Wall clock time and date at job start Mon Mar 30 2020 01:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 N 1.46500 * 109.46894 * 180.02562 * 17 16 14 19 19 C 1.46762 * 124.35109 * 269.72312 * 18 17 16 20 20 C 1.54659 * 105.38493 * 162.85441 * 19 18 17 21 21 C 1.54635 * 101.68122 * 25.76847 * 20 19 18 22 22 C 1.34422 * 124.34847 * 90.02889 * 18 17 16 23 23 O 1.21280 * 124.94205 * 0.42577 * 22 18 17 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 28 28 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 29 29 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 30 30 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 31 31 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 32 32 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 33 33 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 34 34 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 35 35 H 1.08997 * 110.24989 * 281.99058 * 19 18 17 36 36 H 1.09004 * 110.24216 * 43.98298 * 19 18 17 37 37 H 1.08998 * 111.19808 * 267.60059 * 20 19 18 38 38 H 1.08993 * 110.82488 * 143.77699 * 20 19 18 39 39 H 1.09003 * 110.48911 * 216.30425 * 21 20 19 40 40 H 1.09006 * 110.59694 * 93.71807 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 7 -1.7250 4.5343 -3.8303 19 6 -1.4960 5.9527 -4.1298 20 6 -1.6289 6.0744 -5.6659 21 6 -2.5532 4.8793 -5.9958 22 6 -2.3259 3.9092 -4.8575 23 8 -2.6404 2.7379 -4.8697 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8117 0.4042 0.4384 30 1 2.2954 2.1150 -1.9977 31 1 0.7620 4.1421 -2.8933 32 1 0.1091 2.6000 -3.4965 33 1 -2.0464 3.0703 -2.3637 34 1 -1.3928 4.6121 -1.7606 35 1 -2.2458 6.5688 -3.6335 36 1 -0.4953 6.2480 -3.8144 37 1 -0.6610 5.9655 -6.1551 38 1 -2.0991 7.0185 -5.9405 39 1 -2.2676 4.4269 -6.9455 40 1 -3.5956 5.1970 -6.0238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:23 Heat of formation + Delta-G solvation = -109.372404 kcal Electronic energy + Delta-G solvation = -20768.589999 eV Core-core repulsion = 17581.717665 eV Total energy + Delta-G solvation = -3186.872334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44778 -40.69064 -37.54430 -37.10926 -34.74222 -34.48856 -33.18520 -30.89604 -29.05619 -28.43282 -25.50020 -24.21368 -22.72015 -22.12278 -21.21012 -20.33015 -19.79791 -18.24984 -17.54285 -17.25850 -17.05370 -16.64751 -16.25410 -15.59647 -15.11315 -14.91308 -14.69378 -14.55542 -14.46466 -14.25671 -14.09906 -13.78086 -13.46072 -13.28758 -13.09091 -12.67065 -12.53207 -12.36925 -12.28762 -12.11856 -11.81551 -11.78164 -11.60786 -11.24259 -10.90009 -10.76467 -10.42131 -9.80808 -9.77019 -8.82593 -6.41865 1.46694 1.48063 1.52386 1.69500 1.75268 1.92192 2.42027 2.62512 2.91862 3.44739 3.66476 3.80383 3.98591 4.03345 4.10124 4.26718 4.28082 4.37072 4.44038 4.53416 4.66242 4.69346 4.75642 4.84588 4.89849 4.91714 5.06100 5.12745 5.18596 5.25833 5.27306 5.51369 5.53602 5.66894 5.69859 6.01654 6.15655 6.53525 6.84112 7.12346 7.26202 7.43744 8.54092 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034418 B = 0.003977 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.321314 B = 7038.042951 C = 7259.875460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C 0.255 3.745 4 H 0.024 0.976 5 C -0.627 4.627 6 H 0.042 0.958 7 C 0.007 3.993 8 N -0.915 5.915 9 Si 1.063 2.937 10 H -0.280 1.280 11 H -0.271 1.271 12 H -0.258 1.258 13 N -0.704 5.704 14 C 0.505 3.495 15 O -0.581 6.581 16 C -0.141 4.141 17 C 0.147 3.853 18 N -0.619 5.619 19 C 0.090 3.910 20 C -0.118 4.118 21 C -0.148 4.148 22 C 0.496 3.504 23 O -0.591 6.591 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.262 0.738 30 H 0.402 0.598 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.618 13.851 -14.290 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C 0.150 3.850 4 H 0.042 0.958 5 C -0.665 4.665 6 H 0.060 0.940 7 C -0.196 4.196 8 N -0.549 5.549 9 Si 0.885 3.115 10 H -0.206 1.206 11 H -0.196 1.196 12 H -0.182 1.182 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.462 6.462 16 C -0.182 4.182 17 C 0.024 3.976 18 N -0.351 5.351 19 C -0.032 4.032 20 C -0.155 4.155 21 C -0.188 4.188 22 C 0.286 3.714 23 O -0.472 6.472 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.237 0.763 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.145 12.925 -11.952 22.583 hybrid contribution 0.761 -0.191 -1.790 1.954 sum -13.383 12.735 -13.742 23.024 Atomic orbital electron populations 1.21764 0.95706 1.00209 1.01337 1.22136 0.95093 0.98739 1.00809 1.18700 0.93518 0.89335 0.83470 0.95838 1.22151 0.91425 1.48875 1.04014 0.93987 1.26679 0.96709 0.91190 1.05028 1.70962 1.15071 1.38789 1.30046 0.83772 0.75733 0.78424 0.73550 1.20593 1.19646 1.18229 1.46141 1.15655 1.56274 1.17213 1.20951 0.81503 0.78365 0.90035 1.90652 1.51276 1.61143 1.43170 1.21913 0.99476 1.02150 0.94664 1.20879 0.93679 0.97877 0.85155 1.48534 1.59047 1.12218 1.15335 1.22516 1.03709 0.79291 0.97649 1.22680 1.00818 0.98927 0.93125 1.22382 1.03918 0.95741 0.96716 1.21951 0.75731 0.87794 0.85912 1.90709 1.54733 1.19039 1.82742 0.92832 0.93942 0.93522 0.93130 0.93068 0.92912 0.76347 0.86224 0.89061 0.92295 0.88612 0.89343 0.88890 0.89114 0.86134 0.87407 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.53 71.98 0.61 -4.83 16 2 C -0.13 -5.83 5.37 30.60 0.16 -5.66 16 3 C 0.25 12.13 1.84 44.25 0.08 12.21 16 4 H 0.02 1.22 6.12 -2.39 -0.01 1.21 16 5 C -0.63 -34.05 8.92 25.60 0.23 -33.82 16 6 H 0.04 2.40 7.96 -2.91 -0.02 2.38 16 7 C 0.01 0.39 5.15 84.66 0.44 0.83 16 8 N -0.92 -54.80 13.70 21.45 0.29 -54.50 16 9 Si 1.06 50.33 26.56 68.60 1.82 52.15 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.26 -11.47 6.34 99.48 0.63 -10.84 16 13 N -0.70 -27.80 5.03 -446.10 -2.24 -30.05 16 14 C 0.50 18.24 6.43 87.66 0.56 18.80 16 15 O -0.58 -24.63 13.13 -3.04 -0.04 -24.67 16 16 C -0.14 -3.67 6.02 29.85 0.18 -3.49 16 17 C 0.15 3.74 5.22 86.38 0.45 4.20 16 18 N -0.62 -12.41 2.93 -817.63 -2.40 -14.80 16 19 C 0.09 0.91 7.35 86.89 0.64 1.55 16 20 C -0.12 -0.68 7.19 31.72 0.23 -0.46 16 21 C -0.15 -1.74 6.86 30.59 0.21 -1.53 16 22 C 0.50 11.74 8.02 87.90 0.70 12.44 16 23 O -0.59 -20.59 17.59 -3.03 -0.05 -20.64 16 24 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.04 1.80 7.89 -2.39 -0.02 1.78 16 26 H 0.05 1.92 5.63 -2.39 -0.01 1.90 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 2.41 5.77 -2.39 -0.01 2.40 16 29 H 0.26 15.64 8.73 -92.71 -0.81 14.83 16 30 H 0.40 14.20 8.53 -92.71 -0.79 13.41 16 31 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 1.88 7.88 -2.39 -0.02 1.86 16 34 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 35 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -74.21 324.41 2.01 -72.20 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.13 Total: 20.08 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 4.50 Total: 0.24 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -4.35 Total: -99.35 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.09 Total: -45.32 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.82 Total: 52.15 kcal Total: -74.21 2.01 -72.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.171 kcal (2) G-P(sol) polarization free energy of solvation -74.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds