Wall clock time and date at job start Mon Mar 30 2020 01:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47375 * 300.89416 * 3 2 1 5 5 N 1.46501 * 109.46807 * 60.88845 * 3 2 1 6 6 C 1.34784 * 119.99953 * 274.99937 * 5 3 2 7 7 C 1.50703 * 119.99884 * 180.27328 * 6 5 3 8 8 O 1.21274 * 119.99754 * 0.02562 * 6 5 3 9 9 C 1.50701 * 109.47499 * 180.88552 * 3 2 1 10 10 O 1.21282 * 120.00268 * 263.91057 * 9 3 2 11 11 N 1.34777 * 119.99666 * 83.90748 * 9 3 2 12 12 C 1.46499 * 119.99596 * 184.94604 * 11 9 3 13 13 C 1.52999 * 109.46833 * 175.63081 * 12 11 9 14 14 C 1.50696 * 115.55302 * 64.03769 * 13 12 11 15 15 H 1.07998 * 120.00321 * 268.72492 * 14 13 12 16 16 C 1.37887 * 119.99935 * 88.72915 * 14 13 12 17 17 N 1.31513 * 119.99956 * 178.99367 * 16 14 13 18 18 Si 1.86807 * 119.99762 * 358.99426 * 16 14 13 19 19 H 1.48497 * 109.46886 * 89.97705 * 18 16 14 20 20 H 1.48501 * 109.46739 * 209.97969 * 18 16 14 21 21 H 1.48500 * 109.46850 * 329.97927 * 18 16 14 22 22 C 1.53009 * 117.49840 * 278.36985 * 13 12 11 23 23 C 1.52997 * 117.49953 * 209.71180 * 13 12 11 24 24 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46767 * 300.00012 * 1 2 3 26 26 H 1.08996 * 109.47152 * 59.99325 * 1 2 3 27 27 H 1.08999 * 109.47156 * 240.00273 * 2 1 3 28 28 H 1.09006 * 109.47480 * 120.00289 * 2 1 3 29 29 H 0.97003 * 120.00406 * 95.00053 * 5 3 2 30 30 H 1.08993 * 109.47207 * 269.72996 * 7 6 5 31 31 H 1.08998 * 109.46950 * 29.72807 * 7 6 5 32 32 H 1.09003 * 109.46553 * 149.72314 * 7 6 5 33 33 H 0.97002 * 120.00202 * 4.94077 * 11 9 3 34 34 H 1.08997 * 109.47003 * 295.62678 * 12 11 9 35 35 H 1.08994 * 109.47691 * 55.63219 * 12 11 9 36 36 H 0.97000 * 119.99827 * 179.97438 * 17 16 14 37 37 H 1.08998 * 117.49376 * 359.97438 * 22 13 12 38 38 H 1.08997 * 117.49766 * 145.02137 * 22 13 12 39 39 H 1.08999 * 117.50127 * 214.97733 * 23 13 12 40 40 H 1.09003 * 117.50163 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6637 1.9610 -0.8819 5 7 1.5693 2.1268 1.2068 6 6 0.3474 2.6954 1.2258 7 6 -0.1344 3.4048 2.4651 8 8 -0.3624 2.6401 0.2440 9 6 3.5469 1.4425 -0.0220 10 8 4.1685 1.5486 1.0140 11 7 4.2037 1.3247 -1.1929 12 6 5.6646 1.2157 -1.2055 13 6 6.1464 0.9848 -2.6392 14 6 5.8766 2.1100 -3.6047 15 1 4.9637 2.1193 -4.1816 16 6 6.7953 3.1276 -3.7516 17 7 6.5690 4.0991 -4.6087 18 14 8.3614 3.1262 -2.7333 19 1 9.4265 2.3937 -3.4644 20 1 8.7975 4.5254 -2.4942 21 1 8.1051 2.4583 -1.4320 22 6 6.0845 -0.4437 -3.1840 23 6 7.4355 0.1834 -2.8309 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.1369 2.1708 1.9921 30 1 -0.6585 2.6976 3.1079 31 1 0.7191 3.8196 3.0013 32 1 -0.8122 4.2102 2.1823 33 1 3.7092 1.3119 -2.0273 34 1 6.1010 2.1368 -0.8194 35 1 5.9719 0.3779 -0.5797 36 1 7.2152 4.8152 -4.7117 37 1 5.7009 -1.2189 -2.5207 38 1 5.8489 -0.5695 -4.2407 39 1 8.0883 0.4697 -3.6555 40 1 7.9406 -0.1791 -1.9355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601544921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:09 Heat of formation + Delta-G solvation = -83.096755 kcal Electronic energy + Delta-G solvation = -20972.080074 eV Core-core repulsion = 17786.347138 eV Total energy + Delta-G solvation = -3185.732936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52687 -40.19972 -38.76420 -36.34804 -35.14262 -34.22450 -33.53178 -30.64529 -29.18784 -27.83563 -26.46955 -23.39183 -23.01809 -21.60288 -21.38190 -20.97408 -18.91354 -18.29553 -17.70956 -17.08227 -16.97766 -16.75249 -16.26701 -15.92619 -15.43113 -14.98687 -14.81745 -14.66680 -14.42757 -14.19997 -13.90771 -13.49594 -13.32042 -13.10574 -13.05083 -12.85064 -12.67204 -12.47206 -12.18286 -11.97719 -11.90520 -11.59445 -11.06588 -10.97425 -10.91321 -10.68594 -10.39181 -10.09726 -9.95994 -8.30660 -6.37796 1.33467 1.39105 1.44050 1.49196 1.66480 1.92291 2.35532 2.49910 3.04737 3.21044 3.63153 3.87668 3.95700 4.00633 4.03651 4.35858 4.37600 4.40914 4.48413 4.51665 4.56192 4.67743 4.80403 4.83249 4.87207 4.99883 5.05282 5.09985 5.12192 5.28462 5.35388 5.41847 5.46664 5.51063 5.69013 6.27072 6.53592 6.56160 6.72135 7.13719 7.23612 7.33292 8.84025 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.004872 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.448857 B = 5745.727413 C = 6085.704345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.132 3.868 4 H 0.098 0.902 5 N -0.710 5.710 6 C 0.506 3.494 7 C -0.164 4.164 8 O -0.581 6.581 9 C 0.509 3.491 10 O -0.578 6.578 11 N -0.696 5.696 12 C 0.165 3.835 13 C -0.042 4.042 14 C -0.481 4.481 15 H 0.044 0.956 16 C 0.025 3.975 17 N -0.945 5.945 18 Si 0.932 3.068 19 H -0.266 1.266 20 H -0.304 1.304 21 H -0.240 1.240 22 C -0.151 4.151 23 C -0.192 4.192 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.415 0.585 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.411 0.589 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.264 0.736 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.250 -8.152 13.830 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.023 3.977 4 H 0.116 0.884 5 N -0.365 5.365 6 C 0.296 3.704 7 C -0.223 4.223 8 O -0.461 6.461 9 C 0.294 3.706 10 O -0.459 6.459 11 N -0.344 5.344 12 C 0.041 3.959 13 C -0.043 4.043 14 C -0.518 4.518 15 H 0.062 0.938 16 C -0.174 4.174 17 N -0.585 5.585 18 Si 0.758 3.242 19 H -0.191 1.191 20 H -0.232 1.232 21 H -0.163 1.163 22 C -0.188 4.188 23 C -0.230 4.230 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.253 0.747 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.247 0.753 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.221 -7.967 13.783 18.398 hybrid contribution 1.042 0.730 -0.288 1.305 sum -8.179 -7.238 13.495 17.361 Atomic orbital electron populations 1.21704 0.93867 1.01559 1.01956 1.21813 0.97478 0.92608 1.03896 1.20791 0.89105 0.96662 0.91169 0.88397 1.45937 1.18130 1.56424 1.15984 1.21547 0.80330 0.77523 0.91042 1.21903 1.04092 1.02011 0.94309 1.90721 1.56256 1.61193 1.37968 1.20871 0.90332 0.75805 0.83547 1.90628 1.69962 1.51901 1.33380 1.45849 1.08079 1.71762 1.08758 1.20925 0.79473 0.99587 0.95927 1.19458 0.99971 0.92178 0.92674 1.20373 1.05095 1.05060 1.21316 0.93768 1.25752 1.01349 0.94717 0.95534 1.70025 1.37817 1.13140 1.37485 0.85997 0.80416 0.76364 0.81421 1.19139 1.23212 1.16301 1.22887 0.99265 0.95284 1.01352 1.23021 0.91427 1.05745 1.02818 0.91409 0.93406 0.93272 0.89439 0.90651 0.74718 0.86703 0.88266 0.88538 0.75313 0.94461 0.91655 0.92694 0.87626 0.89768 0.90472 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.45 71.98 0.61 -2.32 16 2 C -0.12 -2.63 5.62 30.59 0.17 -2.45 16 3 C 0.13 3.51 2.70 44.25 0.12 3.63 16 4 H 0.10 2.87 7.58 -2.39 -0.02 2.85 16 5 N -0.71 -16.73 4.95 -446.08 -2.21 -18.94 16 6 C 0.51 11.76 6.33 87.66 0.55 12.32 16 7 C -0.16 -2.20 10.30 71.24 0.73 -1.47 16 8 O -0.58 -17.93 14.22 -3.01 -0.04 -17.97 16 9 C 0.51 16.44 7.05 87.66 0.62 17.06 16 10 O -0.58 -21.35 15.99 -3.04 -0.05 -21.40 16 11 N -0.70 -23.97 5.47 -463.07 -2.53 -26.50 16 12 C 0.16 6.36 5.19 86.38 0.45 6.81 16 13 C -0.04 -1.71 0.86 -52.93 -0.05 -1.76 16 14 C -0.48 -25.04 9.15 25.60 0.23 -24.81 16 15 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 16 C 0.02 1.36 5.47 84.66 0.46 1.83 16 17 N -0.95 -57.25 13.96 21.45 0.30 -56.95 16 18 Si 0.93 43.37 24.74 68.60 1.70 45.07 16 19 H -0.27 -11.80 7.10 99.48 0.71 -11.09 16 20 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 21 H -0.24 -10.33 5.90 99.48 0.59 -9.74 16 22 C -0.15 -5.14 9.96 30.62 0.30 -4.83 16 23 C -0.19 -7.11 7.52 30.62 0.23 -6.88 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.09 5.75 -2.39 -0.01 1.08 16 26 H 0.05 1.24 7.59 -2.39 -0.02 1.23 16 27 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.42 8.89 7.77 -92.71 -0.72 8.17 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.41 13.68 8.30 -92.71 -0.77 12.91 16 34 H 0.04 1.63 6.89 -2.39 -0.02 1.62 16 35 H 0.07 2.30 8.10 -2.39 -0.02 2.28 16 36 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.08 3.08 7.06 -2.39 -0.02 3.06 16 40 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -68.27 326.72 1.04 -67.23 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -0.56 Total: 32.34 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 4.44 Total: -2.87 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -4.44 Total: -102.39 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.09 Total: -39.37 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.70 Total: 45.07 kcal Total: -68.27 1.04 -67.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601544921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.871 kcal (2) G-P(sol) polarization free energy of solvation -68.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds