Wall clock time and date at job start Mon Mar 30 2020 00:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00482 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.40164 * 300.17801 * 16 14 13 18 18 C 1.53073 * 109.40659 * 180.42936 * 16 14 13 19 19 C 1.53319 * 108.44003 * 190.98012 * 18 16 14 20 20 C 1.52923 * 108.68588 * 67.50804 * 19 18 16 21 21 N 1.45754 * 110.48981 * 309.26081 * 20 19 18 22 22 C 1.33358 * 124.10571 * 19.09129 * 21 20 19 23 23 O 1.21277 * 118.24376 * 177.76455 * 22 21 20 24 24 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 26 26 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 29 29 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 33 33 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 34 34 H 1.08999 * 109.67323 * 310.71134 * 18 16 14 35 35 H 1.08998 * 109.66784 * 71.23849 * 18 16 14 36 36 H 1.09004 * 109.59335 * 307.75857 * 19 18 16 37 37 H 1.08997 * 109.61139 * 187.26984 * 19 18 16 38 38 H 1.08997 * 109.30545 * 188.93997 * 20 19 18 39 39 H 1.09008 * 109.13269 * 69.46195 * 20 19 18 40 40 H 0.97004 * 117.94652 * 199.07455 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.6422 -0.5355 4.4055 10 1 1.3588 -0.9387 5.1155 11 1 2.4973 -2.5587 3.7155 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5749 -1.4770 -3.7807 16 6 1.3750 0.2192 -4.8999 17 1 0.2851 0.2205 -4.8973 18 6 1.8779 -0.5094 -6.1487 19 6 1.5941 0.3712 -7.3712 20 6 2.4738 1.6194 -7.2908 21 7 2.3442 2.2516 -5.9839 22 6 1.8756 1.6351 -4.8982 23 8 1.8520 2.2510 -3.8537 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7164 1.1668 3.4844 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 0.9938 0.7578 -2.3564 34 1 2.9503 -0.6850 -6.0641 35 1 1.3569 -1.4611 -6.2529 36 1 0.5440 0.6636 -7.3752 37 1 1.8258 -0.1813 -8.2818 38 1 2.1699 2.3249 -8.0641 39 1 3.5137 1.3346 -7.4517 40 1 2.6161 3.1788 -5.8985 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601627440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:41 Heat of formation + Delta-G solvation = -111.433832 kcal Electronic energy + Delta-G solvation = -21374.748668 eV Core-core repulsion = 18187.786943 eV Total energy + Delta-G solvation = -3186.961724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94100 -40.08885 -38.22886 -37.43573 -34.96867 -34.07428 -32.69022 -30.87660 -27.60463 -27.59413 -27.06160 -25.33745 -23.75913 -21.95744 -20.61971 -20.08406 -18.75857 -18.19041 -17.69417 -17.50014 -16.71301 -16.55957 -16.00532 -15.80379 -15.21765 -15.05516 -14.84610 -14.72042 -14.36381 -14.11565 -14.03272 -13.21652 -13.13397 -12.94360 -12.69591 -12.61552 -12.37982 -12.27895 -12.22830 -12.13655 -11.91628 -11.50872 -11.32657 -10.96878 -10.82384 -10.68393 -10.40977 -10.06236 -9.92487 -8.02077 -6.19077 1.29512 1.42830 1.44522 1.53857 1.63098 2.28297 2.38552 2.50872 3.20819 3.49366 3.54007 3.79410 3.88621 4.18995 4.25390 4.42375 4.47982 4.54792 4.68883 4.78228 4.86857 4.94233 5.04165 5.07907 5.09717 5.12133 5.17658 5.33648 5.36800 5.57789 5.63707 5.65259 5.81691 6.09340 6.18844 6.22467 6.41282 6.62897 6.84911 7.11871 7.24973 7.48476 8.97325 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040517 B = 0.004376 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.899648 B = 6396.326396 C = 6719.402532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.116 4.116 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.951 3.049 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.146 3.854 13 N -0.698 5.698 14 C 0.512 3.488 15 O -0.583 6.583 16 C -0.121 4.121 17 H 0.152 0.848 18 C -0.102 4.102 19 C -0.129 4.129 20 C 0.100 3.900 21 N -0.705 5.705 22 C 0.522 3.478 23 O -0.584 6.584 24 H 0.063 0.937 25 H 0.030 0.970 26 H 0.024 0.976 27 H 0.011 0.989 28 H 0.028 0.972 29 H 0.063 0.937 30 H 0.260 0.740 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.409 0.591 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 2.672 -22.581 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.174 4.174 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.777 3.223 9 H -0.206 1.206 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.022 3.978 13 N -0.349 5.349 14 C 0.298 3.702 15 O -0.464 6.464 16 C -0.145 4.145 17 H 0.169 0.831 18 C -0.140 4.140 19 C -0.167 4.167 20 C -0.023 4.023 21 N -0.356 5.356 22 C 0.307 3.693 23 O -0.464 6.464 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.248 0.752 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.973 2.185 -22.004 22.133 hybrid contribution 0.354 0.251 1.406 1.472 sum -0.619 2.436 -20.597 20.750 Atomic orbital electron populations 1.21641 0.97007 0.98821 1.00113 1.18357 0.93405 0.92676 0.90550 1.21625 0.97422 0.98345 0.99977 1.21261 1.31920 1.12160 0.91439 0.93504 1.25527 0.95086 0.95589 1.01172 1.69938 1.37026 1.23352 1.23642 0.85674 0.78035 0.79039 0.79546 1.20582 1.20635 1.19780 1.21309 0.96785 0.95253 0.84477 1.46276 1.51999 1.31282 1.05366 1.20587 0.80153 0.84268 0.85186 1.90645 1.40000 1.28442 1.87301 1.21521 1.05227 0.92488 0.95225 0.83088 1.21536 1.02116 0.99384 0.91004 1.21954 1.01201 0.95100 0.98396 1.21791 1.01213 0.96337 0.82964 1.45396 1.63777 1.16498 1.09961 1.19766 0.77467 0.88303 0.83744 1.90810 1.57341 1.66546 1.31729 0.91838 0.95147 0.95684 0.96953 0.95332 0.91836 0.93000 0.94876 0.93547 0.75235 0.91903 0.89405 0.89535 0.86486 0.86871 0.90715 0.75579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 2 C 0.05 2.57 0.50 -52.93 -0.03 2.54 16 3 C -0.12 -5.91 8.07 71.98 0.58 -5.32 16 4 C -0.53 -29.52 8.01 25.60 0.21 -29.32 16 5 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 6 C 0.03 1.42 5.15 84.66 0.44 1.86 16 7 N -0.90 -50.41 9.35 21.45 0.20 -50.21 16 8 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.15 6.84 4.50 86.38 0.39 7.23 16 13 N -0.70 -28.16 4.44 -463.09 -2.06 -30.22 16 14 C 0.51 18.73 7.06 87.66 0.62 19.35 16 15 O -0.58 -24.77 15.79 -3.04 -0.05 -24.82 16 16 C -0.12 -2.99 2.78 -12.43 -0.03 -3.02 16 17 H 0.15 2.95 8.14 -2.39 -0.02 2.93 16 18 C -0.10 -1.86 4.78 30.73 0.15 -1.71 16 19 C -0.13 -1.11 6.02 30.68 0.18 -0.93 16 20 C 0.10 0.86 7.17 86.49 0.62 1.48 16 21 N -0.71 -11.96 5.45 -467.30 -2.55 -14.50 16 22 C 0.52 13.65 7.28 87.71 0.64 14.29 16 23 O -0.58 -20.76 15.56 -3.02 -0.05 -20.81 16 24 H 0.06 3.35 6.08 -2.39 -0.01 3.34 16 25 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 26 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.03 1.34 6.86 -2.39 -0.02 1.32 16 29 H 0.06 3.49 6.06 -2.39 -0.01 3.48 16 30 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 31 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.21 16 33 H 0.41 16.13 4.83 -92.71 -0.45 15.69 16 34 H 0.06 1.40 7.72 -2.39 -0.02 1.39 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 0.60 8.12 -2.39 -0.02 0.58 16 37 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.41 6.18 8.80 -92.71 -0.82 5.36 16 Total: -1.00 -71.18 315.53 1.66 -69.52 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.21 Total: 23.62 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 4.34 Total: 1.35 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -4.40 Total: -94.93 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.10 Total: -45.63 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.18 1.66 -69.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601627440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.916 kcal (2) G-P(sol) polarization free energy of solvation -71.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds