Wall clock time and date at job start Mon Mar 30 2020 01:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46769 * 305.00011 * 3 2 1 5 5 C 1.50700 * 109.46781 * 185.00265 * 3 2 1 6 6 H 1.08006 * 119.99723 * 240.00113 * 5 3 2 7 7 C 1.37878 * 120.00527 * 59.99960 * 5 3 2 8 8 N 1.31515 * 119.99461 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46872 * 90.00594 * 9 7 5 11 11 H 1.48503 * 109.46941 * 209.99906 * 9 7 5 12 12 H 1.48500 * 109.47111 * 330.00161 * 9 7 5 13 13 N 1.46494 * 109.47118 * 65.00507 * 3 2 1 14 14 C 1.34784 * 119.99635 * 274.99773 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.47267 * 179.97438 * 17 16 14 19 19 C 1.46767 * 124.34982 * 269.72367 * 18 17 16 20 20 C 1.54663 * 105.38133 * 162.85389 * 19 18 17 21 21 C 1.54632 * 101.68240 * 25.76571 * 20 19 18 22 22 C 1.34424 * 124.35058 * 90.02342 * 18 17 16 23 23 O 1.21284 * 124.93999 * 0.43272 * 22 18 17 24 24 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46957 * 299.99648 * 1 2 3 26 26 H 1.08997 * 109.47207 * 59.99863 * 1 2 3 27 27 H 1.09002 * 109.46957 * 240.00352 * 2 1 3 28 28 H 1.08997 * 109.47207 * 120.00137 * 2 1 3 29 29 H 0.96997 * 119.99851 * 179.97438 * 8 7 5 30 30 H 0.96995 * 120.00292 * 95.27206 * 13 3 2 31 31 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 32 32 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 33 33 H 1.09004 * 109.47330 * 299.99977 * 17 16 14 34 34 H 1.09005 * 109.47124 * 59.99773 * 17 16 14 35 35 H 1.08998 * 110.24965 * 281.98260 * 19 18 17 36 36 H 1.08999 * 110.24331 * 43.98247 * 19 18 17 37 37 H 1.09002 * 111.18953 * 267.59716 * 20 19 18 38 38 H 1.08992 * 110.81848 * 143.78003 * 20 19 18 39 39 H 1.08996 * 110.48524 * 216.30497 * 21 20 19 40 40 H 1.09003 * 110.59276 * 93.72287 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5548 -0.3502 -0.7604 11 1 6.3829 0.9224 -2.8174 12 1 6.5569 2.0739 -0.6902 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3393 2.6327 0.4341 16 6 0.0366 3.3386 2.6545 17 6 -1.3826 3.8942 2.5213 18 7 -1.7702 4.5491 3.7731 19 6 -2.4433 3.8722 4.8879 20 6 -2.2508 4.8020 6.1088 21 6 -2.0767 6.1798 5.4287 22 6 -1.5602 5.8485 4.0460 23 8 -1.0336 6.6401 3.2930 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8292 -0.0611 -2.9498 30 1 2.2734 2.1266 1.9964 31 1 0.0681 2.6145 3.4687 32 1 0.7280 4.1541 2.8668 33 1 -1.4145 4.6182 1.7070 34 1 -2.0738 3.0783 2.3093 35 1 -3.5037 3.7477 4.6687 36 1 -1.9801 2.9037 5.0761 37 1 -1.3591 4.5306 6.6740 38 1 -3.1340 4.7909 6.7473 39 1 -1.3509 6.7846 5.9723 40 1 -3.0329 6.6992 5.3644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:26 Heat of formation + Delta-G solvation = -107.772253 kcal Electronic energy + Delta-G solvation = -20686.568813 eV Core-core repulsion = 17499.765866 eV Total energy + Delta-G solvation = -3186.802946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41560 -40.59269 -37.51583 -36.99537 -34.70674 -34.29398 -32.84062 -30.84247 -28.88042 -28.41434 -25.68351 -24.59031 -22.69300 -21.97945 -21.08443 -20.30869 -18.97137 -17.93936 -17.55263 -17.12023 -16.94555 -16.74206 -16.20877 -15.93792 -15.04598 -14.82911 -14.67349 -14.61964 -14.20036 -14.08619 -13.66336 -13.39956 -13.33673 -13.15610 -13.05980 -12.88728 -12.67189 -12.31535 -12.18218 -12.12061 -12.02631 -11.79260 -11.58030 -11.05833 -10.86905 -10.70416 -10.52253 -9.74406 -9.62589 -8.17290 -6.34737 1.42946 1.44196 1.53879 1.54902 1.83895 1.95018 2.37554 2.77154 3.12021 3.46581 3.68602 3.85232 4.01445 4.10876 4.13000 4.29346 4.48833 4.50370 4.58758 4.69344 4.71659 4.77202 4.79148 4.92347 4.93385 5.07181 5.14911 5.27009 5.28258 5.44868 5.55320 5.56576 5.62728 5.80246 5.92545 6.17426 6.18172 6.73672 6.98044 7.14408 7.32613 7.58237 8.87923 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030819 B = 0.003836 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.320899 B = 7297.229971 C = 7728.250785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.276 3.724 4 H -0.005 1.005 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.706 5.706 14 C 0.501 3.499 15 O -0.588 6.588 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.618 5.618 19 C 0.090 3.910 20 C -0.117 4.117 21 C -0.147 4.147 22 C 0.495 3.505 23 O -0.594 6.594 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.265 0.735 30 H 0.403 0.597 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.888 4.150 20.531 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.013 0.987 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.355 5.355 14 C 0.288 3.712 15 O -0.470 6.470 16 C -0.180 4.180 17 C 0.024 3.976 18 N -0.351 5.351 19 C -0.032 4.032 20 C -0.154 4.154 21 C -0.187 4.187 22 C 0.285 3.715 23 O -0.475 6.475 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.143 0.857 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.133 4.377 19.249 22.663 hybrid contribution 1.336 0.008 -0.734 1.524 sum -9.797 4.385 18.515 21.401 Atomic orbital electron populations 1.21673 0.96750 0.99210 1.00359 1.21765 0.93970 0.98864 1.01300 1.18375 0.93537 0.89389 0.81449 0.98693 1.21601 0.91605 1.38939 1.06737 0.91253 1.25768 1.03314 0.94391 0.94999 1.70048 1.37033 1.38328 1.09852 0.85381 0.79156 0.78856 0.77155 1.19431 1.21253 1.19161 1.46287 1.15552 1.56006 1.17636 1.20991 0.81871 0.78343 0.90045 1.90663 1.52534 1.61265 1.42536 1.21899 0.98711 1.01679 0.95674 1.20856 0.94518 0.97379 0.84836 1.48540 1.58565 1.10310 1.17664 1.22529 0.98321 0.97591 0.84712 1.22683 1.05652 0.90991 0.96123 1.22377 1.04465 1.00794 0.91072 1.21996 0.77228 0.81807 0.90495 1.90714 1.46495 1.53756 1.56489 0.93459 0.93326 0.95792 0.91177 0.93886 0.92596 0.76222 0.85690 0.89256 0.92889 0.88635 0.89445 0.88641 0.88940 0.86102 0.87372 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.52 71.98 0.61 -4.80 16 2 C -0.12 -5.88 5.45 30.60 0.17 -5.72 16 3 C 0.28 14.29 2.24 44.25 0.10 14.39 16 4 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 5 C -0.55 -29.55 8.73 25.60 0.22 -29.32 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -52.82 11.29 21.45 0.24 -52.58 16 9 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 N -0.71 -29.09 5.02 -446.10 -2.24 -31.33 16 14 C 0.50 19.45 6.40 87.66 0.56 20.01 16 15 O -0.59 -27.61 13.12 -3.03 -0.04 -27.65 16 16 C -0.14 -3.80 6.02 29.85 0.18 -3.62 16 17 C 0.15 4.02 5.22 86.38 0.45 4.47 16 18 N -0.62 -13.08 2.93 -817.62 -2.40 -15.47 16 19 C 0.09 0.94 7.36 86.90 0.64 1.58 16 20 C -0.12 -0.70 7.19 31.72 0.23 -0.47 16 21 C -0.15 -1.83 6.86 30.59 0.21 -1.62 16 22 C 0.49 12.32 8.02 87.89 0.70 13.02 16 23 O -0.59 -21.73 17.59 -3.04 -0.05 -21.78 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 2.01 5.65 -2.39 -0.01 2.00 16 26 H 0.02 1.14 7.85 -2.39 -0.02 1.13 16 27 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 28 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.40 14.07 8.54 -92.71 -0.79 13.28 16 31 H 0.13 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 33 H 0.05 1.85 7.88 -2.38 -0.02 1.83 16 34 H 0.10 2.42 8.10 -2.38 -0.02 2.40 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.12 327.11 2.30 -73.82 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.24 Total: 21.17 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 4.52 Total: 9.20 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -4.40 Total: -99.39 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.09 Total: -49.43 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -76.12 2.30 -73.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.950 kcal (2) G-P(sol) polarization free energy of solvation -76.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds