Wall clock time and date at job start Mon Mar 30 2020 00:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00482 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.40164 * 300.17801 * 16 14 13 18 18 C 1.53073 * 109.40659 * 180.42936 * 16 14 13 19 19 C 1.53319 * 108.44003 * 190.98012 * 18 16 14 20 20 C 1.52923 * 108.68588 * 67.50804 * 19 18 16 21 21 N 1.45754 * 110.48981 * 309.26081 * 20 19 18 22 22 C 1.33358 * 124.10571 * 19.09129 * 21 20 19 23 23 O 1.21277 * 118.24376 * 177.76455 * 22 21 20 24 24 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 26 26 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 29 29 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 33 33 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 34 34 H 1.08999 * 109.67323 * 310.71134 * 18 16 14 35 35 H 1.08998 * 109.66784 * 71.23849 * 18 16 14 36 36 H 1.09004 * 109.59335 * 307.75857 * 19 18 16 37 37 H 1.08997 * 109.61139 * 187.26984 * 19 18 16 38 38 H 1.08997 * 109.30545 * 188.93997 * 20 19 18 39 39 H 1.09008 * 109.13269 * 69.46195 * 20 19 18 40 40 H 0.97004 * 117.94652 * 199.07455 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.6422 -0.5355 4.4055 10 1 1.3588 -0.9387 5.1155 11 1 2.4973 -2.5587 3.7155 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5749 -1.4770 -3.7807 16 6 1.3750 0.2192 -4.8999 17 1 0.2851 0.2205 -4.8973 18 6 1.8779 -0.5094 -6.1487 19 6 1.5941 0.3712 -7.3712 20 6 2.4738 1.6194 -7.2908 21 7 2.3442 2.2516 -5.9839 22 6 1.8756 1.6351 -4.8982 23 8 1.8520 2.2510 -3.8537 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7164 1.1668 3.4844 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 0.9938 0.7578 -2.3564 34 1 2.9503 -0.6850 -6.0641 35 1 1.3569 -1.4611 -6.2529 36 1 0.5440 0.6636 -7.3752 37 1 1.8258 -0.1813 -8.2818 38 1 2.1699 2.3249 -8.0641 39 1 3.5137 1.3346 -7.4517 40 1 2.6161 3.1788 -5.8985 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601627440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:42 Heat of formation + Delta-G solvation = -88.387661 kcal Electronic energy + Delta-G solvation = -21373.749311 eV Core-core repulsion = 18187.786943 eV Total energy + Delta-G solvation = -3185.962367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82801 -38.67185 -36.75083 -36.15070 -33.24199 -33.02820 -30.84134 -29.92797 -26.00359 -25.57904 -25.20662 -24.06751 -22.89799 -20.60083 -19.19619 -18.62431 -17.58223 -17.02160 -16.47548 -15.72894 -15.26446 -14.99493 -14.56570 -14.51379 -14.28332 -13.80852 -13.58521 -13.33873 -12.82872 -12.51735 -12.10879 -12.05217 -11.58942 -11.54636 -11.25662 -11.20409 -11.07563 -10.78003 -10.62094 -10.26416 -10.12121 -9.87287 -9.52098 -9.50341 -9.26390 -9.15466 -8.67270 -8.35178 -8.19121 -5.93275 -4.03417 2.43801 2.86040 3.29278 3.33470 3.40007 3.43798 3.76803 4.37233 4.44255 4.46279 4.55499 4.59848 5.05130 5.10954 5.19818 5.32912 5.36458 5.48130 5.60473 5.77820 6.04924 6.34226 6.42569 6.58969 6.64321 6.87296 7.00926 7.06866 7.09874 7.15860 7.20072 7.48883 7.68772 7.78202 8.05372 8.12744 8.19241 8.26489 8.48254 8.76482 8.97232 9.61644 11.07964 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040517 B = 0.004376 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.899648 B = 6396.326396 C = 6719.402532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.131 3.869 13 N -0.696 5.696 14 C 0.518 3.482 15 O -0.552 6.552 16 C -0.128 4.128 17 H 0.126 0.874 18 C -0.104 4.104 19 C -0.138 4.138 20 C 0.108 3.892 21 N -0.719 5.719 22 C 0.526 3.474 23 O -0.532 6.532 24 H 0.085 0.915 25 H 0.006 0.994 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.015 0.985 29 H 0.083 0.917 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.407 0.593 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 2.460 -20.291 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.347 5.347 14 C 0.301 3.699 15 O -0.431 6.431 16 C -0.152 4.152 17 H 0.144 0.856 18 C -0.142 4.142 19 C -0.176 4.176 20 C -0.016 4.016 21 N -0.373 5.373 22 C 0.312 3.688 23 O -0.408 6.408 24 H 0.104 0.896 25 H 0.025 0.975 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.510 1.961 -19.641 19.745 hybrid contribution 0.170 0.313 0.783 0.861 sum -0.340 2.274 -18.857 18.997 Atomic orbital electron populations 1.21818 0.97829 0.98985 1.00124 1.18351 0.92774 0.92966 0.90387 1.21806 0.98397 0.98198 1.00457 1.20999 1.31430 1.11951 0.89964 0.92522 1.24884 0.94938 0.94938 0.98787 1.69827 1.36741 1.22722 1.23074 0.86581 0.78548 0.80098 0.82674 1.20773 1.21314 1.19945 1.21739 0.98155 0.95629 0.83647 1.46349 1.51590 1.31271 1.05442 1.19702 0.81192 0.84658 0.84390 1.90668 1.38814 1.26943 1.86723 1.21492 1.03833 0.92919 0.97002 0.85594 1.21490 1.03497 0.98512 0.90710 1.21929 1.00420 0.95778 0.99454 1.21422 1.00429 0.95518 0.84218 1.45367 1.66019 1.16251 1.09618 1.19673 0.77396 0.88323 0.83451 1.90833 1.54801 1.65504 1.29663 0.89641 0.97463 0.95533 0.95756 0.96609 0.89837 0.93094 0.92854 0.92710 0.75534 0.89907 0.89837 0.90819 0.89338 0.90449 0.91510 0.76278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.08 37.16 0.30 -2.81 16 2 C 0.06 1.39 0.50 -155.66 -0.08 1.31 16 3 C -0.13 -3.27 8.07 37.16 0.30 -2.97 16 4 C -0.50 -13.81 8.01 -34.44 -0.28 -14.09 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.54 9.35 55.43 0.52 -24.02 16 8 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.13 3.00 4.50 -4.05 -0.02 2.98 16 13 N -0.70 -13.91 4.44 -60.30 -0.27 -14.18 16 14 C 0.52 9.48 7.06 -10.99 -0.08 9.40 16 15 O -0.55 -11.61 15.79 5.55 0.09 -11.52 16 16 C -0.13 -1.68 2.78 -93.14 -0.26 -1.94 16 17 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 18 C -0.10 -1.06 4.78 -26.53 -0.13 -1.19 16 19 C -0.14 -0.88 6.02 -26.61 -0.16 -1.04 16 20 C 0.11 0.68 7.17 -4.48 -0.03 0.65 16 21 N -0.72 -6.99 5.45 -61.38 -0.33 -7.33 16 22 C 0.53 7.24 7.28 -11.87 -0.09 7.16 16 23 O -0.53 -9.52 15.56 5.56 0.09 -9.44 16 24 H 0.08 2.24 6.08 -51.93 -0.32 1.92 16 25 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.01 0.36 6.86 -51.93 -0.36 0.00 16 29 H 0.08 2.25 6.06 -51.93 -0.31 1.94 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.41 8.02 4.83 -40.82 -0.20 7.83 16 34 H 0.08 0.98 7.72 -51.93 -0.40 0.58 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 40 H 0.40 3.48 8.80 -40.82 -0.36 3.12 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -32.11 315.53 -6.85 -38.96 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.07 Total: 7.29 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.61 Total: -0.85 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.08 Total: -45.53 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.17 Total: -20.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.11 -6.85 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601627440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.428 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds