Wall clock time and date at job start Mon Mar 30 2020 01:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21280 * 119.99940 * 2 1 4 4 N 1.34775 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.47060 * 136.05731 * 359.62794 * 4 2 1 6 6 C 1.53242 * 88.08607 * 207.20707 * 5 4 2 7 7 C 1.50699 * 114.32485 * 220.47466 * 6 5 4 8 8 O 1.21276 * 120.00464 * 73.27012 * 7 6 5 9 9 N 1.34777 * 119.99906 * 253.26918 * 7 6 5 10 10 C 1.46505 * 119.99933 * 5.34624 * 9 7 6 11 11 C 1.50697 * 109.46947 * 90.00257 * 10 9 7 12 12 H 1.08006 * 120.00208 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00152 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99724 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00243 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47195 * 89.99418 * 15 13 11 17 17 H 1.48492 * 109.47158 * 209.99884 * 15 13 11 18 18 H 1.48503 * 109.46939 * 329.99824 * 15 13 11 19 19 C 1.46494 * 120.00300 * 185.35308 * 9 7 6 20 20 C 1.53007 * 109.47010 * 299.48732 * 19 9 7 21 21 C 1.52999 * 109.47313 * 59.48544 * 19 9 7 22 22 C 1.47068 * 136.05522 * 180.02562 * 4 2 1 23 23 H 1.08998 * 109.47097 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46761 * 60.00871 * 1 2 3 25 25 H 1.08993 * 109.47648 * 300.00794 * 1 2 3 26 26 H 1.09003 * 113.47174 * 321.94091 * 5 4 2 27 27 H 1.09005 * 113.46760 * 92.37879 * 5 4 2 28 28 H 1.08995 * 114.19655 * 87.73160 * 6 5 4 29 29 H 1.08998 * 109.47232 * 210.00349 * 10 9 7 30 30 H 1.09001 * 109.47184 * 330.00204 * 10 9 7 31 31 H 0.97006 * 119.99880 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.47398 * 179.48807 * 19 9 7 33 33 H 1.08998 * 109.46931 * 67.33672 * 20 19 9 34 34 H 1.08994 * 109.47296 * 187.33680 * 20 19 9 35 35 H 1.09000 * 109.46976 * 307.33702 * 20 19 9 36 36 H 1.08992 * 109.47222 * 53.15735 * 21 19 9 37 37 H 1.09000 * 109.47171 * 173.15695 * 21 19 9 38 38 H 1.08997 * 109.47079 * 293.15134 * 21 19 9 39 39 H 1.09007 * 113.46413 * 267.61602 * 22 4 2 40 40 H 1.08993 * 113.47390 * 38.05343 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.8265 -2.5944 0.0078 6 6 3.1648 -2.8704 0.7015 7 6 3.8766 -4.1039 0.2089 8 8 4.4119 -4.1014 -0.8793 9 7 3.9184 -5.2101 0.9778 10 6 3.1743 -5.2540 2.2391 11 6 1.7881 -5.7882 1.9862 12 1 1.4909 -6.0668 0.9859 13 6 0.8989 -5.9205 3.0315 14 7 1.2607 -5.5808 4.2494 15 14 -0.8192 -6.5834 2.7181 16 1 -0.8135 -8.0613 2.8624 17 1 -1.7640 -5.9938 3.7003 18 1 -1.2459 -6.2220 1.3424 19 6 4.7079 -6.3685 0.5525 20 6 4.1787 -6.8818 -0.7882 21 6 6.1737 -5.9579 0.3986 22 6 3.5942 -1.5739 0.0012 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 0.5139 0.8898 26 1 0.9614 -2.8238 0.6299 27 1 1.7566 -3.0294 -0.9893 28 1 3.1274 -2.7997 1.7886 29 1 3.6917 -5.9051 2.9437 30 1 3.1060 -4.2491 2.6558 31 1 0.6352 -5.6742 4.9850 32 1 4.6281 -7.1571 1.3006 33 1 4.3772 -6.1426 -1.5643 34 1 4.6773 -7.8173 -1.0415 35 1 3.1045 -7.0512 -0.7140 36 1 6.5156 -5.4806 1.3169 37 1 6.7799 -6.8421 0.2013 38 1 6.2700 -5.2588 -0.4320 39 1 4.0002 -1.7341 -0.9977 40 1 4.2289 -0.9373 0.6175 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615963113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:26 Heat of formation + Delta-G solvation = -37.220386 kcal Electronic energy + Delta-G solvation = -21492.247953 eV Core-core repulsion = 18308.504365 eV Total energy + Delta-G solvation = -3183.743588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60929 -38.99848 -37.34227 -35.36491 -33.25713 -31.74774 -30.78844 -28.39885 -27.05826 -26.66803 -25.72132 -23.82949 -22.83213 -20.93177 -18.73424 -18.26497 -16.84993 -16.66751 -16.41654 -15.67405 -15.39118 -15.18834 -14.55339 -14.20178 -14.09904 -13.18014 -12.99812 -12.90856 -12.54418 -12.45238 -12.39952 -12.24874 -12.17601 -11.86519 -11.72819 -11.50005 -11.43768 -11.03642 -10.97176 -10.75904 -10.46431 -10.39793 -10.12714 -9.78958 -9.76874 -8.97700 -8.61823 -8.49357 -7.79714 -6.26046 -4.33689 2.75449 2.97491 3.13467 3.15951 3.24519 3.26615 3.83438 4.25896 4.58479 4.83566 5.06640 5.12432 5.17444 5.28668 5.40935 5.49674 5.58649 5.64785 5.67039 5.72488 5.79951 5.81252 5.87155 6.02177 6.03178 6.16128 6.29749 6.34397 6.40790 6.67428 6.74638 6.79932 7.11623 7.49366 7.69001 7.87466 7.97386 8.25815 8.28275 8.71346 8.91493 9.34483 10.80503 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.008114 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.140511 B = 3450.125541 C = 5154.749434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.541 3.459 3 O -0.558 6.558 4 N -0.646 5.646 5 C 0.127 3.873 6 C -0.144 4.144 7 C 0.533 3.467 8 O -0.566 6.566 9 N -0.586 5.586 10 C 0.234 3.766 11 C -0.536 4.536 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.894 3.106 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.147 3.853 20 C -0.163 4.163 21 C -0.164 4.164 22 C 0.121 3.879 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 1.949 -5.692 6.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.332 3.668 3 O -0.437 6.437 4 N -0.381 5.381 5 C 0.004 3.996 6 C -0.166 4.166 7 C 0.320 3.680 8 O -0.447 6.447 9 N -0.316 5.316 10 C 0.115 3.885 11 C -0.575 4.575 12 H 0.080 0.920 13 C -0.138 4.138 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C 0.043 3.957 20 C -0.221 4.221 21 C -0.222 4.222 22 C -0.002 4.002 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.147 0.853 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.695 2.707 -6.027 6.820 hybrid contribution -1.164 -0.641 0.203 1.344 sum 0.531 2.065 -5.824 6.202 Atomic orbital electron populations 1.21793 0.91334 1.04536 1.04898 1.20333 0.90065 0.81255 0.75138 1.90695 1.70880 1.30459 1.51634 1.49705 1.09827 1.05860 1.72722 1.22773 0.97864 0.78069 1.00896 1.23030 0.97303 0.93329 1.02932 1.19777 0.79840 0.84142 0.84249 1.90552 1.48511 1.84233 1.21387 1.48344 1.46810 1.12784 1.23635 1.19533 0.90926 0.98482 0.79592 1.21472 0.97145 1.44080 0.94761 0.91991 1.24935 0.98780 0.95140 0.94905 1.69917 1.36124 1.47254 0.99515 0.86559 0.83814 0.79310 0.78182 1.20534 1.21092 1.19721 1.20859 0.89965 0.88077 0.96756 1.22169 1.01305 1.00534 0.98049 1.22183 0.95767 1.01749 1.02548 1.22896 0.83939 0.91858 1.01498 0.90336 0.88908 0.88755 0.88758 0.89287 0.85335 0.94665 0.94210 0.92474 0.89826 0.90837 0.93158 0.92397 0.93038 0.92609 0.91023 0.88454 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.36 36.00 0.37 -1.54 16 2 C 0.54 8.67 8.19 -10.99 -0.09 8.58 16 3 O -0.56 -10.96 17.88 5.56 0.10 -10.86 16 4 N -0.65 -10.15 3.69 -185.40 -0.68 -10.83 16 5 C 0.13 1.94 7.55 -8.64 -0.07 1.88 16 6 C -0.14 -2.39 3.78 -91.40 -0.35 -2.73 16 7 C 0.53 9.80 6.57 -10.99 -0.07 9.73 16 8 O -0.57 -10.99 12.44 5.56 0.07 -10.92 16 9 N -0.59 -11.16 2.41 -167.47 -0.40 -11.56 16 10 C 0.23 5.09 5.02 -5.19 -0.03 5.06 16 11 C -0.54 -12.76 9.39 -34.44 -0.32 -13.08 16 12 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 13 C 0.07 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -23.20 13.29 55.43 0.74 -22.47 16 15 Si 0.89 19.34 29.54 -169.99 -5.02 14.32 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C 0.15 2.52 3.28 -67.93 -0.22 2.30 16 20 C -0.16 -2.67 8.99 37.16 0.33 -2.33 16 21 C -0.16 -2.50 9.01 37.16 0.33 -2.16 16 22 C 0.12 1.89 8.08 -8.51 -0.07 1.83 16 23 H 0.08 0.82 7.32 -51.93 -0.38 0.44 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.09 1.42 7.96 -51.93 -0.41 1.01 16 27 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 28 H 0.13 2.22 6.07 -51.93 -0.32 1.91 16 29 H 0.04 0.82 7.92 -51.93 -0.41 0.41 16 30 H 0.04 0.89 5.76 -51.93 -0.30 0.59 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.08 1.44 7.79 -51.93 -0.40 1.03 16 33 H 0.07 1.29 6.26 -51.93 -0.33 0.96 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.18 6.50 -51.93 -0.34 0.84 16 39 H 0.10 1.54 7.38 -51.92 -0.38 1.16 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -28.49 330.41 -6.69 -35.18 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.19 Total: 3.12 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -0.27 Total: 9.05 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.35 Total: -44.86 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.17 Total: -21.78 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.49 -6.69 -35.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615963113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.044 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds