Wall clock time and date at job start Mon Mar 30 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 H 1.09002 * 109.46582 * 55.00210 * 3 2 1 5 5 C 1.50702 * 109.46832 * 175.00254 * 3 2 1 6 6 H 1.07995 * 119.99706 * 120.00174 * 5 3 2 7 7 C 1.37880 * 119.99970 * 299.99830 * 5 3 2 8 8 N 1.31513 * 119.99748 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99965 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47202 * 89.99851 * 9 7 5 11 11 H 1.48499 * 109.46907 * 209.99827 * 9 7 5 12 12 H 1.48501 * 109.47424 * 329.99752 * 9 7 5 13 13 N 1.46501 * 109.46819 * 295.00249 * 3 2 1 14 14 C 1.34774 * 119.99788 * 85.00629 * 13 3 2 15 15 O 1.21276 * 120.00433 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99823 * 179.97438 * 14 13 3 17 17 N 1.46493 * 109.47427 * 179.97438 * 16 14 13 18 18 C 1.46494 * 120.00444 * 269.72511 * 17 16 14 19 19 C 1.34784 * 119.99864 * 89.99800 * 17 16 14 20 20 O 1.21283 * 119.99649 * 359.72839 * 19 17 16 21 21 C 1.50694 * 119.99988 * 179.72721 * 19 17 16 22 22 C 1.52999 * 117.49935 * 248.74753 * 21 19 17 23 23 C 1.53002 * 117.49967 * 180.08613 * 21 19 17 24 24 H 1.09001 * 109.47510 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47134 * 299.99763 * 1 2 3 26 26 H 1.09000 * 109.47293 * 59.99889 * 1 2 3 27 27 H 1.09005 * 109.46621 * 240.00208 * 2 1 3 28 28 H 1.08998 * 109.46840 * 120.00731 * 2 1 3 29 29 H 0.97001 * 119.99391 * 180.02562 * 8 7 5 30 30 H 0.96993 * 119.99682 * 264.99596 * 13 3 2 31 31 H 1.09002 * 109.47046 * 59.99125 * 16 14 13 32 32 H 1.08996 * 109.46984 * 299.99723 * 16 14 13 33 33 H 1.08995 * 109.47693 * 270.27497 * 18 17 16 34 34 H 1.09003 * 109.47006 * 30.27410 * 18 17 16 35 35 H 1.09004 * 109.47665 * 150.27102 * 18 17 16 36 36 H 1.08998 * 115.55176 * 34.42045 * 21 19 17 37 37 H 1.08999 * 117.49667 * 359.97438 * 22 21 19 38 38 H 1.08999 * 117.50191 * 145.02310 * 22 21 19 39 39 H 1.09000 * 117.50371 * 214.98225 * 23 21 19 40 40 H 1.09007 * 117.49486 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8802 1.3361 9 14 3.0964 0.1087 2.5700 10 1 2.8755 -1.3273 2.2633 11 1 3.7938 0.2346 3.8751 12 1 1.7877 0.8073 2.6387 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3395 2.6321 -0.4343 16 6 0.0366 3.3387 -2.6543 17 7 -1.3223 3.8708 -2.5267 18 6 -2.4716 3.0417 -2.8977 19 6 -1.5149 5.1253 -2.0730 20 8 -0.5634 5.8118 -1.7659 21 6 -2.9124 5.6749 -1.9475 22 6 -3.3193 6.7962 -2.9057 23 6 -3.0647 7.1061 -1.4284 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.8770 0.4817 2.1128 30 1 2.2719 2.1231 -1.9977 31 1 0.0679 2.6146 -3.4685 32 1 0.7280 4.1541 -2.8666 33 1 -2.7030 3.1922 -3.9521 34 1 -2.2336 1.9922 -2.7242 35 1 -3.3335 3.3235 -2.2927 36 1 -3.6779 4.9527 -1.6640 37 1 -2.5760 7.1366 -3.6266 38 1 -4.3526 6.8118 -3.2523 39 1 -3.9306 7.3255 -0.8037 40 1 -2.1540 7.6500 -1.1773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:46 Heat of formation + Delta-G solvation = -62.938418 kcal Electronic energy + Delta-G solvation = -21144.516267 eV Core-core repulsion = 17959.657462 eV Total energy + Delta-G solvation = -3184.858805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47347 -40.37705 -37.49960 -36.92444 -36.29330 -34.42281 -33.34634 -30.36091 -29.07632 -27.50975 -25.08116 -24.31555 -23.30691 -22.47195 -21.28541 -20.02271 -19.23329 -18.55696 -17.81168 -17.68465 -17.08939 -16.48739 -16.20687 -15.90656 -15.43009 -15.09974 -14.99938 -14.46744 -14.23323 -13.87403 -13.82357 -13.67870 -13.58654 -13.20466 -13.00252 -12.79027 -12.74770 -12.42981 -12.40271 -11.88214 -11.52270 -11.42251 -11.39537 -11.26630 -10.98610 -10.90598 -10.86306 -9.77368 -9.68024 -8.40807 -6.46251 1.22963 1.31979 1.39493 1.41883 1.76522 1.89077 2.23278 2.59190 2.92782 2.94991 3.53231 3.81694 3.93454 3.98643 4.11469 4.21512 4.23487 4.31367 4.34490 4.40599 4.47080 4.73277 4.75463 4.81941 4.86666 4.96536 4.99891 5.07514 5.11607 5.21366 5.23063 5.36349 5.40226 5.51296 5.65614 6.12738 6.31268 6.55854 6.86716 7.12092 7.17548 7.46590 8.74626 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.004579 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.482473 B = 6113.984910 C = 6315.924636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 C 0.251 3.749 4 H 0.012 0.988 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.938 3.062 10 H -0.254 1.254 11 H -0.293 1.293 12 H -0.266 1.266 13 N -0.701 5.701 14 C 0.485 3.515 15 O -0.577 6.577 16 C 0.100 3.900 17 N -0.595 5.595 18 C 0.078 3.922 19 C 0.533 3.467 20 O -0.592 6.592 21 C -0.202 4.202 22 C -0.124 4.124 23 C -0.163 4.163 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.270 0.730 30 H 0.407 0.593 31 H 0.151 0.849 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.777 4.056 -12.765 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.173 4.173 3 C 0.145 3.855 4 H 0.030 0.970 5 C -0.574 4.574 6 H 0.073 0.927 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.766 3.234 10 H -0.180 1.180 11 H -0.221 1.221 12 H -0.191 1.191 13 N -0.351 5.351 14 C 0.271 3.729 15 O -0.457 6.457 16 C -0.027 4.027 17 N -0.326 5.326 18 C -0.063 4.063 19 C 0.324 3.676 20 O -0.473 6.473 21 C -0.222 4.222 22 C -0.161 4.161 23 C -0.200 4.200 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.242 0.758 31 H 0.168 0.832 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.109 0.891 38 H 0.157 0.843 39 H 0.144 0.856 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.682 4.307 -11.859 24.227 hybrid contribution 0.880 -0.421 0.887 1.318 sum -19.803 3.886 -10.972 22.970 Atomic orbital electron populations 1.21730 0.94989 1.00546 1.01461 1.22172 0.96022 0.98033 1.01110 1.18740 0.93048 0.89843 0.83822 0.97021 1.21327 0.90489 1.38519 1.07044 0.92668 1.25564 0.95764 0.95935 0.99814 1.69981 1.10265 1.46142 1.30880 0.86006 0.79010 0.80083 0.78316 1.17975 1.22074 1.19113 1.45990 1.15816 1.56278 1.17003 1.21724 0.81752 0.78307 0.91167 1.90636 1.52546 1.60502 1.41992 1.21407 0.85626 1.00613 0.95055 1.47470 1.07132 1.13562 1.64408 1.22092 0.87216 0.94991 1.02037 1.20445 0.91084 0.81221 0.74863 1.90676 1.45182 1.60282 1.51193 1.22274 0.94301 0.94575 1.11097 1.23049 1.04191 0.96656 0.92215 1.23033 1.03830 0.94642 0.98523 0.92048 0.95132 0.92305 0.90867 0.94061 0.92054 0.75795 0.83185 0.87776 0.89190 0.90944 0.89724 0.83391 0.89142 0.84255 0.85588 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 8.51 71.98 0.61 -4.27 16 2 C -0.14 -5.79 5.11 30.59 0.16 -5.64 16 3 C 0.25 12.13 1.83 44.25 0.08 12.21 16 4 H 0.01 0.66 6.64 -2.39 -0.02 0.65 16 5 C -0.54 -30.04 9.31 25.60 0.24 -29.80 16 6 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16 7 C 0.03 1.67 5.45 84.66 0.46 2.13 16 8 N -0.93 -57.21 13.96 21.45 0.30 -56.91 16 9 Si 0.94 46.01 24.41 68.60 1.67 47.69 16 10 H -0.25 -11.52 6.83 99.48 0.68 -10.84 16 11 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.27 -13.18 6.53 99.48 0.65 -12.53 16 13 N -0.70 -27.67 5.02 -446.09 -2.24 -29.91 16 14 C 0.48 17.91 6.47 87.66 0.57 18.47 16 15 O -0.58 -25.46 13.57 -3.02 -0.04 -25.50 16 16 C 0.10 2.63 5.89 85.64 0.50 3.13 16 17 N -0.60 -14.86 2.36 -851.16 -2.01 -16.87 16 18 C 0.08 1.19 10.26 127.77 1.31 2.50 16 19 C 0.53 15.83 7.46 87.65 0.65 16.48 16 20 O -0.59 -23.56 15.84 -3.04 -0.05 -23.61 16 21 C -0.20 -4.04 5.28 -11.54 -0.06 -4.10 16 22 C -0.12 -1.75 10.24 30.62 0.31 -1.44 16 23 C -0.16 -3.12 10.05 30.62 0.31 -2.82 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.03 1.26 7.85 -2.38 -0.02 1.24 16 26 H 0.06 2.09 5.64 -2.39 -0.01 2.08 16 27 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 28 H 0.04 1.87 3.21 -2.39 -0.01 1.86 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.41 13.93 8.54 -92.71 -0.79 13.14 16 31 H 0.15 2.51 8.07 -2.39 -0.02 2.49 16 32 H 0.10 2.93 7.43 -2.39 -0.02 2.91 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.13 8.07 -2.39 -0.02 1.11 16 35 H 0.08 1.10 6.00 -2.38 -0.01 1.09 16 36 H 0.15 2.22 6.44 -2.39 -0.02 2.20 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 1.97 7.67 -2.38 -0.02 1.96 16 Total: -1.00 -79.63 322.18 2.95 -76.68 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.17 Total: 21.58 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.15 Total: 6.86 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -3.95 Total: -103.70 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.09 Total: -49.11 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.69 kcal Total: -79.63 2.95 -76.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.740 kcal (2) G-P(sol) polarization free energy of solvation -79.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds