Wall clock time and date at job start Mon Mar 30 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47124 * 2 1 4 4 N 1.46500 * 109.47039 * 119.99684 * 2 1 3 5 5 C 1.46497 * 120.00172 * 123.92685 * 4 2 1 6 6 C 1.50705 * 109.47205 * 269.99939 * 5 4 2 7 7 H 1.07996 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99762 * 180.27113 * 6 5 4 9 9 N 1.31520 * 120.00176 * 359.72924 * 8 6 5 10 10 Si 1.86802 * 119.99873 * 179.72790 * 8 6 5 11 11 H 1.48502 * 109.47126 * 59.99826 * 10 8 6 12 12 H 1.48499 * 109.47318 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47133 * 300.00332 * 10 8 6 14 14 C 1.34780 * 120.00173 * 303.93025 * 4 2 1 15 15 O 1.21282 * 119.99650 * 355.61934 * 14 4 2 16 16 C 1.50700 * 120.00229 * 175.62142 * 14 4 2 17 17 H 1.08999 * 110.86174 * 37.53124 * 16 14 4 18 18 C 1.54634 * 110.96536 * 273.74634 * 16 14 4 19 19 C 1.51345 * 104.16372 * 217.10634 * 18 16 14 20 20 O 1.21285 * 124.92751 * 196.19943 * 19 18 16 21 21 N 1.34423 * 110.12964 * 16.20622 * 19 18 16 22 22 C 1.46496 * 124.34568 * 180.41472 * 21 19 18 23 23 C 1.46757 * 111.30147 * 0.43568 * 21 19 18 24 24 H 1.08997 * 109.47044 * 306.72089 * 1 2 3 25 25 H 1.08992 * 109.46893 * 66.72234 * 1 2 3 26 26 H 1.08998 * 109.47286 * 186.71967 * 1 2 3 27 27 H 1.09000 * 109.47418 * 239.99418 * 2 1 3 28 28 H 1.09004 * 109.46960 * 173.42572 * 3 2 1 29 29 H 1.08997 * 109.46864 * 293.41762 * 3 2 1 30 30 H 1.08992 * 109.47068 * 53.42426 * 3 2 1 31 31 H 1.09002 * 109.47634 * 149.99756 * 5 4 2 32 32 H 1.08997 * 109.47198 * 29.99992 * 5 4 2 33 33 H 0.96996 * 119.99720 * 179.97438 * 9 8 6 34 34 H 1.08997 * 110.48523 * 335.76004 * 18 16 14 35 35 H 1.09001 * 110.48828 * 98.41004 * 18 16 14 36 36 H 1.08998 * 109.47286 * 270.02102 * 22 21 19 37 37 H 1.08994 * 109.47445 * 30.02411 * 22 21 19 38 38 H 1.09008 * 109.46759 * 150.02286 * 22 21 19 39 39 H 1.09004 * 110.24495 * 223.98571 * 23 21 19 40 40 H 1.08996 * 110.25187 * 101.98391 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.9301 -1.8295 1.0636 6 6 2.1312 -3.1034 0.9620 7 1 1.0523 -3.0679 0.9927 8 6 2.7780 -4.3144 0.8350 9 7 4.0919 -4.3574 0.7972 10 14 1.7880 -5.8941 0.7168 11 1 0.9010 -5.8345 -0.4728 12 1 2.7124 -7.0492 0.5883 13 1 0.9634 -6.0544 1.9414 14 6 1.6287 -0.2780 2.4188 15 8 0.9383 0.7125 2.5330 16 6 2.0510 -1.0476 3.6437 17 1 3.0701 -1.4189 3.5367 18 6 1.0682 -2.2051 3.9360 19 6 0.9836 -2.2466 5.4465 20 8 0.5446 -3.1747 6.0922 21 7 1.4655 -1.1054 5.9684 22 6 1.5389 -0.8190 7.4032 23 6 1.9082 -0.1832 4.9161 24 1 -0.3633 0.6144 0.8237 25 1 -0.3633 0.4061 -0.9440 26 1 -0.3634 -1.0206 0.1202 27 1 1.8934 -0.5139 -0.8899 28 1 3.1237 1.4447 0.1177 29 1 1.7760 1.9212 -0.9430 30 1 1.5838 1.9891 0.8252 31 1 3.5810 -1.8775 1.9366 32 1 3.5354 -1.7077 0.1655 33 1 4.5469 -5.2094 0.7082 34 1 0.0898 -1.9929 3.5049 35 1 1.4607 -3.1456 3.5494 36 1 0.6166 -0.3354 7.7248 37 1 1.6718 -1.7505 7.9534 38 1 2.3832 -0.1578 7.5989 39 1 2.8686 0.2588 5.1815 40 1 1.1633 0.5971 4.7604 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608815363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:16 Heat of formation + Delta-G solvation = -71.382383 kcal Electronic energy + Delta-G solvation = -21864.378008 eV Core-core repulsion = 18679.153045 eV Total energy + Delta-G solvation = -3185.224963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46568 -39.01270 -36.14221 -35.32442 -33.50265 -32.47954 -31.19503 -27.44133 -27.01027 -26.70872 -26.57689 -23.39224 -22.74607 -20.90179 -19.24865 -18.16718 -16.74586 -16.67151 -16.36130 -15.47811 -15.31768 -14.97335 -14.51869 -14.25301 -13.62820 -13.39881 -13.26774 -12.95826 -12.88738 -12.56876 -12.33581 -12.19993 -12.12715 -11.77488 -11.60355 -11.47662 -11.07397 -10.94714 -10.93353 -10.85402 -10.69859 -10.38754 -10.09356 -9.77962 -9.57320 -8.92182 -8.57493 -8.49095 -7.80053 -6.22847 -4.30261 2.88959 3.14378 3.24466 3.25672 3.29833 3.34874 3.79309 4.30635 4.65899 4.84581 5.10341 5.12569 5.28121 5.36899 5.44230 5.47470 5.64375 5.66136 5.73842 5.74604 5.81503 5.96233 6.02721 6.15402 6.28680 6.31435 6.39535 6.47951 6.67440 6.70595 6.73562 6.77839 7.12139 7.29342 7.49595 7.71691 7.99252 8.26216 8.44418 8.73424 8.90926 9.37998 10.83599 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.009179 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.996462 B = 3049.619834 C = 4657.330534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 C -0.164 4.164 4 N -0.586 5.586 5 C 0.235 3.765 6 C -0.538 4.538 7 H 0.063 0.937 8 C 0.068 3.932 9 N -0.890 5.890 10 Si 0.890 3.110 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.531 3.469 15 O -0.566 6.566 16 C -0.116 4.116 17 H 0.116 0.884 18 C -0.130 4.130 19 C 0.521 3.479 20 O -0.539 6.539 21 N -0.627 5.627 22 C 0.098 3.902 23 C 0.115 3.885 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 8.946 4.117 9.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.315 5.315 5 C 0.115 3.885 6 C -0.576 4.576 7 H 0.081 0.919 8 C -0.136 4.136 9 N -0.528 5.528 10 Si 0.717 3.283 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.318 3.682 15 O -0.448 6.448 16 C -0.138 4.138 17 H 0.134 0.866 18 C -0.170 4.170 19 C 0.309 3.691 20 O -0.416 6.416 21 N -0.362 5.362 22 C -0.044 4.044 23 C -0.008 4.008 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.024 8.842 4.549 10.147 hybrid contribution -0.252 -1.073 -0.223 1.124 sum -2.275 7.769 4.326 9.178 Atomic orbital electron populations 1.22157 0.95565 1.02560 1.01928 1.20861 0.94214 0.92333 0.88208 1.22193 1.00959 0.96915 1.02106 1.48325 1.46603 1.32408 1.04180 1.19522 0.88351 0.82148 0.98442 1.21425 0.93613 0.90761 1.51804 0.91922 1.24915 0.94860 0.99139 0.94666 1.69898 1.07186 1.26628 1.49072 0.86664 0.80007 0.82492 0.79109 1.20122 1.21157 1.19670 1.19817 0.79875 0.83974 0.84559 1.90543 1.40377 1.27232 1.86641 1.22148 1.02786 0.95973 0.92854 0.86605 1.22252 1.01152 1.01525 0.92056 1.21122 0.75892 0.81140 0.90922 1.90679 1.46940 1.36566 1.67438 1.48206 1.63421 1.18073 1.06490 1.21476 1.01350 1.01856 0.79682 1.22067 1.00982 0.92380 0.85388 0.90853 0.92941 0.92455 0.89723 0.93057 0.92753 0.90962 0.94367 0.94560 0.92403 0.88089 0.85479 0.92912 0.90911 0.91241 0.90543 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 8.94 37.16 0.33 -2.36 16 2 C 0.15 2.53 3.27 -67.93 -0.22 2.31 16 3 C -0.16 -2.47 9.08 37.16 0.34 -2.13 16 4 N -0.59 -11.14 2.41 -167.47 -0.40 -11.54 16 5 C 0.24 5.11 4.89 -5.19 -0.03 5.09 16 6 C -0.54 -12.91 8.07 -34.44 -0.28 -13.19 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.55 13.29 55.43 0.74 -22.82 16 10 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 C 0.53 9.73 6.24 -10.98 -0.07 9.66 16 15 O -0.57 -10.86 11.96 5.56 0.07 -10.79 16 16 C -0.12 -1.95 2.81 -90.14 -0.25 -2.20 16 17 H 0.12 1.98 6.20 -51.93 -0.32 1.66 16 18 C -0.13 -2.35 6.01 -26.71 -0.16 -2.51 16 19 C 0.52 9.58 8.02 -10.83 -0.09 9.50 16 20 O -0.54 -11.61 17.60 5.55 0.10 -11.52 16 21 N -0.63 -9.49 3.33 -180.27 -0.60 -10.09 16 22 C 0.10 1.15 10.96 59.84 0.66 1.81 16 23 C 0.11 1.64 6.83 -3.13 -0.02 1.62 16 24 H 0.07 1.28 6.26 -51.93 -0.32 0.96 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.46 7.83 -51.93 -0.41 1.06 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.18 6.49 -51.93 -0.34 0.84 16 31 H 0.04 0.85 6.00 -51.93 -0.31 0.54 16 32 H 0.04 0.84 7.95 -51.93 -0.41 0.43 16 33 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.10 1.83 7.89 -51.93 -0.41 1.42 16 35 H 0.13 2.56 7.23 -51.93 -0.38 2.18 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 38 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.33 6.85 -51.93 -0.36 0.98 16 LS Contribution 323.77 15.07 4.88 4.88 Total: -1.00 -28.45 323.77 -6.30 -34.75 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.17 Total: 2.78 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 0.11 Total: 9.21 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.27 Total: -44.45 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.16 Total: -22.31 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.45 -6.30 -34.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608815363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.628 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds