Wall clock time and date at job start Mon Mar 30 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 H 1.09002 * 109.46582 * 55.00210 * 3 2 1 5 5 C 1.50702 * 109.46832 * 175.00254 * 3 2 1 6 6 H 1.07995 * 119.99706 * 120.00174 * 5 3 2 7 7 C 1.37880 * 119.99970 * 299.99830 * 5 3 2 8 8 N 1.31513 * 119.99748 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99965 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47202 * 89.99851 * 9 7 5 11 11 H 1.48499 * 109.46907 * 209.99827 * 9 7 5 12 12 H 1.48501 * 109.47424 * 329.99752 * 9 7 5 13 13 N 1.46501 * 109.46819 * 295.00249 * 3 2 1 14 14 C 1.34774 * 119.99788 * 85.00629 * 13 3 2 15 15 O 1.21276 * 120.00433 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99823 * 179.97438 * 14 13 3 17 17 N 1.46493 * 109.47427 * 179.97438 * 16 14 13 18 18 C 1.46494 * 120.00444 * 269.72511 * 17 16 14 19 19 C 1.34784 * 119.99864 * 89.99800 * 17 16 14 20 20 O 1.21283 * 119.99649 * 359.72839 * 19 17 16 21 21 C 1.50694 * 119.99988 * 179.72721 * 19 17 16 22 22 C 1.52999 * 117.49935 * 248.74753 * 21 19 17 23 23 C 1.53002 * 117.49967 * 180.08613 * 21 19 17 24 24 H 1.09001 * 109.47510 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47134 * 299.99763 * 1 2 3 26 26 H 1.09000 * 109.47293 * 59.99889 * 1 2 3 27 27 H 1.09005 * 109.46621 * 240.00208 * 2 1 3 28 28 H 1.08998 * 109.46840 * 120.00731 * 2 1 3 29 29 H 0.97001 * 119.99391 * 180.02562 * 8 7 5 30 30 H 0.96993 * 119.99682 * 264.99596 * 13 3 2 31 31 H 1.09002 * 109.47046 * 59.99125 * 16 14 13 32 32 H 1.08996 * 109.46984 * 299.99723 * 16 14 13 33 33 H 1.08995 * 109.47693 * 270.27497 * 18 17 16 34 34 H 1.09003 * 109.47006 * 30.27410 * 18 17 16 35 35 H 1.09004 * 109.47665 * 150.27102 * 18 17 16 36 36 H 1.08998 * 115.55176 * 34.42045 * 21 19 17 37 37 H 1.08999 * 117.49667 * 359.97438 * 22 21 19 38 38 H 1.08999 * 117.50191 * 145.02310 * 22 21 19 39 39 H 1.09000 * 117.50371 * 214.98225 * 23 21 19 40 40 H 1.09007 * 117.49486 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8802 1.3361 9 14 3.0964 0.1087 2.5700 10 1 2.8755 -1.3273 2.2633 11 1 3.7938 0.2346 3.8751 12 1 1.7877 0.8073 2.6387 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3395 2.6321 -0.4343 16 6 0.0366 3.3387 -2.6543 17 7 -1.3223 3.8708 -2.5267 18 6 -2.4716 3.0417 -2.8977 19 6 -1.5149 5.1253 -2.0730 20 8 -0.5634 5.8118 -1.7659 21 6 -2.9124 5.6749 -1.9475 22 6 -3.3193 6.7962 -2.9057 23 6 -3.0647 7.1061 -1.4284 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.8770 0.4817 2.1128 30 1 2.2719 2.1231 -1.9977 31 1 0.0679 2.6146 -3.4685 32 1 0.7280 4.1541 -2.8666 33 1 -2.7030 3.1922 -3.9521 34 1 -2.2336 1.9922 -2.7242 35 1 -3.3335 3.3235 -2.2927 36 1 -3.6779 4.9527 -1.6640 37 1 -2.5760 7.1366 -3.6266 38 1 -4.3526 6.8118 -3.2523 39 1 -3.9306 7.3255 -0.8037 40 1 -2.1540 7.6500 -1.1773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:47 Heat of formation + Delta-G solvation = -37.067290 kcal Electronic energy + Delta-G solvation = -21143.394411 eV Core-core repulsion = 17959.657462 eV Total energy + Delta-G solvation = -3183.736949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28535 -38.92295 -36.41866 -35.56982 -34.91733 -32.39011 -31.62861 -29.05799 -27.34346 -26.56409 -23.84867 -22.63614 -22.55958 -20.87884 -19.60395 -18.96287 -17.66612 -17.37242 -16.33738 -16.10270 -15.52980 -15.22692 -14.81605 -14.57378 -14.10865 -13.79719 -13.26847 -13.06898 -12.84205 -12.74398 -12.62889 -12.29991 -12.02739 -11.83259 -11.71160 -11.48780 -11.08259 -10.88379 -10.75647 -10.65350 -10.61676 -9.92239 -9.80372 -9.63501 -9.40524 -9.20308 -8.73620 -8.49731 -8.03963 -6.19154 -4.21266 2.47423 2.88120 3.22967 3.26193 3.36460 3.41928 3.69912 4.08438 4.33226 4.39260 4.60347 4.71814 4.87752 5.08156 5.14089 5.18468 5.29852 5.37121 5.45734 5.48850 5.57628 5.66295 5.78567 5.94605 5.97595 6.00573 6.16149 6.34002 6.63862 6.68978 6.84544 6.94157 7.27646 7.32165 7.33533 7.54323 8.14711 8.23058 8.55513 8.78560 8.97344 9.41908 10.93039 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.004579 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.482473 B = 6113.984910 C = 6315.924636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.700 5.700 14 C 0.487 3.513 15 O -0.542 6.542 16 C 0.093 3.907 17 N -0.594 5.594 18 C 0.085 3.915 19 C 0.548 3.452 20 O -0.535 6.535 21 C -0.190 4.190 22 C -0.153 4.153 23 C -0.149 4.149 24 H 0.030 0.970 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.267 0.733 30 H 0.395 0.605 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.760 5.040 -11.201 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.140 3.860 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.186 1.186 13 N -0.349 5.349 14 C 0.271 3.729 15 O -0.420 6.420 16 C -0.033 4.033 17 N -0.327 5.327 18 C -0.058 4.058 19 C 0.337 3.663 20 O -0.411 6.411 21 C -0.211 4.211 22 C -0.191 4.191 23 C -0.186 4.186 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.632 5.317 -10.243 21.073 hybrid contribution -0.083 -0.802 0.456 0.926 sum -17.714 4.515 -9.787 20.736 Atomic orbital electron populations 1.21856 0.97047 0.98842 1.02121 1.22280 0.94259 1.00024 1.01076 1.19124 0.95603 0.88361 0.82941 0.93467 1.21065 0.88640 1.39661 1.07871 0.90168 1.24835 0.94860 0.95197 0.97630 1.69871 1.08677 1.44552 1.29828 0.86898 0.80990 0.79841 0.80963 1.20263 1.22151 1.18551 1.46129 1.14773 1.56020 1.17989 1.20862 0.82867 0.79314 0.89873 1.90655 1.51663 1.59382 1.40294 1.21380 0.84963 1.00234 0.96756 1.47226 1.06386 1.13611 1.65428 1.21789 0.88453 0.95775 0.99788 1.19601 0.89921 0.80955 0.75872 1.90709 1.43146 1.58678 1.48614 1.22200 0.96262 0.93770 1.08898 1.22930 1.02563 0.99893 0.93673 1.22970 1.04111 0.95304 0.96242 0.95055 0.92977 0.93104 0.92303 0.92815 0.92308 0.77234 0.87906 0.87232 0.92525 0.90945 0.90853 0.85719 0.88337 0.87902 0.87968 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.51 37.16 0.32 -2.49 16 2 C -0.14 -3.06 5.11 -26.73 -0.14 -3.19 16 3 C 0.24 5.86 1.83 -69.08 -0.13 5.73 16 4 H 0.05 1.29 6.64 -51.93 -0.34 0.94 16 5 C -0.53 -14.67 9.31 -34.44 -0.32 -14.99 16 6 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 9 Si 0.88 22.13 24.41 -169.99 -4.15 17.98 16 10 H -0.28 -6.64 6.83 56.52 0.39 -6.25 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16 13 N -0.70 -13.91 5.02 -54.93 -0.28 -14.19 16 14 C 0.49 9.17 6.47 -10.99 -0.07 9.10 16 15 O -0.54 -12.02 13.57 5.56 0.08 -11.95 16 16 C 0.09 1.31 5.89 -5.20 -0.03 1.28 16 17 N -0.59 -8.01 2.36 -182.96 -0.43 -8.44 16 18 C 0.09 0.80 10.26 59.84 0.61 1.41 16 19 C 0.55 8.32 7.46 -10.98 -0.08 8.23 16 20 O -0.54 -10.32 15.84 5.56 0.09 -10.24 16 21 C -0.19 -2.10 5.28 -91.77 -0.48 -2.58 16 22 C -0.15 -1.30 10.24 -26.69 -0.27 -1.57 16 23 C -0.15 -1.51 10.05 -26.69 -0.27 -1.78 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 26 H 0.05 0.96 5.64 -51.93 -0.29 0.67 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 1.26 3.21 -51.93 -0.17 1.10 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.39 6.83 8.54 -40.82 -0.35 6.48 16 31 H 0.10 1.05 8.07 -51.93 -0.42 0.63 16 32 H 0.11 1.57 7.43 -51.93 -0.39 1.18 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.07 0.61 6.00 -51.93 -0.31 0.30 16 36 H 0.13 1.14 6.44 -51.93 -0.33 0.81 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.11 1.31 7.67 -51.93 -0.40 0.91 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -35.06 322.18 -5.99 -41.05 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.97 Total: 5.66 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -0.96 Total: 1.28 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.07 Total: -48.64 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.16 Total: -22.18 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.15 Total: 17.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.06 -5.99 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.984 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds