Wall clock time and date at job start Mon Mar 30 2020 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47124 * 2 1 4 4 N 1.46500 * 109.47039 * 119.99684 * 2 1 3 5 5 C 1.46497 * 120.00172 * 123.92685 * 4 2 1 6 6 C 1.50705 * 109.47205 * 269.99939 * 5 4 2 7 7 H 1.07996 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99762 * 180.27113 * 6 5 4 9 9 N 1.31520 * 120.00176 * 359.72924 * 8 6 5 10 10 Si 1.86802 * 119.99873 * 179.72790 * 8 6 5 11 11 H 1.48502 * 109.47126 * 59.99826 * 10 8 6 12 12 H 1.48499 * 109.47318 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47133 * 300.00332 * 10 8 6 14 14 C 1.34780 * 120.00173 * 303.93025 * 4 2 1 15 15 O 1.21282 * 119.99650 * 355.61934 * 14 4 2 16 16 C 1.50700 * 120.00229 * 175.62142 * 14 4 2 17 17 H 1.08999 * 110.86174 * 37.53124 * 16 14 4 18 18 C 1.54634 * 110.96536 * 273.74634 * 16 14 4 19 19 C 1.51345 * 104.16372 * 217.10634 * 18 16 14 20 20 O 1.21285 * 124.92751 * 196.19943 * 19 18 16 21 21 N 1.34423 * 110.12964 * 16.20622 * 19 18 16 22 22 C 1.46496 * 124.34568 * 180.41472 * 21 19 18 23 23 C 1.46757 * 111.30147 * 0.43568 * 21 19 18 24 24 H 1.08997 * 109.47044 * 306.72089 * 1 2 3 25 25 H 1.08992 * 109.46893 * 66.72234 * 1 2 3 26 26 H 1.08998 * 109.47286 * 186.71967 * 1 2 3 27 27 H 1.09000 * 109.47418 * 239.99418 * 2 1 3 28 28 H 1.09004 * 109.46960 * 173.42572 * 3 2 1 29 29 H 1.08997 * 109.46864 * 293.41762 * 3 2 1 30 30 H 1.08992 * 109.47068 * 53.42426 * 3 2 1 31 31 H 1.09002 * 109.47634 * 149.99756 * 5 4 2 32 32 H 1.08997 * 109.47198 * 29.99992 * 5 4 2 33 33 H 0.96996 * 119.99720 * 179.97438 * 9 8 6 34 34 H 1.08997 * 110.48523 * 335.76004 * 18 16 14 35 35 H 1.09001 * 110.48828 * 98.41004 * 18 16 14 36 36 H 1.08998 * 109.47286 * 270.02102 * 22 21 19 37 37 H 1.08994 * 109.47445 * 30.02411 * 22 21 19 38 38 H 1.09008 * 109.46759 * 150.02286 * 22 21 19 39 39 H 1.09004 * 110.24495 * 223.98571 * 23 21 19 40 40 H 1.08996 * 110.25187 * 101.98391 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.9301 -1.8295 1.0636 6 6 2.1312 -3.1034 0.9620 7 1 1.0523 -3.0679 0.9927 8 6 2.7780 -4.3144 0.8350 9 7 4.0919 -4.3574 0.7972 10 14 1.7880 -5.8941 0.7168 11 1 0.9010 -5.8345 -0.4728 12 1 2.7124 -7.0492 0.5883 13 1 0.9634 -6.0544 1.9414 14 6 1.6287 -0.2780 2.4188 15 8 0.9383 0.7125 2.5330 16 6 2.0510 -1.0476 3.6437 17 1 3.0701 -1.4189 3.5367 18 6 1.0682 -2.2051 3.9360 19 6 0.9836 -2.2466 5.4465 20 8 0.5446 -3.1747 6.0922 21 7 1.4655 -1.1054 5.9684 22 6 1.5389 -0.8190 7.4032 23 6 1.9082 -0.1832 4.9161 24 1 -0.3633 0.6144 0.8237 25 1 -0.3633 0.4061 -0.9440 26 1 -0.3634 -1.0206 0.1202 27 1 1.8934 -0.5139 -0.8899 28 1 3.1237 1.4447 0.1177 29 1 1.7760 1.9212 -0.9430 30 1 1.5838 1.9891 0.8252 31 1 3.5810 -1.8775 1.9366 32 1 3.5354 -1.7077 0.1655 33 1 4.5469 -5.2094 0.7082 34 1 0.0898 -1.9929 3.5049 35 1 1.4607 -3.1456 3.5494 36 1 0.6166 -0.3354 7.7248 37 1 1.6718 -1.7505 7.9534 38 1 2.3832 -0.1578 7.5989 39 1 2.8686 0.2588 5.1815 40 1 1.1633 0.5971 4.7604 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608815363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:15 Heat of formation + Delta-G solvation = -88.060352 kcal Electronic energy + Delta-G solvation = -21865.101219 eV Core-core repulsion = 18679.153045 eV Total energy + Delta-G solvation = -3185.948174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.87913 -40.47543 -37.59334 -36.84804 -35.12827 -34.02551 -32.65628 -29.00487 -28.60152 -27.97957 -27.73411 -24.96568 -24.35177 -22.27448 -20.59647 -19.64380 -18.53104 -18.19714 -17.79431 -16.91581 -16.76621 -16.35035 -16.20992 -15.81400 -14.97424 -14.72302 -14.63264 -14.41537 -14.26809 -14.13451 -13.86607 -13.48962 -13.30345 -13.17547 -13.15017 -12.82983 -12.72558 -12.66216 -12.35935 -12.27783 -12.11501 -12.05640 -11.69908 -11.57315 -11.06227 -10.59238 -10.32894 -9.73727 -9.39641 -8.17576 -6.28636 1.41451 1.43049 1.45699 1.49509 1.71134 1.99428 2.31479 2.45077 3.13674 3.28667 3.53242 3.72838 3.94870 4.07526 4.29001 4.32985 4.41207 4.46190 4.46482 4.61260 4.68139 4.76852 4.84679 4.85299 4.93584 4.96531 5.04320 5.07772 5.12700 5.25969 5.38007 5.47539 5.51562 5.72622 5.96327 5.96730 6.10201 6.62877 6.88086 7.05066 7.34462 7.45687 8.87346 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.009179 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.996462 B = 3049.619834 C = 4657.330534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 C -0.152 4.152 4 N -0.590 5.590 5 C 0.250 3.750 6 C -0.531 4.531 7 H 0.055 0.945 8 C 0.028 3.972 9 N -0.917 5.917 10 Si 0.936 3.064 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.531 3.469 15 O -0.570 6.570 16 C -0.114 4.114 17 H 0.112 0.888 18 C -0.126 4.126 19 C 0.515 3.485 20 O -0.578 6.578 21 N -0.617 5.617 22 C 0.091 3.909 23 C 0.123 3.877 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.022 0.978 33 H 0.266 0.734 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 10.516 4.414 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 C -0.210 4.210 4 N -0.320 5.320 5 C 0.129 3.871 6 C -0.570 4.570 7 H 0.074 0.926 8 C -0.172 4.172 9 N -0.557 5.557 10 Si 0.763 3.237 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.319 3.681 15 O -0.452 6.452 16 C -0.136 4.136 17 H 0.130 0.870 18 C -0.166 4.166 19 C 0.304 3.696 20 O -0.459 6.459 21 N -0.350 5.350 22 C -0.050 4.050 23 C 0.001 3.999 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.088 10.463 4.848 11.719 hybrid contribution -0.258 -1.485 -0.322 1.541 sum -2.346 8.979 4.526 10.325 Atomic orbital electron populations 1.22070 0.94926 1.01293 1.03013 1.21101 0.94746 0.93469 0.87328 1.22079 1.00626 0.95184 1.03094 1.48307 1.46475 1.31898 1.05281 1.19165 0.88247 0.82314 0.97407 1.21602 0.93373 0.91699 1.50329 0.92634 1.25454 0.95467 1.01372 0.94921 1.69970 1.08135 1.26992 1.50585 0.85933 0.78901 0.80087 0.78787 1.19676 1.21091 1.20187 1.19978 0.79553 0.83890 0.84655 1.90542 1.40490 1.27480 1.86724 1.22120 1.01965 0.95813 0.93663 0.86955 1.22092 1.01130 1.00934 0.92473 1.21083 0.76020 0.81733 0.90782 1.90651 1.49017 1.38177 1.68026 1.48304 1.61647 1.16861 1.08227 1.21777 1.03640 1.02386 0.77155 1.22118 1.02727 0.91371 0.83710 0.91888 0.90171 0.94329 0.90043 0.93171 0.90113 0.92041 0.94837 0.95998 0.92532 0.88578 0.87988 0.91542 0.91700 0.87704 0.87142 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 8.94 71.98 0.64 -4.24 16 2 C 0.14 4.51 3.27 44.99 0.15 4.66 16 3 C -0.15 -4.26 9.08 71.98 0.65 -3.61 16 4 N -0.59 -22.13 2.41 -802.13 -1.93 -24.06 16 5 C 0.25 10.90 4.89 85.64 0.42 11.32 16 6 C -0.53 -25.72 8.07 25.60 0.21 -25.51 16 7 H 0.06 2.73 7.81 -2.91 -0.02 2.71 16 8 C 0.03 1.44 5.46 84.65 0.46 1.90 16 9 N -0.92 -48.90 13.29 21.45 0.28 -48.62 16 10 Si 0.94 41.63 29.54 68.60 2.03 43.65 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 C 0.53 18.99 6.24 87.66 0.55 19.54 16 15 O -0.57 -21.01 11.96 -3.04 -0.04 -21.05 16 16 C -0.11 -3.73 2.81 -10.48 -0.03 -3.76 16 17 H 0.11 3.78 6.20 -2.39 -0.01 3.76 16 18 C -0.13 -4.60 6.01 30.61 0.18 -4.42 16 19 C 0.52 18.86 8.02 87.92 0.71 19.56 16 20 O -0.58 -25.18 17.60 -3.05 -0.05 -25.24 16 21 N -0.62 -17.50 3.33 -842.83 -2.81 -20.31 16 22 C 0.09 1.88 10.96 127.77 1.40 3.28 16 23 C 0.12 3.21 6.83 86.83 0.59 3.80 16 24 H 0.06 2.11 6.26 -2.39 -0.01 2.10 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 2.74 7.83 -2.39 -0.02 2.72 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.87 6.49 -2.39 -0.02 1.86 16 31 H 0.03 1.51 6.00 -2.39 -0.01 1.49 16 32 H 0.02 1.03 7.95 -2.39 -0.02 1.01 16 33 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 34 H 0.10 3.56 7.89 -2.39 -0.02 3.54 16 35 H 0.10 4.25 7.23 -2.39 -0.02 4.23 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.48 7.93 -2.39 -0.02 1.46 16 38 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.44 6.85 -2.39 -0.02 2.42 16 Total: -1.00 -60.66 323.77 4.44 -56.22 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.02 Total: 16.87 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 5.93 Total: 22.53 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -4.45 Total: -92.98 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -0.09 Total: -46.29 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -60.66 4.44 -56.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608815363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.838 kcal (2) G-P(sol) polarization free energy of solvation -60.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds