Wall clock time and date at job start Mon Mar 30 2020 00:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99828 * 2 1 4 4 C 1.50709 * 109.47167 * 179.97438 * 3 2 1 5 5 C 1.35446 * 126.77503 * 89.99386 * 4 3 2 6 6 C 1.41381 * 103.98574 * 180.22777 * 5 4 3 7 7 C 1.50700 * 126.80042 * 179.77431 * 6 5 4 8 8 N 1.46904 * 109.47107 * 95.00326 * 7 6 5 9 9 C 1.46900 * 110.99956 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46987 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46855 * 299.99607 * 10 9 8 12 12 C 1.52995 * 109.47318 * 59.99680 * 10 9 8 13 13 C 1.50702 * 109.47005 * 180.02562 * 10 9 8 14 14 H 1.08000 * 119.99772 * 1.23961 * 13 10 9 15 15 C 1.37876 * 119.99760 * 181.23849 * 13 10 9 16 16 N 1.31521 * 119.99740 * 194.10809 * 15 13 10 17 17 Si 1.86794 * 120.00213 * 14.11244 * 15 13 10 18 18 H 1.48505 * 109.47233 * 84.53236 * 17 15 13 19 19 H 1.48502 * 109.47090 * 204.53155 * 17 15 13 20 20 H 1.48498 * 109.46955 * 324.53202 * 17 15 13 21 21 N 1.30171 * 106.39170 * 359.63869 * 6 5 4 22 22 O 1.20916 * 111.60668 * 0.38926 * 21 6 5 23 23 H 1.09007 * 109.46955 * 300.00633 * 1 2 3 24 24 H 1.08996 * 109.47057 * 60.00244 * 1 2 3 25 25 H 1.08997 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47618 * 59.99700 * 3 2 1 27 27 H 1.08996 * 109.47328 * 299.99429 * 3 2 1 28 28 H 1.08006 * 128.00799 * 359.97348 * 5 4 3 29 29 H 1.09000 * 109.46649 * 214.99814 * 7 6 5 30 30 H 1.09000 * 109.47247 * 334.99985 * 7 6 5 31 31 H 1.00901 * 110.99973 * 303.94880 * 8 7 6 32 32 H 1.09001 * 109.46784 * 299.99966 * 9 8 7 33 33 H 1.08993 * 109.47306 * 59.99747 * 9 8 7 34 34 H 1.09008 * 109.47045 * 69.52297 * 11 10 9 35 35 H 1.09000 * 109.47162 * 189.51554 * 11 10 9 36 36 H 1.09003 * 109.47432 * 309.52079 * 11 10 9 37 37 H 1.09005 * 109.46714 * 60.00157 * 12 10 9 38 38 H 1.08997 * 109.47038 * 179.97438 * 12 10 9 39 39 H 1.08999 * 109.47221 * 300.00277 * 12 10 9 40 40 H 0.96998 * 119.99600 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.3214 1.1222 -1.0839 6 6 5.6201 1.0141 -0.5358 7 6 6.9155 0.9042 -1.2980 8 7 7.5126 2.2385 -1.4436 9 6 8.7801 2.1701 -2.1830 10 6 9.3708 3.5755 -2.3135 11 6 8.3883 4.4735 -3.0678 12 6 9.6238 4.1538 -0.9199 13 6 10.6708 3.5054 -3.0726 14 1 11.0289 2.5565 -3.4438 15 6 11.4030 4.6527 -3.2931 16 7 12.3771 4.6515 -4.1767 17 14 11.0116 6.2088 -2.3367 18 1 11.7100 6.1735 -1.0266 19 1 11.4676 7.3924 -3.1090 20 1 9.5460 6.2975 -2.1142 21 7 5.4755 1.0311 0.7578 22 8 4.3122 1.1233 1.0745 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 4.0392 1.1439 -2.1262 29 1 7.6028 0.2559 -0.7547 30 1 6.7219 0.4831 -2.2846 31 1 6.8689 2.8763 -1.8873 32 1 9.4803 1.5306 -1.6454 33 1 8.6000 1.7577 -3.1757 34 1 7.5148 4.6615 -2.4432 35 1 8.8726 5.4197 -3.3091 36 1 8.0773 3.9794 -3.9882 37 1 10.3239 3.5139 -0.3826 38 1 10.0451 5.1548 -1.0130 39 1 8.6833 4.2045 -0.3713 40 1 12.8920 5.4587 -4.3321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603432206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:56 Heat of formation + Delta-G solvation = 10.647102 kcal Electronic energy + Delta-G solvation = -20300.422208 eV Core-core repulsion = 17118.754311 eV Total energy + Delta-G solvation = -3181.667898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.97966 -39.06793 -38.88612 -36.55060 -34.53714 -33.67719 -33.09556 -28.69397 -28.26460 -27.92421 -27.06938 -26.43567 -25.09423 -23.92482 -21.30364 -20.55396 -18.75652 -18.48513 -18.05506 -17.39421 -17.15912 -16.90944 -16.67247 -16.03316 -15.56185 -15.24157 -14.86418 -14.76632 -14.45382 -14.16041 -13.87943 -13.80090 -13.70833 -13.30166 -12.94684 -12.63991 -12.37929 -12.33133 -12.14032 -11.98644 -11.89192 -11.63759 -11.20338 -10.95137 -10.70347 -10.58076 -10.53573 -10.33170 -9.33619 -8.29768 -6.28406 0.37151 1.15952 1.35459 1.38503 1.48953 2.04514 2.35059 2.98902 3.07538 3.14781 3.38277 3.63336 4.02173 4.10650 4.19271 4.24617 4.37778 4.45080 4.48544 4.56990 4.57918 4.63140 4.67054 4.76616 4.85327 4.91228 4.93820 4.94797 5.04408 5.06584 5.19263 5.28157 5.56656 5.73164 5.83269 6.05522 6.11026 6.32931 6.49464 6.77838 7.29388 7.36807 8.87302 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042428 B = 0.003327 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.786633 B = 8414.561091 C = 8486.467058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.145 3.855 4 C -0.042 4.042 5 C -0.201 4.201 6 C 0.012 3.988 7 C 0.137 3.863 8 N -0.684 5.684 9 C 0.098 3.902 10 C 0.036 3.964 11 C -0.140 4.140 12 C -0.132 4.132 13 C -0.512 4.512 14 H 0.033 0.967 15 C 0.018 3.982 16 N -0.947 5.947 17 Si 0.942 3.058 18 H -0.289 1.289 19 H -0.315 1.315 20 H -0.213 1.213 21 N -0.375 5.375 22 O 0.098 5.902 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.199 0.801 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.346 0.654 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.023 0.977 39 H 0.064 0.936 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.047 -5.925 7.034 28.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.068 3.932 4 C -0.106 4.106 5 C -0.223 4.223 6 C -0.146 4.146 7 C 0.007 3.993 8 N -0.318 5.318 9 C -0.030 4.030 10 C 0.035 3.965 11 C -0.198 4.198 12 C -0.189 4.189 13 C -0.550 4.550 14 H 0.051 0.949 15 C -0.179 4.179 16 N -0.587 5.587 17 Si 0.772 3.228 18 H -0.217 1.217 19 H -0.244 1.244 20 H -0.138 1.138 21 N -0.078 5.078 22 O 0.029 5.971 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.132 0.868 28 H 0.216 0.784 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.165 0.835 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.656 -6.112 8.591 27.738 hybrid contribution 0.123 0.625 -1.420 1.556 sum -25.533 -5.487 7.171 27.082 Atomic orbital electron populations 1.23003 0.78045 1.04181 1.01746 1.87923 1.22434 1.27338 1.95850 1.20871 0.81281 0.85920 1.05081 1.24588 0.96277 1.03924 0.85791 1.22813 0.90305 1.06823 1.02334 1.23660 0.97808 1.03281 0.89849 1.20177 0.89224 0.92128 0.97765 1.60438 1.06311 1.08846 1.56214 1.21667 0.89602 0.97298 0.94480 1.18465 0.93025 0.92762 0.92280 1.22198 0.98447 0.99545 0.99592 1.22116 1.00496 0.98018 0.98290 1.21193 1.05740 0.94024 1.34048 0.94902 1.25764 0.94946 1.02092 0.95110 1.70104 1.24358 1.30070 1.34139 0.86371 0.81120 0.78066 0.77194 1.21673 1.24428 1.13752 1.73884 0.97438 1.18796 1.17703 1.84806 1.11568 1.66627 1.34091 0.92404 0.92027 0.88702 0.89048 0.86821 0.78414 0.90345 0.91022 0.83453 0.92770 0.95630 0.92302 0.94238 0.93500 0.94435 0.95877 0.91687 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.43 16 2 O -0.42 -6.30 10.69 -148.98 -1.59 -7.89 16 3 C 0.15 1.72 6.50 71.24 0.46 2.18 16 4 C -0.04 -0.84 7.12 25.04 0.18 -0.66 16 5 C -0.20 -4.08 11.06 22.40 0.25 -3.83 16 6 C 0.01 0.33 6.84 43.58 0.30 0.63 16 7 C 0.14 3.73 6.27 85.56 0.54 4.26 16 8 N -0.68 -21.64 5.71 -517.93 -2.96 -24.60 16 9 C 0.10 3.74 4.57 86.30 0.39 4.14 16 10 C 0.04 1.58 0.57 -52.93 -0.03 1.55 16 11 C -0.14 -5.58 7.24 71.98 0.52 -5.06 16 12 C -0.13 -5.71 7.54 71.98 0.54 -5.16 16 13 C -0.51 -28.63 8.62 25.60 0.22 -28.40 16 14 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 15 C 0.02 1.05 5.32 84.65 0.45 1.50 16 16 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 17 Si 0.94 45.55 22.79 68.60 1.56 47.11 16 18 H -0.29 -13.97 7.10 99.48 0.71 -13.26 16 19 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 20 H -0.21 -9.11 4.65 99.48 0.46 -8.64 16 21 N -0.38 -11.42 12.07 -49.57 -0.60 -12.02 16 22 O 0.10 2.58 11.20 71.70 0.80 3.39 16 23 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 24 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.20 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.35 10.06 6.99 -89.69 -0.63 9.44 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.96 7.06 -2.38 -0.02 1.94 16 35 H 0.04 1.68 4.30 -2.39 -0.01 1.67 16 36 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 37 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.02 1.02 2.26 -2.39 -0.01 1.02 16 39 H 0.06 2.51 7.60 -2.39 -0.02 2.49 16 40 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -71.06 320.02 2.76 -68.30 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.17 Total: 12.40 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 5.07 Total: -27.42 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -3.25 Total: -95.89 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.79 Total: -4.50 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.56 Total: 47.11 kcal Total: -71.06 2.76 -68.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603432206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.947 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds