Wall clock time and date at job start Mon Mar 30 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 H 1.08992 * 109.47319 * 304.95041 * 3 2 1 5 5 C 1.50705 * 109.47110 * 184.94913 * 3 2 1 6 6 H 1.07998 * 120.00063 * 275.02624 * 5 3 2 7 7 C 1.37875 * 119.99760 * 95.02452 * 5 3 2 8 8 N 1.31518 * 119.99555 * 184.50390 * 7 5 3 9 9 Si 1.86794 * 120.00212 * 4.49673 * 7 5 3 10 10 H 1.48504 * 109.47031 * 85.87564 * 9 7 5 11 11 H 1.48506 * 109.47233 * 205.87620 * 9 7 5 12 12 H 1.48500 * 109.47325 * 325.87677 * 9 7 5 13 13 N 1.46504 * 109.47196 * 64.95197 * 3 2 1 14 14 C 1.34774 * 119.99656 * 275.00143 * 13 3 2 15 15 O 1.21280 * 120.00369 * 4.80158 * 14 13 3 16 16 C 1.50702 * 119.99825 * 184.81137 * 14 13 3 17 17 C 1.50702 * 112.85113 * 56.59206 * 16 14 13 18 18 O 1.21281 * 120.00216 * 245.81745 * 17 16 14 19 19 N 1.34778 * 119.99847 * 65.82317 * 17 16 14 20 20 C 1.46501 * 120.00102 * 185.01733 * 19 17 16 21 21 C 1.53780 * 113.61149 * 285.39938 * 16 14 13 22 22 C 1.53958 * 87.01978 * 220.04765 * 21 16 14 23 23 C 1.53780 * 87.10982 * 25.36346 * 22 21 16 24 24 H 1.08990 * 109.47614 * 300.00092 * 1 2 3 25 25 H 1.09002 * 109.47037 * 60.00313 * 1 2 3 26 26 H 1.09001 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47386 * 239.99448 * 2 1 3 28 28 H 1.09002 * 109.47037 * 119.99687 * 2 1 3 29 29 H 0.97002 * 119.99491 * 180.02562 * 8 7 5 30 30 H 0.97002 * 120.00333 * 94.99789 * 13 3 2 31 31 H 0.97002 * 120.00106 * 5.00899 * 19 17 16 32 32 H 1.08996 * 109.46918 * 299.99455 * 20 19 17 33 33 H 1.08995 * 109.47091 * 59.99039 * 20 19 17 34 34 H 1.09000 * 109.47057 * 179.97438 * 20 19 17 35 35 H 1.09005 * 113.61533 * 334.56638 * 21 16 14 36 36 H 1.08997 * 113.62050 * 105.47345 * 21 16 14 37 37 H 1.09003 * 113.53795 * 270.81096 * 22 21 16 38 38 H 1.08998 * 113.74316 * 139.94339 * 22 21 16 39 39 H 1.09008 * 113.61198 * 220.08984 * 23 22 21 40 40 H 1.09002 * 113.69023 * 89.19984 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6060 1.9813 -0.8423 5 6 3.5420 1.4443 -0.1226 6 1 4.1559 1.3362 0.7594 7 6 4.1324 1.5838 -1.3607 8 7 5.4393 1.4968 -1.4795 9 14 3.0761 1.8964 -2.8693 10 1 2.8240 3.3537 -3.0038 11 1 3.7821 1.4024 -4.0788 12 1 1.7826 1.1816 -2.7246 13 7 1.6513 2.0979 1.2513 14 6 0.4339 2.6647 1.3653 15 8 -0.3717 2.5573 0.4652 16 6 0.0738 3.4323 2.6112 17 6 1.0339 4.5565 2.9040 18 8 1.7314 4.5155 3.8953 19 7 1.1172 5.6074 2.0643 20 6 2.1260 6.6458 2.2883 21 6 -0.2126 2.5346 3.8265 22 6 -1.3644 3.4983 4.1656 23 6 -1.4041 3.8533 2.6698 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8547 1.5953 -2.3505 30 1 2.2702 2.1237 1.9979 31 1 0.5093 5.6761 1.3115 32 1 1.9673 7.1017 3.2656 33 1 3.1201 6.2004 2.2523 34 1 2.0412 7.4079 1.5135 35 1 -0.5465 1.5319 3.5597 36 1 0.5880 2.5324 4.5661 37 1 -1.0633 4.3291 4.8037 38 1 -2.2656 2.9977 4.5196 39 1 -1.5639 4.9142 2.4770 40 1 -2.0641 3.2126 2.0850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613036898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:13 Heat of formation + Delta-G solvation = -62.260369 kcal Electronic energy + Delta-G solvation = -21923.556886 eV Core-core repulsion = 18738.727484 eV Total energy + Delta-G solvation = -3184.829403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.99551 -38.70312 -37.10094 -35.11606 -34.52109 -32.38582 -31.52223 -28.42341 -27.47948 -25.86804 -25.40941 -22.83042 -21.57090 -21.11275 -19.62406 -19.23146 -18.07819 -16.57380 -16.23307 -15.94474 -15.47896 -15.06506 -14.80352 -14.58698 -14.26578 -13.74974 -13.15321 -12.80885 -12.76484 -12.52363 -12.38617 -12.25663 -12.06186 -11.92158 -11.78768 -11.21795 -11.03144 -10.98698 -10.70590 -10.67624 -10.41671 -9.98452 -9.88180 -9.82582 -9.23748 -9.11104 -9.03687 -8.73240 -8.05692 -6.25891 -4.29502 2.57133 3.02849 3.20840 3.27135 3.29979 3.36492 3.89053 4.28573 4.49544 4.55829 4.71405 4.76841 5.03432 5.17854 5.28649 5.50595 5.54002 5.61936 5.77252 5.82976 5.84781 5.99656 6.03046 6.04993 6.08207 6.23926 6.32246 6.39982 6.61240 6.76791 6.93664 6.99342 7.26912 7.31559 7.45380 7.52217 8.08786 8.20933 8.52939 8.74891 8.88050 9.35437 10.85893 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.007287 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.440580 B = 3841.495499 C = 4562.880072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.238 3.762 4 H 0.050 0.950 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.258 1.258 13 N -0.695 5.695 14 C 0.521 3.479 15 O -0.543 6.543 16 C -0.140 4.140 17 C 0.548 3.452 18 O -0.530 6.530 19 N -0.728 5.728 20 C 0.088 3.912 21 C -0.108 4.108 22 C -0.141 4.141 23 C -0.104 4.104 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.268 0.732 30 H 0.395 0.605 31 H 0.404 0.596 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.805 6.526 7.602 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.136 3.864 4 H 0.067 0.933 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.342 5.342 14 C 0.304 3.696 15 O -0.423 6.423 16 C -0.147 4.147 17 C 0.333 3.667 18 O -0.406 6.406 19 N -0.379 5.379 20 C -0.056 4.056 21 C -0.146 4.146 22 C -0.179 4.179 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.238 0.762 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.625 6.430 7.500 15.255 hybrid contribution -0.207 0.265 -0.995 1.050 sum -11.832 6.695 6.505 15.071 Atomic orbital electron populations 1.21928 0.97287 0.98730 1.02158 1.22075 0.93777 0.99363 1.01272 1.19208 0.95414 0.89171 0.82636 0.93261 1.21024 0.88599 1.51729 0.95527 0.90320 1.24936 0.94843 0.93736 0.98764 1.69889 1.09260 1.48279 1.24891 0.86917 0.81280 0.79430 0.82470 1.19999 1.21131 1.18280 1.46672 1.14279 1.55034 1.18197 1.19684 0.83029 0.80099 0.86752 1.90663 1.49347 1.61685 1.40564 1.22393 0.97489 0.96880 0.97923 1.19549 0.82527 0.82084 0.82557 1.90688 1.44203 1.78596 1.27150 1.45677 1.37458 1.23805 1.30968 1.21563 0.92191 0.90203 1.01604 1.22814 0.99268 0.97502 0.94988 1.22901 0.98946 0.99723 0.96316 1.22821 0.92330 1.02114 0.96894 0.92964 0.93118 0.95230 0.92131 0.92946 0.92234 0.77134 0.76200 0.92249 0.91746 0.90642 0.88937 0.89204 0.90022 0.90671 0.91085 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.46 37.15 0.31 -2.49 16 2 C -0.13 -2.71 5.59 -26.73 -0.15 -2.86 16 3 C 0.24 5.56 1.89 -69.08 -0.13 5.42 16 4 H 0.05 1.24 4.80 -51.93 -0.25 0.99 16 5 C -0.53 -14.25 9.05 -34.44 -0.31 -14.56 16 6 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 9 Si 0.87 21.21 27.01 -169.99 -4.59 16.62 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.26 -6.16 6.79 56.52 0.38 -5.78 16 13 N -0.69 -14.07 4.93 -54.93 -0.27 -14.34 16 14 C 0.52 9.57 5.57 -10.99 -0.06 9.50 16 15 O -0.54 -11.10 12.76 5.56 0.07 -11.03 16 16 C -0.14 -2.07 1.04 -156.00 -0.16 -2.24 16 17 C 0.55 8.56 6.32 -10.98 -0.07 8.49 16 18 O -0.53 -9.59 15.95 5.56 0.09 -9.50 16 19 N -0.73 -9.75 5.71 -67.08 -0.38 -10.13 16 20 C 0.09 1.02 10.71 59.85 0.64 1.66 16 21 C -0.11 -1.41 7.10 -25.83 -0.18 -1.59 16 22 C -0.14 -1.54 7.81 -25.83 -0.20 -1.75 16 23 C -0.10 -1.26 6.94 -25.92 -0.18 -1.44 16 24 H 0.05 1.00 5.53 -51.93 -0.29 0.72 16 25 H 0.05 1.05 7.79 -51.93 -0.40 0.64 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.40 7.81 8.56 -40.82 -0.35 7.46 16 31 H 0.40 4.83 8.83 -40.82 -0.36 4.47 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 36 H 0.09 1.23 7.34 -51.93 -0.38 0.85 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.76 8.09 -51.92 -0.42 0.34 16 40 H 0.10 1.32 7.54 -51.93 -0.39 0.93 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -31.32 325.36 -6.22 -37.55 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.22 Total: 10.88 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.59 Total: 0.32 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.12 Total: -49.75 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.16 Total: -20.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.59 Total: 16.62 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.32 -6.22 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613036898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.714 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds