82 -0.34 6.53 16 34 H 0.06 1.46 6.89 -51.93 -0.36 1.10 16 35 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.09 1.92 7.06 -51.93 -0.37 1.55 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -31.11 326.72 -6.09 -37.20 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.32 Total: 10.82 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -0.83 Total: -3.74 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.17 Total: -47.11 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.17 Total: -18.97 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.21 Total: 16.88 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.11 -6.09 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601544921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.653 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds