Wall clock time and date at job start Mon Mar 30 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46516 * 2 1 4 4 H 1.08994 * 109.47512 * 304.90092 * 3 2 1 5 5 C 1.50708 * 109.46675 * 184.90049 * 3 2 1 6 6 H 1.08002 * 119.99789 * 245.45406 * 5 3 2 7 7 C 1.37877 * 119.99930 * 65.45756 * 5 3 2 8 8 N 1.31509 * 119.99994 * 9.46619 * 7 5 3 9 9 Si 1.86797 * 119.99708 * 189.46681 * 7 5 3 10 10 H 1.48498 * 109.47328 * 84.99554 * 9 7 5 11 11 H 1.48503 * 109.47158 * 204.99301 * 9 7 5 12 12 H 1.48497 * 109.47344 * 324.99155 * 9 7 5 13 13 N 1.46499 * 109.47244 * 64.90559 * 3 2 1 14 14 C 1.34777 * 120.00066 * 274.99694 * 13 3 2 15 15 O 1.21282 * 119.99796 * 359.97438 * 14 13 3 16 16 C 1.50704 * 120.00241 * 179.97438 * 14 13 3 17 17 N 1.46493 * 109.46889 * 179.97438 * 16 14 13 18 18 C 1.46496 * 120.00303 * 269.99809 * 17 16 14 19 19 C 1.34774 * 119.99965 * 90.00474 * 17 16 14 20 20 O 1.21281 * 120.00076 * 359.97438 * 19 17 16 21 21 C 1.50705 * 120.00096 * 179.97438 * 19 17 16 22 22 C 1.52994 * 117.49757 * 248.61801 * 21 19 17 23 23 C 1.52999 * 60.00406 * 252.51193 * 22 21 19 24 24 H 1.08996 * 109.47370 * 299.99602 * 1 2 3 25 25 H 1.09000 * 109.47233 * 60.00062 * 1 2 3 26 26 H 1.09008 * 109.46759 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47141 * 240.00900 * 2 1 3 28 28 H 1.09000 * 109.47233 * 119.99938 * 2 1 3 29 29 H 0.96995 * 120.00135 * 180.02562 * 8 7 5 30 30 H 0.97003 * 120.00027 * 94.99516 * 13 3 2 31 31 H 1.09001 * 109.46930 * 300.00016 * 16 14 13 32 32 H 1.09002 * 109.46706 * 60.00108 * 16 14 13 33 33 H 1.09008 * 109.47157 * 90.00095 * 18 17 16 34 34 H 1.08999 * 109.47657 * 209.99872 * 18 17 16 35 35 H 1.09005 * 109.47268 * 330.00533 * 18 17 16 36 36 H 1.08998 * 115.55043 * 34.33005 * 21 19 17 37 37 H 1.09004 * 117.50031 * 359.97438 * 22 21 19 38 38 H 1.09004 * 117.49872 * 145.02514 * 22 21 19 39 39 H 1.09000 * 117.50001 * 252.51765 * 23 22 21 40 40 H 1.08997 * 117.52182 * 107.47975 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5420 1.4443 -0.1214 6 1 4.1492 1.8092 0.6939 7 6 4.1411 0.9803 -1.2732 8 7 3.4096 0.7117 -2.3326 9 14 5.9918 0.7331 -1.3290 10 1 6.3290 -0.6063 -0.7836 11 1 6.4618 0.8279 -2.7345 12 1 6.6560 1.7812 -0.5133 13 7 1.6503 2.0982 1.2508 14 6 0.4328 2.6651 1.3638 15 8 -0.3401 2.6329 0.4297 16 6 0.0318 3.3391 2.6507 17 7 -1.3264 3.8722 2.5200 18 6 -1.5338 5.2361 2.0271 19 6 -2.3853 3.1079 2.8535 20 8 -2.2137 1.9787 3.2612 21 6 -3.7826 3.6565 2.7196 22 6 -4.5635 3.9222 4.0081 23 6 -4.9422 2.7397 3.1142 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8310 0.3849 -3.1428 30 1 2.2686 2.1243 1.9978 31 1 0.0615 2.6148 3.4647 32 1 0.7228 4.1546 2.8643 33 1 -1.6321 5.2191 0.9416 34 1 -2.4420 5.6476 2.4676 35 1 -0.6817 5.8564 2.3051 36 1 -3.9418 4.3385 1.8844 37 1 -4.0669 3.6998 4.9526 38 1 -5.2369 4.7793 4.0209 39 1 -5.8646 2.8189 2.5387 40 1 -4.6946 1.7397 3.4701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:50 Heat of formation + Delta-G solvation = -48.039338 kcal Electronic energy + Delta-G solvation = -21101.061281 eV Core-core repulsion = 17916.848549 eV Total energy + Delta-G solvation = -3184.212733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19588 -38.71295 -36.33052 -35.42706 -34.69557 -32.34014 -31.10528 -28.88444 -26.84809 -26.44908 -23.78921 -22.78984 -22.55779 -20.46203 -19.33121 -18.90028 -17.53299 -17.22009 -16.27170 -15.79145 -15.30454 -15.06724 -14.57697 -14.40502 -14.17187 -13.74975 -12.97499 -12.80484 -12.66383 -12.64928 -12.49811 -12.15824 -11.68188 -11.58826 -11.36095 -11.21507 -10.99840 -10.74874 -10.74685 -10.59219 -10.31700 -10.16643 -9.74804 -9.63906 -9.33903 -9.07000 -8.46302 -8.36028 -7.79068 -6.12841 -4.18233 2.52554 2.96759 3.25904 3.32663 3.33659 3.43979 3.74937 4.20450 4.41723 4.46052 4.66194 4.75987 4.99943 5.08630 5.20062 5.32079 5.39632 5.40888 5.54729 5.60131 5.67030 5.77007 5.80175 6.00367 6.42508 6.42808 6.48846 6.68647 7.09055 7.22378 7.38489 7.40273 7.47975 7.64900 7.74907 7.87604 8.10558 8.26322 8.71402 8.82020 9.18333 9.47792 10.95358 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038706 B = 0.004210 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.219668 B = 6648.901137 C = 6948.672834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.270 3.730 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.485 3.515 15 O -0.540 6.540 16 C 0.093 3.907 17 N -0.593 5.593 18 C 0.082 3.918 19 C 0.549 3.451 20 O -0.538 6.538 21 C -0.189 4.189 22 C -0.155 4.155 23 C -0.148 4.148 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 9.103 11.485 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.269 3.731 15 O -0.418 6.418 16 C -0.034 4.034 17 N -0.325 5.325 18 C -0.061 4.061 19 C 0.337 3.663 20 O -0.414 6.414 21 C -0.210 4.210 22 C -0.192 4.192 23 C -0.186 4.186 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.528 8.416 10.798 17.897 hybrid contribution 1.464 -0.082 0.029 1.467 sum -10.064 8.334 10.826 16.969 Atomic orbital electron populations 1.21825 0.97909 0.98151 1.01555 1.21841 0.93035 0.99882 1.01028 1.18769 0.94209 0.88906 0.81294 0.92757 1.21188 0.90617 1.44009 1.01740 0.92104 1.24889 0.98426 0.95173 0.95001 1.69986 1.35732 1.43760 1.02151 0.86538 0.85057 0.78733 0.77217 1.20425 1.21206 1.19926 1.46453 1.14611 1.56124 1.18516 1.20788 0.82917 0.79898 0.89529 1.90661 1.51322 1.59610 1.40215 1.21425 0.83646 1.00311 0.98025 1.47206 1.05214 1.14829 1.65293 1.21827 1.02286 0.81747 1.00284 1.19578 0.85376 0.84809 0.76501 1.90689 1.85880 1.18415 1.46448 1.22183 0.90959 1.06219 1.01631 1.22924 1.02009 1.00704 0.93585 1.22948 0.96954 0.96506 1.02161 0.93695 0.93268 0.95919 0.90388 0.94754 0.92583 0.78064 0.87606 0.88082 0.91949 0.90891 0.91072 0.85776 0.88371 0.87923 0.87983 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.51 37.16 0.32 -2.96 16 2 C -0.12 -2.98 5.50 -26.73 -0.15 -3.12 16 3 C 0.27 6.89 2.11 -69.08 -0.15 6.75 16 4 H 0.05 1.62 7.52 -51.93 -0.39 1.23 16 5 C -0.54 -14.26 8.66 -34.44 -0.30 -14.56 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -25.15 12.16 55.43 0.67 -24.47 16 9 Si 0.90 20.70 29.55 -169.99 -5.02 15.67 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.78 5.02 -54.93 -0.28 -15.05 16 14 C 0.49 9.72 6.46 -10.98 -0.07 9.65 16 15 O -0.54 -12.82 13.57 5.56 0.08 -12.75 16 16 C 0.09 1.38 5.93 -5.20 -0.03 1.35 16 17 N -0.59 -8.45 2.36 -182.95 -0.43 -8.88 16 18 C 0.08 0.85 10.05 59.84 0.60 1.45 16 19 C 0.55 8.57 7.46 -10.98 -0.08 8.49 16 20 O -0.54 -10.43 15.84 5.56 0.09 -10.34 16 21 C -0.19 -2.17 4.80 -91.77 -0.44 -2.61 16 22 C -0.15 -1.36 10.23 -26.73 -0.27 -1.63 16 23 C -0.15 -1.55 10.04 -26.73 -0.27 -1.82 16 24 H 0.04 1.09 5.65 -51.93 -0.29 0.80 16 25 H 0.05 1.24 7.84 -51.93 -0.41 0.84 16 26 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.08 2.13 6.80 -51.93 -0.35 1.77 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.39 6.92 8.53 -40.82 -0.35 6.57 16 31 H 0.11 1.56 7.42 -51.93 -0.39 1.17 16 32 H 0.10 1.14 7.89 -51.93 -0.41 0.73 16 33 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.07 0.56 6.64 -51.93 -0.34 0.22 16 35 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 36 H 0.12 1.22 7.26 -51.93 -0.38 0.85 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.11 1.32 7.67 -51.93 -0.40 0.93 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -33.87 330.75 -7.03 -40.90 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.19 Total: 7.18 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.93 Total: 2.75 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.03 Total: -48.40 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.16 Total: -23.08 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.87 -7.03 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.136 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds